FvH4_5g25300

Protein SENSITIVITY TO RED LIGHT REDUCED

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006373
Physical Location & Seq
Forward (+)
16800053 .. 16805668
5616 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25300.t4

Sequence Viewer

Length: 843 bp
ATGGCAGCTTCTGCAAAGACTCACGTTGCTGAAGGTACATTAAATGGAGACTGGACAGTTGTTTCATCTCGTCGGGGAAGACAAAGAAGAAATCCTCCCATACTGAAAAGTCTTGTAGAGAAACAGCAACAACAACAAACTTGGGCTCCAACTGATGTTGACATCAATTTTGTTCGAGAGTCAAAACTGATGCAGAAGATACAGATCTGTCTGAAGAAATTGGAGCTTTCTCAATTCTTTCTTAAGCTGCTGGATCAAATGCAAACTCCAGAGATGATGAATTTCTTCCATAGGGTTTTAAGTTCCGAGTTAAAGATGAAGATGGTAATATACGGCATAGGCAGCATTGAATCTTATGAATCCCCTCGGTTGCAGTTGAGCCTTGCCATCTTGCTGAAGAGAAGGTTCAATTGGATTGGAGATATAGAGGTGTTTGATCCTATTCTTTCTTCCACAGAATCTCGTGTTCTGGAAGCTCTTGGTTGCTCTGTGTTATCTATTAATGAACAAGGTCGGCGTGAGGCTCAAAAAGCAACGATGTTTTTCATGCCACATTGTGAGGCTGAATTATATGACAATCTTTTACAAACAAATTGGAGAGTGCAGCAGTTGAATTGTATAGTTTTGTTTGGGAATAGCTTTCAGACATATGAGCATCATCTGTTAGAGTTCAAGAACTCGGCTATTATTTACTCCACCAAGTATATCCTGGCTGCTCGAAGATTTATAAATGAGTTCAATATTGAGACAGTTTCAGATGATTATTTTGGTGCTTTTCATGATTCAAGTTGGCAGTTTTTCAGCCCTGTCCTTGAAACAGAGCTTCAGCTGAGCAATTGCTGA

Protein Analysis

281

Amino Acids

32.55

Weight (kDa)

6.61

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRR1 PF07985 101 - 266 1.4e-40 SRR1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 728
AclWI GGATC 2 cut(s) 261, 431
AcsI RAATTY 1 cut(s) 280
AcuI CTGAAG 4 cut(s) 51, 233, 416, 809
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 1 cut(s) 37
AflII CTTAAG 1 cut(s) 242
AgsI TTSAA 7 cut(s) 350, 409, 613, 673, 739, 786, 815
AjnI CCWGG 1 cut(s) 708
AjuI GAANNNNNNNTTGG 2 cut(s) 394, 426
AluBI AGCT 7 cut(s) 8, 226, 247, 476, 639, 823, 829
AluI AGCT 7 cut(s) 8, 226, 247, 476, 639, 823, 829
Alw26I GTCTC 2 cut(s) 42, 740
AlwI GGATC 2 cut(s) 261, 431
AlwNI CAGNNNCTG 1 cut(s) 11
ApeKI GCWGC 5 cut(s) 5, 247, 342, 604, 713
ApoI RAATTY 1 cut(s) 280
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AseI ATTAAT 1 cut(s) 501
Asp700I GAANNNNTTC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 148
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 5 cut(s) 17, 234, 354, 616, 700
BccI CCATC 2 cut(s) 316, 395
BceAI ACGGC 1 cut(s) 349
BciT130I CCWGG 1 cut(s) 710
BcoDI GTCTC 2 cut(s) 42, 740
BfrI CTTAAG 1 cut(s) 242
BglII AGATCT 1 cut(s) 204
BisI GCNGC 5 cut(s) 6, 248, 343, 605, 714
BlpI GCTNAGC 1 cut(s) 830
BlsI GCNGC 5 cut(s) 7, 249, 344, 606, 715
Bme1390I CCNGG 1 cut(s) 710
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 710
BmsI GCATC 2 cut(s) 180, 664
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 252
Bpu1102I GCTNAGC 1 cut(s) 830
BsaBI GATNNNNATC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse1I ACTGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 1 cut(s) 365
BseJI GATNNNNATC 1 cut(s) 203
BseMII CTCAG 1 cut(s) 821
BseNI ACTGG 1 cut(s) 56
BseXI GCAGC 5 cut(s) 17, 234, 354, 616, 700
BsgI GTGCAG 1 cut(s) 623
BsmAI GTCTC 2 cut(s) 42, 740
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 3 cut(s) 204, 253, 436
Bsp1720I GCTNAGC 1 cut(s) 830
BspCNI CTCAG 1 cut(s) 822
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 2 cut(s) 261, 431
BspTI CTTAAG 1 cut(s) 242
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 3 cut(s) 204, 253, 436
BssSI CACGAG 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 2 cut(s) 58, 751
Bst6I CTCTTC 1 cut(s) 392
BstAFI CTTAAG 1 cut(s) 242
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 830
BstKTI GATC 3 cut(s) 207, 256, 439
BstMAI GTCTC 2 cut(s) 42, 740
BstMBI GATC 3 cut(s) 204, 253, 436
BstMWI GCNNNNNNNGC 3 cut(s) 11, 342, 530
BstNI CCWGG 1 cut(s) 710
BstSCI CCNGG 1 cut(s) 708
BstV1I GCAGC 5 cut(s) 17, 234, 354, 616, 700
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
CaiI CAGNNNCTG 1 cut(s) 11
CciI TCATGA 1 cut(s) 778
Csp6I GTAC 1 cut(s) 36
CviAII CATG 2 cut(s) 547, 779
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 1 cut(s) 830
DpnI GATC 3 cut(s) 206, 255, 438
DpnII GATC 3 cut(s) 204, 253, 436
DraIII CACNNNGTG 1 cut(s) 557
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 148
Eco57I CTGAAG 4 cut(s) 51, 233, 416, 809
EcoRII CCWGG 1 cut(s) 708
EcoT38I GRGCYC 1 cut(s) 148
FaeI CATG 2 cut(s) 550, 782
FatI CATG 2 cut(s) 546, 778
FauNDI CATATG 1 cut(s) 649
Fnu4HI GCNGC 5 cut(s) 6, 248, 343, 605, 714
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 5 cut(s) 6, 248, 343, 605, 714
GluI GCNGC 5 cut(s) 6, 248, 343, 605, 714
GsuI CTGGAG 1 cut(s) 252
Hin1II CATG 2 cut(s) 550, 782
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 6 cut(s) 19, 179, 350, 359, 458, 782
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 4 cut(s) 213, 307, 645, 757
Hpy188III TCNNGA 5 cut(s) 176, 269, 470, 673, 779
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 2 cut(s) 26, 396
HpyCH4III ACNGT 2 cut(s) 58, 751
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 5 cut(s) 14, 193, 262, 373, 604
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 342, 530
HpyF3I CTNAG 1 cut(s) 830
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 2 cut(s) 550, 782
Kzo9I GATC 3 cut(s) 204, 253, 436
LmnI GCTCC 2 cut(s) 151, 223
LpnPI CCDG 7 cut(s) 37, 236, 282, 455, 695, 722, 819
Lsp1109I GCAGC 5 cut(s) 17, 234, 354, 616, 700
LweI GCATC 2 cut(s) 180, 664
MaeII ACGT 1 cut(s) 24
MalI GATC 3 cut(s) 206, 255, 438
MboI GATC 3 cut(s) 204, 253, 436
MboII GAAGA 9 cut(s) 90, 99, 208, 226, 277, 331, 409, 441, 732
MfeI CAATTG 2 cut(s) 409, 835
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 9 cut(s) 166, 218, 233, 280, 409, 566, 592, 613, 835
MlyI GAGTC 2 cut(s) 13, 188
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 5 cut(s) 105, 375, 421, 514, 553
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 5 cut(s) 41, 243, 299, 311, 501
MspA1I CMGCKG 1 cut(s) 829
MspCI CTTAAG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 710
MunI CAATTG 2 cut(s) 409, 835
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 3 cut(s) 11, 342, 530
NdeI CATATG 1 cut(s) 649
NdeII GATC 3 cut(s) 204, 253, 436
NlaIII CATG 2 cut(s) 550, 782
NlaIV GGNNCC 1 cut(s) 147
NmeAIII GCCGAG 1 cut(s) 659
PagI TCATGA 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 4 cut(s) 350, 359, 458, 782
PkrI GCNGC 5 cut(s) 7, 249, 344, 606, 715
PleI GAGTC 2 cut(s) 13, 187
PpsI GAGTC 2 cut(s) 13, 187
PshBI ATTAAT 1 cut(s) 501
PsiI TTATAA 1 cut(s) 728
Psp6I CCWGG 1 cut(s) 708
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 11
PsuI RGATCY 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 829
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 5 cut(s) 41, 243, 299, 311, 501
SatI GCNGC 5 cut(s) 6, 248, 343, 605, 714
Sau3AI GATC 3 cut(s) 204, 253, 436
SchI GAGTC 2 cut(s) 13, 188
ScrFI CCNGG 1 cut(s) 710
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 2 cut(s) 180, 664
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 9 cut(s) 166, 218, 233, 280, 409, 566, 592, 613, 835
SspI AATATT 1 cut(s) 742
StyD4I CCNGG 1 cut(s) 708
TaaI ACNGT 2 cut(s) 58, 751
TaiI ACGT 1 cut(s) 27
TaqI TCGA 2 cut(s) 175, 718
TasI AATT 9 cut(s) 166, 218, 233, 280, 409, 566, 592, 613, 835
TfiI GAWTC 4 cut(s) 350, 359, 458, 782
Tru1I TTAA 5 cut(s) 41, 243, 299, 311, 501
Tru9I TTAA 5 cut(s) 41, 243, 299, 311, 501
TseI GCWGC 5 cut(s) 5, 247, 342, 604, 713
TspDTI ATGAA 7 cut(s) 54, 293, 332, 372, 519, 535, 767
Vha464I CTTAAG 1 cut(s) 242
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 1 cut(s) 280
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.