Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006373

Physical Location & Seq

Genomic Coordinates Reverse (-)

12218962 .. 12219910

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0154400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTGAGAAGATCAACCAGGCTTATCCTTTGGCACCAGCAAATGGTTACACAAGAAGTGACGGAGAATCTTTGGTCTCTGAAGATGAACTCAAACGCAGGAAGAGAATCAAATTGTTTACCTACATTGGTATATTTGTTGTTTTTCAGATCATAGTCATGACCGTGTTTGGTCTCACTGTGATGAAAGTCAAGACCCCAAAGGTGAGGTTGGGCGAAATCAGCATCACAAACTTTAACTCAGCTGCTGCAACTCCTTCATTTGACACAACCTTCAACACCCAAATCAGGATCAAGAACACCAACTGGGGTCCTTACAAATTTGATGCAGGCACTGTAACATTCATGTACCAAGGCACGCCTGTGGGGACAGTAGTGGTACCTAAGAGCAAAGCTGGAATGCGTTCCACCAAGAAGATCAACGTCGAGGTGAGTTTAAGCACTGATGCATTGCCAAACAGTTCAACTCTTAGCAGCGAATTGAACAGTGGGGTGTTGACGCTGACTAGCCAAGCCAAATTGACTGGGAAGGTGGAACTGATGCTCATAATGAAGAAGAAGAAGTCTGCCAATATGGACTGCACCATAGCTTTTGATTTGTCCACAAAAACTGTCAAAAGTTTACAGTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0023052 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRR1

Protein Analysis

211

Amino Acids

23.17

Weight (kDa)

9.85

Isoelectric Point (pI)

24.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	96 - 195	1.8e-07	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59560 AT5G59560
fragaria_vesca	FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300
malus_domestica	MD02G1270100.v1.1 MD06G1045900.v1.1
prunus_persica	Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1
pyrus_communis	pycom02g23130 pycom06g03890
rosa_chinensis	RchiOBHm_Chr7g0215511
rosa_laevigata	RLG00000002653
rosa_multiflora	Rmu_sc0000898.1_g000109
rosa_roxburghii	Rroxscaffold_3G00244170
rosa_rugosa	Rorug07G0154400 Rorug07G0154500 Rorug07G0154600
rosa_samantha	Rh7AG290500 Rh7BG282700 Rh7CG310500 Rh7DG294300
rosa_wichuraiana	Rw7G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	379
AccB1I	GGYRCC	2 cut(s)	34, 379
AccB7I	CCANNNNNTGG	1 cut(s)	44
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	350, 381
AfiI	CCNNNNNNNGG	2 cut(s)	44, 288
AgsI	TTSAA	3 cut(s)	277, 465, 484
AjnI	CCWGG	1 cut(s)	18
AleI	CACNNNNGTG	1 cut(s)	362
AluBI	AGCT	3 cut(s)	245, 395, 590
AluI	AGCT	3 cut(s)	245, 395, 590
Alw26I	GTCTC	2 cut(s)	82, 179
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	2 cut(s)	248, 335
ApeKI	GCWGC	3 cut(s)	245, 248, 474
ApoI	RAATTY	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	403
Asp718I	GGTACC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	217, 442
AvaII	GGWCC	1 cut(s)	311
BanI	GGYRCC	2 cut(s)	34, 379
BbvI	GCAGC	3 cut(s)	232, 235, 486
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	2 cut(s)	82, 179
BfaI	CTAG	1 cut(s)	507
BisI	GCNGC	3 cut(s)	246, 249, 475
BlsI	GCNGC	3 cut(s)	247, 250, 476
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	3 cut(s)	36, 312, 381
BmrFI	CCNGG	1 cut(s)	20
BmrI	ACTGGG	2 cut(s)	316, 534
BmsI	GCATC	4 cut(s)	234, 316, 436, 531
BmuI	ACTGGG	2 cut(s)	316, 534
BsaI	GGTCTC	2 cut(s)	82, 179
BsaJI	CCNNGG	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 288
Bse1I	ACTGG	2 cut(s)	311, 529
Bse3DI	GCAATG	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	352
BseLI	CCNNNNNNNGG	2 cut(s)	44, 288
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	311, 529
BseXI	GCAGC	3 cut(s)	232, 235, 486
BsgI	GTGCAG	1 cut(s)	565
BshNI	GGYRCC	2 cut(s)	34, 379
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	44, 288
BsmAI	GTCTC	2 cut(s)	82, 179
BsmFI	GGGAC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	405
Bso31I	GGTCTC	2 cut(s)	82, 179
Bsp143I	GATC	4 cut(s)	12, 150, 291, 417
BspCNI	CTCAG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	36, 312, 381
BspPI	GGATC	1 cut(s)	299
BspT107I	GGYRCC	2 cut(s)	34, 379
BspTNI	GGTCTC	2 cut(s)	82, 179
BsrDI	GCAATG	1 cut(s)	449
BsrI	ACTGG	2 cut(s)	311, 529
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	4 cut(s)	12, 150, 291, 417
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	8 cut(s)	166, 181, 337, 373, 461, 488, 613, 627
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	331, 359
BstDEI	CTNAG	4 cut(s)	6, 241, 384, 470
BstKTI	GATC	4 cut(s)	15, 153, 294, 420
BstMAI	GTCTC	2 cut(s)	82, 179
BstMBI	GATC	4 cut(s)	12, 150, 291, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstV1I	GCAGC	3 cut(s)	232, 235, 486
BtsIMutI	CAGTG	5 cut(s)	177, 333, 441, 493, 632
Cac8I	GCNNGC	2 cut(s)	331, 359
CaiI	CAGNNNCTG	2 cut(s)	248, 335
CciI	TCATGA	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	311
CseI	GACGC	1 cut(s)	508
Csp6I	GTAC	2 cut(s)	349, 380
CviAII	CATG	2 cut(s)	160, 346
CviJI	RGCY	7 cut(s)	5, 23, 245, 395, 510, 515, 590
CviKI_1	RGCY	7 cut(s)	5, 23, 245, 395, 510, 515, 590
CviQI	GTAC	2 cut(s)	349, 380
DdeI	CTNAG	4 cut(s)	6, 241, 384, 470
DpnI	GATC	4 cut(s)	14, 152, 293, 419
DpnII	GATC	4 cut(s)	12, 150, 291, 417
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	352
Eco31I	GGTCTC	2 cut(s)	82, 179
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	2 cut(s)	163, 349
FaiI	YATR	7 cut(s)	134, 155, 161, 347, 548, 575, 587
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	2 cut(s)	159, 345
Fnu4HI	GCNGC	3 cut(s)	246, 249, 475
Fsp4HI	GCNGC	3 cut(s)	246, 249, 475
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	3 cut(s)	246, 249, 475
HgaI	GACGC	1 cut(s)	508
Hin1II	CATG	2 cut(s)	163, 349
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	2 cut(s)	68, 108
HphI	GGTGA	2 cut(s)	217, 442
Hpy166II	GTNNAC	4 cut(s)	120, 498, 603, 623
Hpy188I	TCNGA	2 cut(s)	82, 150
Hpy188III	TCNNGA	4 cut(s)	160, 193, 289, 295
Hpy8I	GTNNAC	4 cut(s)	120, 498, 603, 623
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	3 cut(s)	267, 283, 523
HpyCH4III	ACNGT	8 cut(s)	166, 181, 337, 373, 461, 488, 613, 627
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	5 cut(s)	251, 329, 449, 582, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	4 cut(s)	6, 241, 384, 470
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	163, 349
KpnI	GGTACC	1 cut(s)	383
Kzo9I	GATC	4 cut(s)	12, 150, 291, 417
Lsp1109I	GCAGC	3 cut(s)	232, 235, 486
LweI	GCATC	4 cut(s)	234, 316, 436, 531
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	3 cut(s)	47, 59, 337
MalI	GATC	4 cut(s)	14, 152, 293, 419
MboI	GATC	4 cut(s)	12, 150, 291, 417
MboII	GAAGA	7 cut(s)	22, 95, 115, 427, 565, 568, 571
MluCI	AATT	4 cut(s)	113, 320, 479, 518
MnlI	CCTC	2 cut(s)	201, 421
Mph1103I	ATGCAT	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	2 cut(s)	237, 437
MslI	CAYNNNNRTG	4 cut(s)	158, 164, 182, 362
MspA1I	CMGCKG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	4 cut(s)	12, 150, 291, 417
NlaIII	CATG	2 cut(s)	163, 349
NlaIV	GGNNCC	3 cut(s)	36, 312, 381
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	451
OliI	CACNNNNGTG	1 cut(s)	362
PagI	TCATGA	1 cut(s)	159
PctI	GAATGC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	68, 108
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	247, 250, 476
PpuMI	RGGWCCY	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	36, 312, 381
PspPI	GGNCC	1 cut(s)	311
PspPPI	RGGWCCY	1 cut(s)	311
PstNI	CAGNNNCTG	2 cut(s)	248, 335
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	350, 381
RsaNI	GTAC	2 cut(s)	349, 380
RseI	CAYNNNNRTG	4 cut(s)	158, 164, 182, 362
SaqAI	TTAA	2 cut(s)	237, 437
SatI	GCNGC	3 cut(s)	246, 249, 475
Sau3AI	GATC	4 cut(s)	12, 150, 291, 417
Sau96I	GGNCC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	20
SfaNI	GCATC	4 cut(s)	234, 316, 436, 531
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	4 cut(s)	158, 164, 182, 362
Sse9I	AATT	4 cut(s)	113, 320, 479, 518
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	8 cut(s)	166, 181, 337, 373, 461, 488, 613, 627
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	1 cut(s)	426
TasI	AATT	4 cut(s)	113, 320, 479, 518
TfiI	GAWTC	2 cut(s)	68, 108
Tru1I	TTAA	2 cut(s)	237, 437
Tru9I	TTAA	2 cut(s)	237, 437
TscAI	CASTG	5 cut(s)	184, 340, 448, 493, 632
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	3 cut(s)	245, 248, 474
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	5 cut(s)	102, 200, 249, 334, 566
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	5 cut(s)	184, 340, 448, 493, 632
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	1 cut(s)	507
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.