Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006373

Physical Location & Seq

Genomic Coordinates Forward (+)

21268607 .. 21269458

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTGCTTCTGCAAAGACTCTCACTGCTGAAAATCATACCTTAAACGAAGAGTGGACGGTCGTTTCATCTCGTCGTGGCATCAAAAGAAGAAACCCGCCCAGAACGCAAACCCTAGCACAGAAGCAGCAGCAGCAGCAGCACCATCCTTGGGCTCCAACCGATTCCGAAATCAACTTTGTCCGAGAATCAAAGCTGATGCAGAAGATGCAGATCTACATGAAGAAATTGGAGACGTCTCGCTTCTTTCTCACTTTACTGGATCAAATCCGAACTCCGGAATTGACCAATTGCTTCCTTAAGGTTCTGAGCTCTGAGTCGAAAATGAACATGGTGATATACGGAATTGGCAGCCTCGAGAGCTACGATTCGCCTCGGTTGCAGTTGAGCCTTGCGATCTTGCTGAAGAGAAATGTCAGCTGGATTGGAGATATAGAGGTGTTTGATCCCGTGCTTTCTGCCACCGAAACTCGAGTTCTGGAAGCTCTTGGCTGCTCTGTGCTGTCTGTAAACGAGCAAGGCCGGCGTCGGGCTCAAAAGCCGATGATGTTCTTCATGCCGCATTGCGAGGCAGAGTTGTACGATAATCTTCTGCAGGCGAATTGGGAAGTGCGGCTGTTGAATTGCATCGTATTGTTTGGGAATAGCTTTGAGACGTACGAGCAGCACCTGTCGGAGTTTAAGAACTCGTCCATTGTCGACTCGACGACGCATATCTTGGCTGCTCGAAAATTCACAGATGAGTTTGGAATTAAGACAGTTTCTGATGATTATTTTGGCGCTTTTCATGATTCAAGTTGGCATTTTTTCAGCCCTGCTCTTGAGACAGCACTGCAATTTACCAGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0023052 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRR1

Protein Analysis

284

Amino Acids

32.56

Weight (kDa)

6.46

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRR1	PF07985	103 - 269	2.7e-42	SRR1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59560 AT5G59560
fragaria_vesca	FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300
malus_domestica	MD02G1270100.v1.1 MD06G1045900.v1.1
prunus_persica	Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1
pyrus_communis	pycom02g23130 pycom06g03890
rosa_chinensis	RchiOBHm_Chr7g0215511
rosa_laevigata	RLG00000002653
rosa_multiflora	Rmu_sc0000898.1_g000109
rosa_roxburghii	Rroxscaffold_3G00244170
rosa_rugosa	Rorug07G0154400 Rorug07G0154500 Rorug07G0154600
rosa_samantha	Rh7AG290500 Rh7BG282700 Rh7CG310500 Rh7DG294300
rosa_wichuraiana	Rw7G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	699
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	3 cut(s)	98, 560, 613
AclWI	GGATC	2 cut(s)	270, 440
AcsI	RAATTY	1 cut(s)	731
AcuI	CTGAAG	1 cut(s)	425
AcyI	GRCGYC	2 cut(s)	236, 526
AfaI	GTAC	2 cut(s)	581, 659
AfiI	CCNNNNNNNGG	3 cut(s)	151, 277, 529
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	622, 795
AluBI	AGCT	6 cut(s)	196, 312, 363, 420, 485, 648
AluI	AGCT	6 cut(s)	196, 312, 363, 420, 485, 648
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	4 cut(s)	227, 243, 647, 818
AlwI	GGATC	2 cut(s)	270, 440
AlwNI	CAGNNNCTG	3 cut(s)	670, 764, 849
Ama87I	CYCGRG	2 cut(s)	356, 471
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	1 cut(s)	520
ApoI	RAATTY	1 cut(s)	731
AspLEI	GCGC	1 cut(s)	782
AsuHPI	GGTGA	1 cut(s)	346
AvaI	CYCGRG	2 cut(s)	356, 471
BanII	GRGCYC	3 cut(s)	157, 314, 535
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	9 cut(s)	139, 142, 145, 148, 151, 363, 479, 676, 709
BccI	CCATC	1 cut(s)	153
BcoDI	GTCTC	4 cut(s)	227, 243, 647, 818
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	593
BfoI	RGCGCY	1 cut(s)	783
BfrI	CTTAAG	1 cut(s)	299
BglII	AGATCT	1 cut(s)	213
BmeT110I	CYCGRG	2 cut(s)	356, 471
BmiI	GGNNCC	1 cut(s)	156
BmsI	GCATC	4 cut(s)	90, 189, 198, 636
BpuEI	CTTGAG	1 cut(s)	842
BsaBI	GATNNNNATC	1 cut(s)	212
BsaHI	GRCGYC	2 cut(s)	236, 526
BsaJI	CCNNGG	2 cut(s)	149, 374
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 277, 529
Bse118I	RCCGGY	1 cut(s)	522
Bse1I	ACTGG	2 cut(s)	264, 843
Bse3DI	GCAATG	1 cut(s)	562
Bse8I	GATNNNNATC	1 cut(s)	212
BseAI	TCCGGA	1 cut(s)	277
BseDI	CCNNGG	2 cut(s)	149, 374
BseGI	GGATG	1 cut(s)	145
BseJI	GATNNNNATC	1 cut(s)	212
BseLI	CCNNNNNNNGG	3 cut(s)	151, 277, 529
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	2 cut(s)	299, 306
BseNI	ACTGG	2 cut(s)	264, 843
BseXI	GCAGC	9 cut(s)	139, 142, 145, 148, 151, 363, 479, 676, 709
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	522
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	314
BsiHKCI	CYCGRG	2 cut(s)	356, 471
BsiSI	CCGG	2 cut(s)	278, 523
BsiWI	CGTACG	1 cut(s)	657
BslI	CCNNNNNNNGG	3 cut(s)	151, 277, 529
BsmAI	GTCTC	4 cut(s)	227, 243, 647, 818
BsmBI	CGTCTC	3 cut(s)	227, 243, 647
BsnI	GGCC	1 cut(s)	522
BsoBI	CYCGRG	2 cut(s)	356, 471
Bsp1286I	GDGCHC	3 cut(s)	157, 314, 535
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	213, 262, 396, 445
BspACI	CCGC	3 cut(s)	98, 560, 613
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	2 cut(s)	300, 307
BspEI	TCCGGA	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	597
BspPI	GGATC	2 cut(s)	270, 440
BspTI	CTTAAG	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	562
BsrFI	RCCGGY	1 cut(s)	522
BsrI	ACTGG	2 cut(s)	264, 843
BssAI	RCCGGY	1 cut(s)	522
BssECI	CCNNGG	2 cut(s)	149, 374
BssMI	GATC	4 cut(s)	213, 262, 396, 445
BssNI	GRCGYC	2 cut(s)	236, 526
BssT1I	CCWWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	61, 760
Bst6I	CTCTTC	2 cut(s)	45, 401
BstACI	GRCGYC	2 cut(s)	236, 526
BstAFI	CTTAAG	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstC8I	GCNNGC	2 cut(s)	524, 597
BstDEI	CTNAG	2 cut(s)	308, 315
BstF5I	GGATG	1 cut(s)	145
BstH2I	RGCGCY	1 cut(s)	783
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	4 cut(s)	216, 265, 399, 448
BstMAI	GTCTC	4 cut(s)	227, 243, 647, 818
BstMBI	GATC	4 cut(s)	213, 262, 396, 445
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 106, 133, 136, 139, 208, 360, 379, 523
BstSFI	CTRYAG	1 cut(s)	593
BstV1I	GCAGC	9 cut(s)	139, 142, 145, 148, 151, 363, 479, 676, 709
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	522
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	2 cut(s)	24, 830
BtsIMutI	CAGTG	2 cut(s)	24, 830
Cac8I	GCNNGC	2 cut(s)	524, 597
CaiI	CAGNNNCTG	3 cut(s)	670, 764, 849
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	1 cut(s)	782
Cfr10I	RCCGGY	1 cut(s)	522
CseI	GACGC	2 cut(s)	515, 718
Csp6I	GTAC	2 cut(s)	580, 658
CviAII	CATG	4 cut(s)	220, 331, 556, 788
CviQI	GTAC	2 cut(s)	580, 658
DdeI	CTNAG	2 cut(s)	308, 315
DpnI	GATC	4 cut(s)	215, 264, 398, 447
DpnII	GATC	4 cut(s)	213, 262, 396, 445
Eam1104I	CTCTTC	2 cut(s)	45, 401
EarI	CTCTTC	2 cut(s)	45, 401
Ecl136II	GAGCTC	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	3 cut(s)	157, 314, 535
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	425
Eco88I	CYCGRG	2 cut(s)	356, 471
EcoICRI	GAGCTC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	3 cut(s)	157, 314, 535
ErhI	CCWWGG	1 cut(s)	149
Esp3I	CGTCTC	3 cut(s)	227, 243, 647
FaeI	CATG	4 cut(s)	223, 334, 559, 791
FaiI	YATR	8 cut(s)	39, 221, 332, 340, 434, 557, 714, 789
FatI	CATG	4 cut(s)	219, 330, 555, 787
FauI	CCCGC	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	699
FokI	GGATG	1 cut(s)	132
FriOI	GRGCYC	3 cut(s)	157, 314, 535
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	781
HaeII	RGCGCY	1 cut(s)	783
HaeIII	GGCC	1 cut(s)	522
HapII	CCGG	2 cut(s)	278, 523
HgaI	GACGC	2 cut(s)	515, 718
HhaI	GCGC	1 cut(s)	782
Hin1I	GRCGYC	2 cut(s)	236, 526
Hin1II	CATG	4 cut(s)	223, 334, 559, 791
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	7 cut(s)	19, 164, 188, 317, 368, 701, 791
HpaII	CCGG	2 cut(s)	278, 523
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	3 cut(s)	57, 511, 700
Hpy188I	TCNGA	7 cut(s)	169, 185, 272, 309, 316, 676, 766
Hpy188III	TCNNGA	5 cut(s)	278, 358, 479, 788, 821
Hpy8I	GTNNAC	3 cut(s)	57, 511, 700
Hpy99I	CGWCG	4 cut(s)	78, 531, 709, 712
HpyCH4III	ACNGT	2 cut(s)	61, 760
HpyCH4IV	ACGT	2 cut(s)	236, 656
HpyCH4V	TGCA	7 cut(s)	14, 202, 211, 382, 595, 627, 835
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 106, 133, 136, 139, 208, 360, 379, 523
HpyF3I	CTNAG	2 cut(s)	308, 315
HpySE526I	ACGT	2 cut(s)	236, 656
Hsp92I	GRCGYC	2 cut(s)	236, 526
Hsp92II	CATG	4 cut(s)	223, 334, 559, 791
HspAI	GCGC	1 cut(s)	780
Kpn2I	TCCGGA	1 cut(s)	277
KroI	GCCGGC	1 cut(s)	522
KroNI	GCCGGC	1 cut(s)	524
Kzo9I	GATC	4 cut(s)	213, 262, 396, 445
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	9 cut(s)	115, 245, 291, 406, 464, 536, 581, 683, 828
Lsp1109I	GCAGC	9 cut(s)	139, 142, 145, 148, 151, 363, 479, 676, 709
LweI	GCATC	4 cut(s)	90, 189, 198, 636
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	2 cut(s)	236, 656
MalI	GATC	4 cut(s)	215, 264, 398, 447
MboI	GATC	4 cut(s)	213, 262, 396, 445
MboII	GAAGA	7 cut(s)	62, 102, 217, 235, 418, 544, 581
MfeI	CAATTG	1 cut(s)	289
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	3 cut(s)	157, 314, 535
MluCI	AATT	9 cut(s)	227, 281, 289, 345, 601, 622, 731, 750, 836
MlyI	GAGTC	3 cut(s)	13, 326, 695
MmeI	TCCRAC	2 cut(s)	182, 654
MnlI	CCTC	4 cut(s)	365, 384, 430, 562
MroI	TCCGGA	1 cut(s)	277
MroNI	GCCGGC	1 cut(s)	522
MseI	TTAA	4 cut(s)	44, 300, 681, 753
MspA1I	CMGCKG	1 cut(s)	420
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	2 cut(s)	278, 523
MunI	CAATTG	1 cut(s)	289
MwoI	GCNNNNNNNGC	9 cut(s)	11, 106, 133, 136, 139, 208, 360, 379, 523
NaeI	GCCGGC	1 cut(s)	524
NdeII	GATC	4 cut(s)	213, 262, 396, 445
NgoMIV	GCCGGC	1 cut(s)	522
NlaIII	CATG	4 cut(s)	223, 334, 559, 791
NlaIV	GGNNCC	1 cut(s)	156
PaeR7I	CTCGAG	2 cut(s)	356, 471
PagI	TCATGA	1 cut(s)	787
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PdiI	GCCGGC	1 cut(s)	524
PfeI	GAWTC	4 cut(s)	164, 188, 368, 791
Pfl23II	CGTACG	1 cut(s)	657
PleI	GAGTC	3 cut(s)	13, 325, 695
PpsI	GAGTC	3 cut(s)	13, 325, 695
Psp124BI	GAGCTC	1 cut(s)	314
PspLI	CGTACG	1 cut(s)	657
PspN4I	GGNNCC	1 cut(s)	156
PspXI	VCTCGAGB	1 cut(s)	471
PstI	CTGCAG	1 cut(s)	597
PstNI	CAGNNNCTG	3 cut(s)	670, 764, 849
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	420
RsaI	GTAC	2 cut(s)	581, 659
RsaNI	GTAC	2 cut(s)	580, 658
SacI	GAGCTC	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	698
SaqAI	TTAA	4 cut(s)	44, 300, 681, 753
Sau3AI	GATC	4 cut(s)	213, 262, 396, 445
SchI	GAGTC	3 cut(s)	13, 326, 695
SduI	GDGCHC	3 cut(s)	157, 314, 535
SfaNI	GCATC	4 cut(s)	90, 189, 198, 636
SfcI	CTRYAG	1 cut(s)	593
Sfr274I	CTCGAG	2 cut(s)	356, 471
SlaI	CTCGAG	2 cut(s)	356, 471
SmlI	CTYRAG	4 cut(s)	299, 356, 471, 821
SmoI	CTYRAG	4 cut(s)	299, 356, 471, 821
Sse9I	AATT	9 cut(s)	227, 281, 289, 345, 601, 622, 731, 750, 836
SsiI	CCGC	3 cut(s)	98, 560, 613
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	61, 760
TaiI	ACGT	2 cut(s)	239, 659
TaqI	TCGA	6 cut(s)	320, 357, 472, 699, 704, 727
TasI	AATT	9 cut(s)	227, 281, 289, 345, 601, 622, 731, 750, 836
TauI	GCSGC	2 cut(s)	562, 616
TfiI	GAWTC	4 cut(s)	164, 188, 368, 791
Tru1I	TTAA	4 cut(s)	44, 300, 681, 753
Tru9I	TTAA	4 cut(s)	44, 300, 681, 753
TscAI	CASTG	2 cut(s)	31, 837
TspDTI	ATGAA	5 cut(s)	57, 236, 341, 544, 776
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	31, 837
Vha464I	CTTAAG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	731
XhoI	CTCGAG	2 cut(s)	356, 471
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	1 cut(s)	116
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.