Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006373

Physical Location & Seq

Genomic Coordinates Forward (+)

1301748 .. 1304810

Gene Structure 3063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G009600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCAGCTTCTGCAAAGACTCTAACTGCTGAAAGCCATACTTTAAATGGAGACTGGACAGTTGTTTCATCTCGTCGTGGAAGACAAAGAAGAAATCCTCCAAAAATTACAATTCGAGTACAGAAGCAACCATCGCATTGGGCTCCAACTGATCTCGAAATCAATTTTGCCCGAGAATCAAAATTGATGCAGAAGATGCAGATCTGTATGAAGAAATTGGAGATGTCTCAATTCTTTCTTAATTTACTGGATGAAATCCAAACTCCAGAAATGATGAATTACTTCCATAGGGTTTTGAGCTCGGAGTTGAAGATGAAGATGGTTATATATGGCATAGGCAGCATCGAATCGTATGAATCCCCTCGGTTGCAGTTGAGCCTTGCCATCTTGCTGAAGAGAAAGTTCAATTGGATTGGAGATATAGAGGTCTTTGATCCCATTCTTTCTGCCACAGAATCTCGAGTTTTGGAAGCTCTCGAATGCTGTGTGTTATCAATAAATGAACAAGGTCGACGTCAGGCTGAGAAACCTACAATGTTCTTCATGCCACATTGCGAGGCAGAGCTATATGATAATCTTCTACAAGCAAATTGGGAAGCACGGCTTTTGAATTGTACAGTATTGTTTGGGAATAGCTTTGAGACATATGAGCAGCATCTATCAGAGTATAAAAACTCAGCTATTGTTGATTCGACAAGGCATATCTTAGCTGTTCGAAAATTCACAGATGAGTTTAGGATTAAGACAATTTCAGATACTTATTTCAGTGCCTTTCATGATTCGAGTTGGCATTTTTTCAGGCCTGTCCTTGAGACAGAGCTGCAGTTGAGCTATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0023052 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRR1

Protein Analysis

280

Amino Acids

32.61

Weight (kDa)

6.72

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59560 AT5G59560
fragaria_vesca	FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300
malus_domestica	MD02G1270100.v1.1 MD06G1045900.v1.1
prunus_persica	Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1
pyrus_communis	pycom02g23130 pycom06g03890
rosa_chinensis	RchiOBHm_Chr7g0215511
rosa_laevigata	RLG00000002653
rosa_multiflora	Rmu_sc0000898.1_g000109
rosa_roxburghii	Rroxscaffold_3G00244170
rosa_rugosa	Rorug07G0154400 Rorug07G0154500 Rorug07G0154600
rosa_samantha	Rh7AG290500 Rh7BG282700 Rh7CG310500 Rh7DG294300
rosa_wichuraiana	Rw7G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	511
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	1 cut(s)	719
AcuI	CTGAAG	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	2 cut(s)	120, 616
AgsI	TTSAA	3 cut(s)	310, 406, 610
AjuI	GAANNNNNNNTTGG	2 cut(s)	391, 423
AluBI	AGCT	9 cut(s)	8, 300, 473, 565, 636, 680, 710, 820, 831
AluI	AGCT	9 cut(s)	8, 300, 473, 565, 636, 680, 710, 820, 831
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	4 cut(s)	45, 231, 635, 806
AlwI	GGATC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	2 cut(s)	171, 459
AoxI	GGCC	1 cut(s)	800
ApeKI	GCWGC	4 cut(s)	5, 339, 652, 820
ApoI	RAATTY	1 cut(s)	719
Asp700I	GAANNNNTTC	1 cut(s)	281
AsuII	TTCGAA	1 cut(s)	715
AvaI	CYCGRG	2 cut(s)	171, 459
BanII	GRGCYC	2 cut(s)	145, 302
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	4 cut(s)	17, 351, 664, 807
BccI	CCATC	3 cut(s)	139, 313, 392
BceAI	ACGGC	1 cut(s)	617
BcoDI	GTCTC	4 cut(s)	45, 231, 635, 806
BfmI	CTRYAG	1 cut(s)	821
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	4 cut(s)	6, 340, 653, 821
BlsI	GCNGC	4 cut(s)	7, 341, 654, 822
BmeT110I	CYCGRG	2 cut(s)	171, 459
BmiI	GGNNCC	1 cut(s)	144
BmsI	GCATC	4 cut(s)	177, 186, 351, 664
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	715
BpuEI	CTTGAG	1 cut(s)	830
BsaBI	GATNNNNATC	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	59, 252
Bse3DI	GCAATG	1 cut(s)	550
Bse8I	GATNNNNATC	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	2 cut(s)	513, 690
BseNI	ACTGG	2 cut(s)	59, 252
BseXI	GCAGC	4 cut(s)	17, 351, 664, 807
BshFI	GGCC	1 cut(s)	802
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	2 cut(s)	171, 459
BsmAI	GTCTC	4 cut(s)	45, 231, 635, 806
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	802
BsoBI	CYCGRG	2 cut(s)	171, 459
Bsp119I	TTCGAA	1 cut(s)	715
Bsp1286I	GDGCHC	2 cut(s)	145, 302
Bsp1407I	TGTACA	1 cut(s)	614
Bsp143I	GATC	3 cut(s)	151, 201, 433
BspANI	GGCC	1 cut(s)	802
BspCNI	CTCAG	2 cut(s)	514, 689
BspHI	TCATGA	1 cut(s)	775
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	825
BspPI	GGATC	1 cut(s)	428
BspT104I	TTCGAA	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	550
BsrGI	TGTACA	1 cut(s)	614
BsrI	ACTGG	2 cut(s)	59, 252
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	3 cut(s)	151, 201, 433
BssNI	GRCGYC	1 cut(s)	514
Bst4CI	ACNGT	2 cut(s)	61, 619
Bst6I	CTCTTC	1 cut(s)	389
BstACI	GRCGYC	1 cut(s)	514
BstAPI	GCANNNNNTGC	2 cut(s)	11, 196
BstAUI	TGTACA	1 cut(s)	614
BstBI	TTCGAA	1 cut(s)	715
BstDEI	CTNAG	3 cut(s)	522, 676, 706
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	3 cut(s)	154, 204, 436
BstMAI	GTCTC	4 cut(s)	45, 231, 635, 806
BstMBI	GATC	3 cut(s)	151, 201, 433
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 133, 196, 339
BstSFI	CTRYAG	1 cut(s)	821
BstV1I	GCAGC	4 cut(s)	17, 351, 664, 807
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	201
BstXI	CCANNNNNNTGG	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	802
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	772
CaiI	CAGNNNCTG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	775
Csp6I	GTAC	2 cut(s)	119, 615
CviAII	CATG	2 cut(s)	544, 776
CviQI	GTAC	2 cut(s)	119, 615
DdeI	CTNAG	3 cut(s)	522, 676, 706
DpnI	GATC	3 cut(s)	153, 203, 435
DpnII	GATC	3 cut(s)	151, 201, 433
DraI	TTTAAA	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Ecl136II	GAGCTC	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	802
Eco24I	GRGCYC	2 cut(s)	145, 302
Eco53kI	GAGCTC	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	413
Eco88I	CYCGRG	2 cut(s)	171, 459
EcoICRI	GAGCTC	1 cut(s)	300
EcoT38I	GRGCYC	2 cut(s)	145, 302
FaeI	CATG	2 cut(s)	547, 779
FalI	AAGNNNNNCTT	4 cut(s)	25, 57, 588, 620
FatI	CATG	2 cut(s)	543, 775
FauNDI	CATATG	1 cut(s)	646
FblI	GTMKAC	1 cut(s)	511
Fnu4HI	GCNGC	4 cut(s)	6, 340, 653, 821
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	2 cut(s)	145, 302
Fsp4HI	GCNGC	4 cut(s)	6, 340, 653, 821
GluI	GCNGC	4 cut(s)	6, 340, 653, 821
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	802
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	2 cut(s)	547, 779
HincII	GTYRAC	1 cut(s)	512
HindII	GTYRAC	1 cut(s)	512
HinfI	GANTC	7 cut(s)	19, 176, 347, 356, 455, 689, 779
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	3 cut(s)	304, 664, 754
Hpy188III	TCNNGA	5 cut(s)	155, 266, 459, 476, 776
Hpy8I	GTNNAC	1 cut(s)	512
Hpy99I	CGWCG	2 cut(s)	78, 516
HpyCH4III	ACNGT	2 cut(s)	61, 619
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	5 cut(s)	14, 190, 199, 370, 823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 133, 196, 339
HpyF3I	CTNAG	3 cut(s)	522, 676, 706
HpySE526I	ACGT	1 cut(s)	514
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	2 cut(s)	547, 779
Kzo9I	GATC	3 cut(s)	151, 201, 433
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	6 cut(s)	40, 233, 279, 503, 784, 816
Lsp1109I	GCAGC	4 cut(s)	17, 351, 664, 807
LweI	GCATC	4 cut(s)	177, 186, 351, 664
MaeII	ACGT	1 cut(s)	514
MalI	GATC	3 cut(s)	153, 203, 435
MboI	GATC	3 cut(s)	151, 201, 433
MboII	GAAGA	9 cut(s)	93, 102, 205, 223, 322, 328, 406, 532, 569
MfeI	CAATTG	1 cut(s)	406
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	145, 302
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	4 cut(s)	108, 372, 418, 550
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	3 cut(s)	44, 240, 741
MunI	CAATTG	1 cut(s)	406
Mva1269I	GAATGC	1 cut(s)	485
MwoI	GCNNNNNNNGC	4 cut(s)	11, 133, 196, 339
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	3 cut(s)	151, 201, 433
NlaIII	CATG	2 cut(s)	547, 779
NlaIV	GGNNCC	1 cut(s)	144
NspV	TTCGAA	1 cut(s)	715
PaeR7I	CTCGAG	1 cut(s)	459
PagI	TCATGA	1 cut(s)	775
PceI	AGGCCT	1 cut(s)	802
PctI	GAATGC	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	6 cut(s)	176, 347, 356, 455, 689, 779
PkrI	GCNGC	4 cut(s)	7, 341, 654, 822
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	825
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	201
RsaI	GTAC	2 cut(s)	120, 616
RsaNI	GTAC	2 cut(s)	119, 615
SacI	GAGCTC	1 cut(s)	302
SalI	GTCGAC	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	44, 240, 741
SatI	GCNGC	4 cut(s)	6, 340, 653, 821
Sau3AI	GATC	3 cut(s)	151, 201, 433
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	145, 302
SfaNI	GCATC	4 cut(s)	177, 186, 351, 664
SfcI	CTRYAG	1 cut(s)	821
Sfr274I	CTCGAG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	715
SlaI	CTCGAG	1 cut(s)	459
SmlI	CTYRAG	2 cut(s)	459, 809
SmoI	CTYRAG	2 cut(s)	459, 809
SseBI	AGGCCT	1 cut(s)	802
SstI	GAGCTC	1 cut(s)	302
StuI	AGGCCT	1 cut(s)	802
TaaI	ACNGT	2 cut(s)	61, 619
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	9 cut(s)	115, 156, 345, 460, 477, 511, 692, 715, 782
TatI	WGTACW	2 cut(s)	118, 614
TfiI	GAWTC	6 cut(s)	176, 347, 356, 455, 689, 779
Tru1I	TTAA	3 cut(s)	44, 240, 741
Tru9I	TTAA	3 cut(s)	44, 240, 741
TscAI	CASTG	1 cut(s)	772
TseI	GCWGC	4 cut(s)	5, 339, 652, 820
TspDTI	ATGAA	9 cut(s)	57, 224, 267, 290, 329, 369, 516, 532, 764
TspRI	CASTG	1 cut(s)	772
XapI	RAATTY	1 cut(s)	719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XhoI	CTCGAG	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	511
XmnI	GAANNNNTTC	1 cut(s)	281
ZraI	GACGTC	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.