Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006373

Physical Location & Seq

Genomic Coordinates Reverse (-)

37573540 .. 37578148

Gene Structure 4609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002653

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGGTCGGATAATGTTGGTAGATGAGGTGAGTTATGCTGACTGGGATAGTATTTGTGACCCACGGTTTCTTTTGGACATCTTAGTGAAGCAACACCCTCAACGCTGTTGCCACATCAAGCAGGACTTGGGTGTGGAGTTGAATTGGAGCTGTACCATATGCAACAGATTTGATGCTCTTTGTACATTAAATGGAGACTGGACAGTTGTTTCATCTCGTCGTGGAAGACAAAGAAGAAATCCTCCCATACTGAAAAGTCTTGTAGAGAAACAGCAACAACAACAAACTTGGGCTCCAACTGATATTGAAATCAATTTTGTTCGAGAATCAAAATTGATGCAGAAGATACAGATCTGTATGAAGAAATTAGAGCTTTCTCAATTCTATCTTAACTTGCTGGATCAAATGCAAACTCCAGAGATGATGAATTGCTTCCATAGAGTTTTAAGTTCCGAGTTGAAGATGAAGATGGTAATATACGGCATAGGCAGCATTGAATCATATGAATCCCCTCGATTGCAGTTGAGCCTCGCCATCTTGTTGAAAAGAAGGTTCAATTGGATTGGAGATATAGAGGTGTTTGATCCTATACTTTCTTCCACAGAATCTCGGGTTTTGGAAGCTCTTGGTTGCTCTGTGTTATCTATTAATGAGCAAGGTCGGCGTGAGGCTAAAAAACCAACGATGTTTTTCATGCCACATTGTGAGGCTGAGTTATATGATAATCTTTTACAAGCGAATTGGGGAGTGCGGCAGTTGAATTGTATAGTATTGTTTGGGAATAGCTTTCAGACATATGAGCAGCATCTATTAGAGTTCAAGAACTCGGCTATCATTCAATCCACCAACTATATCCTGGCTGTCCGAAGATTCACAAATGAATTTAGTATCAAGACAGTTTCAGATGATTATTTTGGTGCTTTTCATGATTCAAGTTGGCAATTTTTCAGCCCTGTCCTTGAAACAGAGATGCAGTTGAGCAATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0023052 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRR1

Protein Analysis

330

Amino Acids

38.39

Weight (kDa)

6.12

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRR1	PF07985	150 - 315	5.7e-42	SRR1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59560 AT5G59560
fragaria_vesca	FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300
malus_domestica	MD02G1270100.v1.1 MD06G1045900.v1.1
prunus_persica	Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1
pyrus_communis	pycom02g23130 pycom06g03890
rosa_chinensis	RchiOBHm_Chr7g0215511
rosa_laevigata	RLG00000002653
rosa_multiflora	Rmu_sc0000898.1_g000109
rosa_roxburghii	Rroxscaffold_3G00244170
rosa_rugosa	Rorug07G0154400 Rorug07G0154500 Rorug07G0154600
rosa_samantha	Rh7AG290500 Rh7BG282700 Rh7CG310500 Rh7DG294300
rosa_wichuraiana	Rw7G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	751
AclWI	GGATC	2 cut(s)	408, 578
AcsI	RAATTY	1 cut(s)	881
AdeI	CACNNNGTG	1 cut(s)	704
AfaI	GTAC	2 cut(s)	154, 184
AjnI	CCWGG	1 cut(s)	855
AjuI	GAANNNNNNNTTGG	2 cut(s)	541, 573
AluBI	AGCT	4 cut(s)	150, 373, 623, 786
AluI	AGCT	4 cut(s)	150, 373, 623, 786
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	2 cut(s)	408, 578
Ama87I	CYCGRG	1 cut(s)	609
ApeKI	GCWGC	2 cut(s)	489, 802
ApoI	RAATTY	1 cut(s)	881
AseI	ATTAAT	1 cut(s)	648
Asp700I	GAANNNNTTC	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	609
BanII	GRGCYC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	501, 814
BccI	CCATC	2 cut(s)	463, 542
BceAI	ACGGC	1 cut(s)	496
BciT130I	CCWGG	1 cut(s)	857
BcoDI	GTCTC	1 cut(s)	189
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	3 cut(s)	490, 752, 803
BlsI	GCNGC	3 cut(s)	491, 753, 804
Bme1390I	CCNGG	1 cut(s)	857
BmeT110I	CYCGRG	1 cut(s)	609
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	857
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	4 cut(s)	163, 327, 814, 960
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bse1I	ACTGG	2 cut(s)	47, 203
Bse8I	GATNNNNATC	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	857
BseDI	CCNNGG	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	702
BseNI	ACTGG	2 cut(s)	47, 203
BseXI	GCAGC	2 cut(s)	501, 814
BsiHKCI	CYCGRG	1 cut(s)	609
BsmAI	GTCTC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp1407I	TGTACA	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	351, 400, 583
BspACI	CCGC	1 cut(s)	751
BspCNI	CTCAG	1 cut(s)	703
BspHI	TCATGA	1 cut(s)	925
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	2 cut(s)	408, 578
BsrGI	TGTACA	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	47, 203
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	3 cut(s)	351, 400, 583
Bst2UI	CCWGG	1 cut(s)	857
Bst4CI	ACNGT	3 cut(s)	66, 205, 898
BstAUI	TGTACA	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	82, 711
BstDSI	CCRYGG	1 cut(s)	62
BstKTI	GATC	3 cut(s)	354, 403, 586
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	3 cut(s)	351, 400, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	489, 661
BstNI	CCWGG	1 cut(s)	857
BstSCI	CCNGG	1 cut(s)	855
BstV1I	GCAGC	2 cut(s)	501, 814
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	62
CciI	TCATGA	1 cut(s)	925
Csp6I	GTAC	2 cut(s)	153, 183
CviAII	CATG	2 cut(s)	694, 926
CviQI	GTAC	2 cut(s)	153, 183
DdeI	CTNAG	2 cut(s)	82, 711
DpnI	GATC	3 cut(s)	353, 402, 585
DpnII	GATC	3 cut(s)	351, 400, 583
DraIII	CACNNNGTG	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	609
EcoRII	CCWGG	1 cut(s)	855
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	2 cut(s)	697, 929
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	2 cut(s)	693, 925
FauNDI	CATATG	3 cut(s)	158, 502, 796
Fnu4HI	GCNGC	3 cut(s)	490, 752, 803
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	3 cut(s)	490, 752, 803
GluI	GCNGC	3 cut(s)	490, 752, 803
GsuI	CTGGAG	1 cut(s)	399
Hin1II	CATG	2 cut(s)	697, 929
HinfI	GANTC	6 cut(s)	326, 497, 506, 605, 870, 929
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	5 cut(s)	9, 454, 792, 866, 904
Hpy188III	TCNNGA	5 cut(s)	323, 416, 820, 892, 926
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	543
HpyCH4III	ACNGT	3 cut(s)	66, 205, 898
HpyCH4V	TGCA	5 cut(s)	162, 340, 409, 520, 973
HpyF10VI	GCNNNNNNNGC	2 cut(s)	489, 661
HpyF3I	CTNAG	2 cut(s)	82, 711
Hsp92II	CATG	2 cut(s)	697, 929
Kzo9I	GATC	3 cut(s)	351, 400, 583
LmnI	GCTCC	2 cut(s)	147, 298
LpnPI	CCDG	8 cut(s)	28, 107, 184, 383, 429, 842, 869, 966
Lsp1109I	GCAGC	2 cut(s)	501, 814
LweI	GCATC	4 cut(s)	163, 327, 814, 960
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	3 cut(s)	353, 402, 585
MboI	GATC	3 cut(s)	351, 400, 583
MboII	GAAGA	8 cut(s)	237, 246, 355, 373, 472, 478, 588, 879
MfeI	CAATTG	2 cut(s)	556, 982
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	8 cut(s)	19, 108, 252, 522, 539, 568, 661, 700
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	4 cut(s)	188, 390, 446, 648
MslI	CAYNNNNRTG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	857
MunI	CAATTG	2 cut(s)	556, 982
MvaI	CCWGG	1 cut(s)	857
MwoI	GCNNNNNNNGC	2 cut(s)	489, 661
NdeI	CATATG	3 cut(s)	158, 502, 796
NdeII	GATC	3 cut(s)	351, 400, 583
NlaIII	CATG	2 cut(s)	697, 929
NlaIV	GGNNCC	1 cut(s)	294
NmeAIII	GCCGAG	1 cut(s)	806
NmuCI	GTSAC	1 cut(s)	56
PagI	TCATGA	1 cut(s)	925
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	6 cut(s)	326, 497, 506, 605, 870, 929
PkrI	GCNGC	3 cut(s)	491, 753, 804
PshBI	ATTAAT	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	855
PspN4I	GGNNCC	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	2 cut(s)	154, 184
RsaNI	GTAC	2 cut(s)	153, 183
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	4 cut(s)	188, 390, 446, 648
SatI	GCNGC	3 cut(s)	490, 752, 803
Sau3AI	GATC	3 cut(s)	351, 400, 583
ScrFI	CCNGG	1 cut(s)	857
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	8 cut(s)	30, 152, 375, 554, 579, 625, 661, 788
SfaNI	GCATC	4 cut(s)	163, 327, 814, 960
SmiMI	CAYNNNNRTG	1 cut(s)	83
SsiI	CCGC	1 cut(s)	751
StyD4I	CCNGG	1 cut(s)	855
TaaI	ACNGT	3 cut(s)	66, 205, 898
TaqI	TCGA	2 cut(s)	322, 514
TatI	WGTACW	1 cut(s)	182
TauI	GCSGC	1 cut(s)	754
TfiI	GAWTC	6 cut(s)	326, 497, 506, 605, 870, 929
Tru1I	TTAA	4 cut(s)	188, 390, 446, 648
Tru9I	TTAA	4 cut(s)	188, 390, 446, 648
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	2 cut(s)	489, 802
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	8 cut(s)	201, 374, 440, 479, 519, 682, 894, 914
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	1 cut(s)	881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XmnI	GAANNNNTTC	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.