Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006373

Physical Location & Seq

Genomic Coordinates Forward (+)

12220802 .. 12222326

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0154500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTGAGAAGATCCAACAGGCCTTGGCATCAGTCAAAGGATACACTACCAGAAAAGATGAGCAACTACCTACCTTCCAATCTGAGGAGGAGCTCAAACGACAGAAGAGGATCAAATTGTTTAAATATATTGGTATTTTCATTGTGTTCCAAATCATAGTCATGACCGTGTTTGGTCTCACCGTGATGAAAGTGAAAACACCTAAGGTGAGATTGGGAGCCATCAGTGTCCAAGAGCTCACCTCTGTCCCTGCAACACCTTCGTTCAACACAAGCTTCACAACCCAAATCAGGGTCAAGAACACAAATTGGGGTCCCTATAAGTTTGATGCAGGCATTGCAACATTCATGTACCAAGGCGTGCCTGTGGGGCAAGTTGCTATTCCTAAGAGCAAAGCTGGAATGCGCTCCACCAAGAAGATCAACGTCGAAGTGAGTTTAAACACTGATGCATTGCCAAGCAGTTCAACTCTTAGCAATGAATTGAACAGCGGGGTGTTGACGCTGACCAGCCAAGCAAAATTGACCGGAAAGGTTGAATTGATGCTCATAATGAAGAAGAAGAAGTCTGCCAATATGGACTGCACCATAGCTTTTGATTTATCCACAAAGACGGTCAAAAGTTTACAATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0023052 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRR1

Protein Analysis

212

Amino Acids

23.44

Weight (kDa)

9.98

Isoelectric Point (pI)

28.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	97 - 196	1.3e-06	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59560 AT5G59560
fragaria_vesca	FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300
malus_domestica	MD02G1270100.v1.1 MD06G1045900.v1.1
prunus_persica	Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1
pyrus_communis	pycom02g23130 pycom06g03890
rosa_chinensis	RchiOBHm_Chr7g0215511
rosa_laevigata	RLG00000002653
rosa_multiflora	Rmu_sc0000898.1_g000109
rosa_roxburghii	Rroxscaffold_3G00244170
rosa_rugosa	Rorug07G0154400 Rorug07G0154500 Rorug07G0154600
rosa_samantha	Rh7AG290500 Rh7BG282700 Rh7CG310500 Rh7DG294300
rosa_wichuraiana	Rw7G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	2 cut(s)	7, 119
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	85, 291, 292
AgsI	TTSAA	4 cut(s)	268, 468, 487, 539
AluBI	AGCT	5 cut(s)	94, 238, 276, 398, 593
AluI	AGCT	5 cut(s)	94, 238, 276, 398, 593
Alw21I	GWGCWC	2 cut(s)	96, 240
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	2 cut(s)	7, 119
AoxI	GGCC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	3 cut(s)	172, 220, 232
AvaII	GGWCC	1 cut(s)	314
AxyI	CCTNAGG	1 cut(s)	204
BanII	GRGCYC	2 cut(s)	96, 240
Bbv12I	GWGCWC	2 cut(s)	96, 240
BccI	CCATC	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	243, 277
BciVI	GTATCC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	3 cut(s)	220, 315, 316
BmsI	GCATC	4 cut(s)	38, 319, 439, 534
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	24, 355
BsaWI	WCCGGW	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 291, 292
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	3 cut(s)	336, 452, 484
BseDI	CCNNGG	2 cut(s)	24, 355
BseLI	CCNNNNNNNGG	3 cut(s)	85, 291, 292
BseMI	GCAATG	3 cut(s)	336, 452, 484
BseMII	CTCAG	1 cut(s)	75
BseRI	GAGGAG	2 cut(s)	101, 104
BsgI	GTGCAG	1 cut(s)	568
BshFI	GGCC	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	96, 240
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	2 cut(s)	233, 300
BslI	CCNNNNNNNGG	3 cut(s)	85, 291, 292
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	2 cut(s)	233, 300
BsmI	GAATGC	1 cut(s)	408
BsnI	GGCC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	96, 240
Bsp143I	GATC	3 cut(s)	12, 111, 420
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	3 cut(s)	220, 315, 316
BspPI	GGATC	2 cut(s)	7, 119
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	3 cut(s)	336, 452, 484
BssECI	CCNNGG	2 cut(s)	24, 355
BssMI	GATC	3 cut(s)	12, 111, 420
BssT1I	CCWWGG	2 cut(s)	24, 355
Bst4CI	ACNGT	3 cut(s)	169, 184, 616
Bst6I	CTCTTC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	334, 362
BstDEI	CTNAG	5 cut(s)	6, 84, 204, 387, 473
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	3 cut(s)	15, 114, 423
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	12, 111, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 370
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	232, 444
Cac8I	GCNNGC	2 cut(s)	334, 362
CciI	TCATGA	1 cut(s)	162
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	1 cut(s)	511
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	163, 349
CviJI	RGCY	9 cut(s)	5, 23, 94, 221, 238, 276, 398, 513, 593
CviKI_1	RGCY	9 cut(s)	5, 23, 94, 221, 238, 276, 398, 513, 593
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	5 cut(s)	6, 84, 204, 387, 473
DpnI	GATC	3 cut(s)	14, 113, 422
DpnII	GATC	3 cut(s)	12, 111, 420
DraI	TTTAAA	2 cut(s)	124, 441
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	2 cut(s)	94, 238
Eco130I	CCWWGG	2 cut(s)	24, 355
Eco147I	AGGCCT	1 cut(s)	23
Eco24I	GRGCYC	2 cut(s)	96, 240
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	314
Eco53kI	GAGCTC	2 cut(s)	94, 238
Eco81I	CCTNAGG	1 cut(s)	204
EcoICRI	GAGCTC	2 cut(s)	94, 238
EcoO109I	RGGNCCY	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	24, 355
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	2 cut(s)	96, 240
ErhI	CCWWGG	2 cut(s)	24, 355
FaeI	CATG	2 cut(s)	166, 352
FaiI	YATR	8 cut(s)	129, 158, 164, 321, 350, 551, 578, 590
FaqI	GGGAC	2 cut(s)	233, 300
FatI	CATG	2 cut(s)	162, 348
FauI	CCCGC	1 cut(s)	485
FriOI	GRGCYC	2 cut(s)	96, 240
GlaI	GCGC	1 cut(s)	407
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	528
HgaI	GACGC	1 cut(s)	511
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	166, 352
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	274
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	3 cut(s)	172, 220, 232
Hpy166II	GTNNAC	2 cut(s)	501, 626
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	163, 298
Hpy8I	GTNNAC	2 cut(s)	501, 626
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	2 cut(s)	85, 270
HpyCH4III	ACNGT	3 cut(s)	169, 184, 616
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	6 cut(s)	254, 332, 341, 452, 585, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 370
HpyF3I	CTNAG	5 cut(s)	6, 84, 204, 387, 473
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	2 cut(s)	166, 352
HspAI	GCGC	1 cut(s)	406
KflI	GGGWCCC	1 cut(s)	314
Kzo9I	GATC	3 cut(s)	12, 111, 420
LmnI	GCTCC	3 cut(s)	91, 218, 413
LpnPI	CCDG	9 cut(s)	5, 64, 264, 277, 318, 378, 384, 523, 541
LweI	GCATC	4 cut(s)	38, 319, 439, 534
MaeII	ACGT	1 cut(s)	426
MalI	GATC	3 cut(s)	14, 113, 422
MboI	GATC	3 cut(s)	12, 111, 420
MboII	GAAGA	6 cut(s)	22, 118, 430, 568, 571, 574
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	2 cut(s)	96, 240
MluCI	AATT	5 cut(s)	116, 307, 482, 521, 539
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	4 cut(s)	79, 82, 102, 253
Mph1103I	ATGCAT	1 cut(s)	454
MseI	TTAA	2 cut(s)	123, 440
MslI	CAYNNNNRTG	3 cut(s)	161, 167, 185
MspA1I	CMGCKG	1 cut(s)	492
MspI	CCGG	1 cut(s)	528
MssI	GTTTAAAC	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	338, 370
NdeII	GATC	3 cut(s)	12, 111, 420
NlaIII	CATG	2 cut(s)	166, 352
NlaIV	GGNNCC	3 cut(s)	220, 315, 316
NsiI	ATGCAT	1 cut(s)	454
PagI	TCATGA	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	23
PctI	GAATGC	1 cut(s)	408
PmeI	GTTTAAAC	1 cut(s)	441
PpuMI	RGGWCCY	1 cut(s)	314
Psp124BI	GAGCTC	2 cut(s)	96, 240
Psp5II	RGGWCCY	1 cut(s)	314
PspN4I	GGNNCC	3 cut(s)	220, 315, 316
PspPI	GGNCC	1 cut(s)	314
PspPPI	RGGWCCY	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	3 cut(s)	161, 167, 185
SacI	GAGCTC	2 cut(s)	96, 240
SaqAI	TTAA	2 cut(s)	123, 440
Sau3AI	GATC	3 cut(s)	12, 111, 420
Sau96I	GGNCC	1 cut(s)	314
SduI	GDGCHC	2 cut(s)	96, 240
SfaNI	GCATC	4 cut(s)	38, 319, 439, 534
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	3 cut(s)	161, 167, 185
Sse9I	AATT	5 cut(s)	116, 307, 482, 521, 539
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	492
SstI	GAGCTC	2 cut(s)	96, 240
StuI	AGGCCT	1 cut(s)	23
StyI	CCWWGG	2 cut(s)	24, 355
TaaI	ACNGT	3 cut(s)	169, 184, 616
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	429
TasI	AATT	5 cut(s)	116, 307, 482, 521, 539
Tru1I	TTAA	2 cut(s)	123, 440
Tru9I	TTAA	2 cut(s)	123, 440
TscAI	CASTG	2 cut(s)	232, 451
TspDTI	ATGAA	5 cut(s)	130, 203, 337, 495, 569
TspRI	CASTG	2 cut(s)	232, 451
VpaK11BI	GGWCC	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.