RchiOBHm_Chr7g0215511

Protein SENSITIVITY TO RED LIGHT REDUCED

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006373
Physical Location & Seq
Forward (+)
33196686 .. 33201267
4582 bp
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UTR
Exon/CDS
Intron
PRQ19283

Sequence Viewer

Length: 441 bp
ATGGCATCTTCTGCAAAGACTGTCGTTGCTCCAGGTACATTAAATGGAGACTGGACAGTTGTTTCATCTCGTCGTGGAAGACAAAGAAGAAATCCTCCCATACTGAAAAGTCTTGTAGAGAAACAGCAACAACAACAAACTTGGGCTCCAACTGATATTGAAATCAATTTTGTTCGAGAATCAAAATTGATGCAGAAGATACAGATCTGTATGAAGAAATTGGAGCTTTCTCAGTTCTATCTTACCTTGCTGGATCAAATGCAAACTCCAGAGATGATGAATTGCTTCCATAGAGTTTTAAGTTCCGAGTTGAAGATGAAGATGGTAATATACGGCATAGGCAGCATTGAATCATATGAATCCCCTCGATTGCAGTTGAGCCTCGCCATCTTGTTGAAAAGAAGGTTCAATTGGATTGGAGATATAGAGGTGTCGGCGTGA

Protein Analysis

146

Amino Acids

16.85

Weight (kDa)

9.69

Isoelectric Point (pI)

63.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRR1 PF07985 101 - 144 9.5e-07 SRR1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 261
AfaI GTAC 1 cut(s) 37
AgsI TTSAA 5 cut(s) 161, 313, 350, 397, 409
AjnI CCWGG 1 cut(s) 31
AjuI GAANNNNNNNTTGG 2 cut(s) 394, 426
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 342
Asp700I GAANNNNTTC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 354
BccI CCATC 2 cut(s) 316, 395
BceAI ACGGC 1 cut(s) 349
BciT130I CCWGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 42
BglII AGATCT 1 cut(s) 204
BisI GCNGC 1 cut(s) 343
BlsI GCNGC 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 33
BmsI GCATC 2 cut(s) 14, 180
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 2 cut(s) 15, 252
BsaBI GATNNNNATC 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse1I ACTGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 203
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 2 cut(s) 204, 253
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 56
BssMI GATC 2 cut(s) 204, 253
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 22, 58
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 231
BstKTI GATC 2 cut(s) 207, 256
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 204, 253
BstMWI GCNNNNNNNGC 2 cut(s) 11, 342
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 354
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
Csp6I GTAC 1 cut(s) 36
CviJI RGCY 3 cut(s) 146, 226, 381
CviKI_1 RGCY 3 cut(s) 146, 226, 381
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 206, 255
DpnII GATC 2 cut(s) 204, 253
Eco24I GRGCYC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 148
FaiI YATR 8 cut(s) 101, 212, 291, 331, 338, 355, 357, 425
FauNDI CATATG 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 343
GsuI CTGGAG 2 cut(s) 15, 252
HinfI GANTC 3 cut(s) 179, 350, 359
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 176, 269
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 22, 58
HpyCH4V TGCA 4 cut(s) 14, 193, 262, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 342
HpyF3I CTNAG 1 cut(s) 231
Kzo9I GATC 2 cut(s) 204, 253
LmnI GCTCC 3 cut(s) 34, 151, 223
LpnPI CCDG 5 cut(s) 18, 37, 45, 236, 282
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 2 cut(s) 14, 180
MalI GATC 2 cut(s) 206, 255
MboI GATC 2 cut(s) 204, 253
MboII GAAGA 6 cut(s) 90, 99, 208, 226, 325, 331
MfeI CAATTG 1 cut(s) 409
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 5 cut(s) 166, 185, 218, 280, 409
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 4 cut(s) 105, 375, 392, 421
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 2 cut(s) 41, 299
MspR9I CCNGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 409
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 11, 342
NdeI CATATG 1 cut(s) 355
NdeII GATC 2 cut(s) 204, 253
NlaIV GGNNCC 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 3 cut(s) 179, 350, 359
PkrI GCNGC 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 147
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 41, 299
SatI GCNGC 1 cut(s) 343
Sau3AI GATC 2 cut(s) 204, 253
ScrFI CCNGG 1 cut(s) 33
SduI GDGCHC 1 cut(s) 148
SetI ASST 5 cut(s) 37, 228, 248, 407, 432
SfaNI GCATC 2 cut(s) 14, 180
Sse9I AATT 5 cut(s) 166, 185, 218, 280, 409
StyD4I CCNGG 1 cut(s) 31
TaaI ACNGT 2 cut(s) 22, 58
TaqI TCGA 2 cut(s) 175, 367
TasI AATT 5 cut(s) 166, 185, 218, 280, 409
TfiI GAWTC 3 cut(s) 179, 350, 359
Tru1I TTAA 2 cut(s) 41, 299
Tru9I TTAA 2 cut(s) 41, 299
TseI GCWGC 1 cut(s) 342
TspDTI ATGAA 5 cut(s) 54, 227, 293, 332, 372
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.