Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006373

Physical Location & Seq

Genomic Coordinates Forward (+)

4844246 .. 4845097

Gene Structure 852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCAGCTTCTGCAAAAACTCTGACTGCTGAGGACCATACTTTAAACGGGGAGTGGACAGTCGTTTCATCTCGTCGTGGAGTCAAAAGAAGAAAGACGCCCAGAATGCCAACCCTAGCGCAAAAGCTACAGCAACAGCAGCAGGAGCCTTGGGCTCCAACTGATTTCGAAATCAATTTTGTCCGAGAATCAAAACTGATGCAGAAGATGCAGATCTGTATGAAGAAATTGGAGATGTCTCAGTTCTTTCTCAATTTACTGGATCAAATTGGAACTCCGGAACTGACGAATTGCTTCCTTAGGGTTTTGAGCTCTGAATCAAAGATGAACGTGGTGATATATGGAATTGGCAGCCTTGAGACCTACGAGTCACCTCGATTGCAGTTGAGCCTTGCGATCTTGCTGAAGAGAAATGTCAGTTGGATTGGAGATATAGAGGTGTTTGATCCTGTTCTTTCTGCCACCGAAACTCGTGTTTTGGAAGCTCTTGGCTGCTCTGTGCTGTCTATAAACGAGCAAGGCCGGCGTCGGGCTCAAAAGCCGATGATGTTCTTCATGCCACATTGTGAGGCAGAGTTGTATGATAATCTTCTGCAGGCGAATTGGGAAGTGCAGCTGTTGGATTGCATTGTATTGTTTGGGAATAGCTTTGATACGTATGAGCAGCACCTGTCAGAGTTTAAGAACTCAGCCATTGTCGATTCCACAACCCGTATCTTAGCTGCTCGAAAATTCACAGATGAGTTTAAAATTAAGACAGTTTCCGATGATTATTTAGGTGCTTTTCATGATTCAAGTTGGCATTTTTTCAGCCCTGTCCTTGAGACAGAGCTGCTGTTGAGCAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0023052 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRR1

Protein Analysis

284

Amino Acids

32.52

Weight (kDa)

5.82

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRR1	PF07985	104 - 269	6.4e-42	SRR1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59560 AT5G59560
fragaria_vesca	FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300
malus_domestica	MD02G1270100.v1.1 MD06G1045900.v1.1
prunus_persica	Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1
pyrus_communis	pycom02g23130 pycom06g03890
rosa_chinensis	RchiOBHm_Chr7g0215511
rosa_laevigata	RLG00000002653
rosa_multiflora	Rmu_sc0000898.1_g000109
rosa_roxburghii	Rroxscaffold_3G00244170
rosa_rugosa	Rorug07G0154400 Rorug07G0154500 Rorug07G0154600
rosa_samantha	Rh7AG290500 Rh7BG282700 Rh7CG310500 Rh7DG294300
rosa_wichuraiana	Rw7G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	367
AccIII	TCCGGA	1 cut(s)	277
AclWI	GGATC	2 cut(s)	270, 440
AcsI	RAATTY	1 cut(s)	731
AcuI	CTGAAG	1 cut(s)	425
AcyI	GRCGYC	2 cut(s)	98, 526
AdeI	CACNNNGTG	1 cut(s)	566
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	1 cut(s)	795
AjuI	GAANNNNNNNTTGG	2 cut(s)	403, 435
AluBI	AGCT	8 cut(s)	8, 127, 312, 485, 616, 648, 722, 832
AluI	AGCT	8 cut(s)	8, 127, 312, 485, 616, 648, 722, 832
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	3 cut(s)	243, 353, 818
AlwI	GGATC	2 cut(s)	270, 440
AlwNI	CAGNNNCTG	2 cut(s)	11, 670
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	8 cut(s)	5, 139, 351, 492, 613, 664, 722, 832
ApoI	RAATTY	1 cut(s)	731
Asp700I	GAANNNNTTC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	346, 363
AsuII	TTCGAA	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	34
AxyI	CCTNAGG	1 cut(s)	299
BanII	GRGCYC	3 cut(s)	157, 314, 535
BauI	CACGAG	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	314
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	8 cut(s)	17, 151, 363, 479, 625, 676, 709, 819
BcoDI	GTCTC	3 cut(s)	243, 353, 818
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	2 cut(s)	128, 593
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	8 cut(s)	6, 140, 352, 493, 614, 665, 723, 833
BlsI	GCNGC	8 cut(s)	7, 141, 353, 494, 615, 666, 724, 834
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	147, 156
BmsI	GCATC	2 cut(s)	189, 198
Bpu10I	CCTNAGC	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	168
BpuEI	CTTGAG	2 cut(s)	377, 842
BsaAI	YACGTR	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	212
BsaHI	GRCGYC	2 cut(s)	98, 526
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse118I	RCCGGY	1 cut(s)	522
Bse1I	ACTGG	1 cut(s)	264
Bse21I	CCTNAGG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	212
BseAI	TCCGGA	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	149
BseJI	GATNNNNATC	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	3 cut(s)	21, 254, 702
BseNI	ACTGG	1 cut(s)	264
BseXI	GCAGC	8 cut(s)	17, 151, 363, 479, 625, 676, 709, 819
BsgI	GTGCAG	1 cut(s)	632
BshFI	GGCC	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	278, 523
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	3 cut(s)	243, 353, 818
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	522
Bso31I	GGTCTC	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	3 cut(s)	157, 314, 535
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	213, 262, 396, 445
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	3 cut(s)	22, 253, 701
BspEI	TCCGGA	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	2 cut(s)	147, 156
BspMAI	CTGCAG	1 cut(s)	597
BspPI	GGATC	2 cut(s)	270, 440
BspT104I	TTCGAA	1 cut(s)	168
BspTNI	GGTCTC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	264
BssAI	RCCGGY	1 cut(s)	522
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	4 cut(s)	213, 262, 396, 445
BssNI	GRCGYC	2 cut(s)	98, 526
BssSI	CACGAG	1 cut(s)	471
BssT1I	CCWWGG	1 cut(s)	149
Bst2BI	CACGAG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	61, 760
Bst6I	CTCTTC	1 cut(s)	401
BstACI	GRCGYC	2 cut(s)	98, 526
BstAPI	GCANNNNNTGC	2 cut(s)	11, 208
BstBAI	YACGTR	1 cut(s)	657
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	524, 597
BstDEI	CTNAG	5 cut(s)	30, 240, 299, 688, 718
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	4 cut(s)	216, 265, 399, 448
BstMAI	GTCTC	3 cut(s)	243, 353, 818
BstMBI	GATC	4 cut(s)	213, 262, 396, 445
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 106, 139, 145, 208, 523
BstSFI	CTRYAG	2 cut(s)	128, 593
BstSNI	TACGTA	1 cut(s)	657
BstV1I	GCAGC	8 cut(s)	17, 151, 363, 479, 625, 676, 709, 819
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	524, 597
CaiI	CAGNNNCTG	2 cut(s)	11, 670
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	522
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	2 cut(s)	106, 515
CviAII	CATG	2 cut(s)	556, 788
DdeI	CTNAG	5 cut(s)	30, 240, 299, 688, 718
DpnI	GATC	4 cut(s)	215, 264, 398, 447
DpnII	GATC	4 cut(s)	213, 262, 396, 445
DraI	TTTAAA	2 cut(s)	45, 748
DraIII	CACNNNGTG	1 cut(s)	566
DrdI	GACNNNNNNGTC	1 cut(s)	367
DseDI	GACNNNNNNGTC	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Ecl136II	GAGCTC	1 cut(s)	312
Eco105I	TACGTA	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	3 cut(s)	157, 314, 535
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	425
Eco81I	CCTNAGG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	3 cut(s)	157, 314, 535
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	2 cut(s)	559, 791
FatI	CATG	2 cut(s)	555, 787
Fnu4HI	GCNGC	8 cut(s)	6, 140, 352, 493, 614, 665, 723, 833
FriOI	GRGCYC	3 cut(s)	157, 314, 535
Fsp4HI	GCNGC	8 cut(s)	6, 140, 352, 493, 614, 665, 723, 833
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	8 cut(s)	6, 140, 352, 493, 614, 665, 723, 833
HaeIII	GGCC	1 cut(s)	522
HapII	CCGG	2 cut(s)	278, 523
HgaI	GACGC	2 cut(s)	106, 515
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	2 cut(s)	98, 526
Hin1II	CATG	2 cut(s)	559, 791
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	6 cut(s)	81, 188, 317, 368, 701, 791
HpaII	CCGG	2 cut(s)	278, 523
HphI	GGTGA	2 cut(s)	346, 363
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	5 cut(s)	24, 185, 316, 676, 766
Hpy188III	TCNNGA	2 cut(s)	278, 788
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	2 cut(s)	78, 531
HpyCH4III	ACNGT	2 cut(s)	61, 760
HpyCH4IV	ACGT	2 cut(s)	330, 656
HpyCH4V	TGCA	7 cut(s)	14, 202, 211, 382, 595, 613, 627
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 106, 139, 145, 208, 523
HpyF3I	CTNAG	5 cut(s)	30, 240, 299, 688, 718
HpySE526I	ACGT	2 cut(s)	330, 656
Hsp92I	GRCGYC	2 cut(s)	98, 526
Hsp92II	CATG	2 cut(s)	559, 791
HspAI	GCGC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	277
KroI	GCCGGC	1 cut(s)	522
KroNI	GCCGGC	1 cut(s)	524
Kzo9I	GATC	4 cut(s)	213, 262, 396, 445
LmnI	GCTCC	2 cut(s)	145, 160
LpnPI	CCDG	9 cut(s)	115, 128, 245, 291, 462, 536, 581, 683, 828
Lsp1109I	GCAGC	8 cut(s)	17, 151, 363, 479, 625, 676, 709, 819
LweI	GCATC	2 cut(s)	189, 198
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	2 cut(s)	330, 656
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	4 cut(s)	215, 264, 398, 447
MboI	GATC	4 cut(s)	213, 262, 396, 445
MboII	GAAGA	6 cut(s)	102, 217, 235, 418, 544, 581
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	3 cut(s)	157, 314, 535
MluCI	AATT	9 cut(s)	175, 227, 253, 267, 289, 345, 601, 731, 750
MlyI	GAGTC	2 cut(s)	90, 377
MmeI	TCCRAC	3 cut(s)	182, 401, 600
MnlI	CCTC	4 cut(s)	25, 384, 430, 562
MroI	TCCGGA	1 cut(s)	277
MroNI	GCCGGC	1 cut(s)	522
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	4 cut(s)	44, 681, 747, 753
MspA1I	CMGCKG	1 cut(s)	616
MspI	CCGG	2 cut(s)	278, 523
Mva1269I	GAATGC	1 cut(s)	111
MwoI	GCNNNNNNNGC	6 cut(s)	11, 106, 139, 145, 208, 523
NaeI	GCCGGC	1 cut(s)	524
NdeII	GATC	4 cut(s)	213, 262, 396, 445
NgoMIV	GCCGGC	1 cut(s)	522
NlaIII	CATG	2 cut(s)	559, 791
NlaIV	GGNNCC	2 cut(s)	147, 156
NmuCI	GTSAC	1 cut(s)	369
NspV	TTCGAA	1 cut(s)	168
PagI	TCATGA	1 cut(s)	787
PctI	GAATGC	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	4 cut(s)	188, 317, 701, 791
PkrI	GCNGC	8 cut(s)	7, 141, 353, 494, 615, 666, 724, 834
PleI	GAGTC	2 cut(s)	89, 376
PpsI	GAGTC	2 cut(s)	89, 376
Ppu21I	YACGTR	1 cut(s)	657
Psp124BI	GAGCTC	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	147, 156
PspPI	GGNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	597
PstNI	CAGNNNCTG	2 cut(s)	11, 670
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	616
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	44, 681, 747, 753
SatI	GCNGC	8 cut(s)	6, 140, 352, 493, 614, 665, 723, 833
Sau3AI	GATC	4 cut(s)	213, 262, 396, 445
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	2 cut(s)	90, 377
SduI	GDGCHC	3 cut(s)	157, 314, 535
SfaNI	GCATC	2 cut(s)	189, 198
SfcI	CTRYAG	2 cut(s)	128, 593
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	356, 821
SmoI	CTYRAG	2 cut(s)	356, 821
SnaBI	TACGTA	1 cut(s)	657
Sse9I	AATT	9 cut(s)	175, 227, 253, 267, 289, 345, 601, 731, 750
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	61, 760
TaiI	ACGT	2 cut(s)	333, 659
TaqI	TCGA	4 cut(s)	168, 376, 699, 727
TasI	AATT	9 cut(s)	175, 227, 253, 267, 289, 345, 601, 731, 750
TfiI	GAWTC	4 cut(s)	188, 317, 701, 791
Tru1I	TTAA	4 cut(s)	44, 681, 747, 753
Tru9I	TTAA	4 cut(s)	44, 681, 747, 753
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	8 cut(s)	5, 139, 351, 492, 613, 664, 722, 832
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	5 cut(s)	57, 236, 341, 544, 776
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.