Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009474

Physical Location & Seq

Genomic Coordinates Forward (+)

24003888 .. 24007844

Gene Structure 3957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGGAAGGAAGTTATGGTGAGCGATTACGGTGACGACGACGGAGAAGACGCCGGCGGCGGCGATGAATATAGGATTCCGGAATGGGAAATTGGTTTACCCAACGGAGATGATTTGACTCCGTTATCTCAATATCTAGTCCCGTCGATTCTCGCGTTAGCTTTCAGCATGATCCCAGAACGAAGCCGTACAATTCACGACGTCAATCGCGCGTCGCAAATCACGCTCTCTTCGTTGAGAAGCAGTACCAATGCTTCGTCTGTGATGGAGGAGGTCGTGGATCGAGTTGAATCGAGTGTTCCAGGATCAGATCCGAAGAAACAGAAGAAATCGGATGGTGGTGAAGCAGCGGCGGTGGAGGATTCCACGGCGGAGGAAGGAGACTCCGGGCCTGAAGACGCGTCTGGGAAGACATCGAAACGACCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTTGTGGACGTTGTGGCTCATCTAGGGATTAAAAACGCAGTGCCGAAGACGATTATGCAGCTGATGAACGTGGAAGGACTTACTCGTGAGAACGTTGCGTCTCATTTGCAGAAATATAGGCTTTACCTTAAACGGATTCAAGGATTGACGACGGAAGAAGATCCTTATTCGTCGTCGGATCAGCTCTTCTCTTCAACGCCGGTTCCTCCACAGAGCTTTCAAGACGGCGGAGGAAGTAACGGAAAGTTGGGGGTTCCGGTTCCGGTTCCGTCGATGGTGCCTATTCCAGGCTATGGGAATCAAATGGGTATGCAAGGATATTATCAACAGTATAGTAACCATGGCAATGAATCAAACCAATATATGATGCAGCAGAATAAGTTTGGAACAATGGTGACATATCCTTCTGTTGGTGGTGGTGACGTGAATGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009909 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

298

Amino Acids

32.37

Weight (kDa)

4.85

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	144 - 193	2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59570 AT5G59570
fragaria_vesca	FvH4_3g36890
malus_domestica	MD03G1086800.v1.1 MD11G1095900.v1.1
prunus_persica	Prupe.6G071400_v2.0.a1 Prupe.6G071400_v2.0.a1 Prupe.6G071400_v2.0.a1
pyrus_communis	pycom03g06870 pycom11g08120
rosa_chinensis	RchiOBHm_Chr5g0066111
rosa_laevigata	RLG00000035843
rosa_multiflora	Rmu_co8136506.1_g000001 Rmu_sc0002406.1_g000009
rosa_roxburghii	Rroxscaffold_1G00014900
rosa_rugosa	Rorug05G0376400 Rorug05G0376400
rosa_samantha	Rh5AG434900 Rh5BG451200 Rh5CG473500 Rh5DG464800
rosa_wichuraiana	Rw5G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	736
AccB7I	CCANNNNNTGG	1 cut(s)	752
AccII	CGCG	5 cut(s)	155, 210, 212, 401, 427
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	8 cut(s)	57, 60, 350, 353, 371, 425, 443, 687
AclI	AACGTT	1 cut(s)	552
AclWI	GGATC	6 cut(s)	166, 288, 305, 313, 614, 645
AcuI	CTGAAG	1 cut(s)	414
AcyI	GRCGYC	2 cut(s)	51, 201
AfaI	GTAC	2 cut(s)	190, 247
AfiI	CCNNNNNNNGG	3 cut(s)	746, 752, 869
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	4 cut(s)	290, 599, 654, 680
AjiI	CACGTC	1 cut(s)	883
AjnI	CCWGG	2 cut(s)	301, 745
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	5 cut(s)	161, 448, 520, 643, 675
AluI	AGCT	5 cut(s)	161, 448, 520, 643, 675
Alw26I	GTCTC	2 cut(s)	375, 564
AlwI	GGATC	6 cut(s)	166, 288, 305, 313, 614, 645
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	4 cut(s)	347, 445, 517, 829
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	389
AsuC2I	CCSGG	1 cut(s)	388
AsuHPI	GGTGA	5 cut(s)	31, 44, 353, 865, 890
BanI	GGYRCC	1 cut(s)	736
BarI	GAAGNNNNNNTAC	2 cut(s)	238, 270
BauI	CACGAG	1 cut(s)	543
BbsI	GAAGAC	4 cut(s)	54, 402, 416, 512
BbvI	GCAGC	4 cut(s)	359, 457, 529, 841
BccI	CCATC	3 cut(s)	259, 329, 727
BceAI	ACGGC	3 cut(s)	171, 384, 700
BciT130I	CCWGG	2 cut(s)	303, 747
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	375, 564
BfaI	CTAG	2 cut(s)	137, 482
BisI	GCNGC	7 cut(s)	58, 61, 348, 351, 446, 518, 830
BlsI	GCNGC	7 cut(s)	59, 62, 349, 352, 447, 519, 831
Bme1390I	CCNGG	3 cut(s)	303, 388, 747
BmgBI	CACGTC	1 cut(s)	883
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	5 cut(s)	663, 714, 720, 726, 738
BmrFI	CCNGG	3 cut(s)	303, 388, 747
BmsI	GCATC	1 cut(s)	816
BpiI	GAAGAC	4 cut(s)	54, 402, 416, 512
BpuMI	CCSGG	1 cut(s)	388
BsaHI	GRCGYC	2 cut(s)	51, 201
BsaJI	CCNNGG	2 cut(s)	366, 799
BsaWI	WCCGGW	3 cut(s)	79, 715, 721
Bsc4I	CCNNNNNNNGG	3 cut(s)	746, 752, 869
Bse118I	RCCGGY	2 cut(s)	53, 658
Bse3DI	GCAATG	1 cut(s)	811
BseAI	TCCGGA	1 cut(s)	79
BseBI	CCWGG	2 cut(s)	303, 747
BseDI	CCNNGG	2 cut(s)	366, 799
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	3 cut(s)	746, 752, 869
BseMI	GCAATG	1 cut(s)	811
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	4 cut(s)	359, 457, 529, 841
Bsh1236I	CGCG	5 cut(s)	155, 210, 212, 401, 427
Bsh1285I	CGRYCG	1 cut(s)	425
BshFI	GGCC	1 cut(s)	391
BshNI	GGYRCC	1 cut(s)	736
BsiEI	CGRYCG	1 cut(s)	425
BsiSI	CCGG	6 cut(s)	54, 80, 387, 659, 716, 722
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	3 cut(s)	746, 752, 869
BsmAI	GTCTC	2 cut(s)	375, 564
BsmBI	CGTCTC	1 cut(s)	564
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	391
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	6 cut(s)	171, 280, 305, 310, 619, 637
Bsp19I	CCATGG	1 cut(s)	799
BspACI	CCGC	8 cut(s)	57, 60, 350, 353, 371, 425, 443, 687
BspANI	GGCC	1 cut(s)	391
BspEI	TCCGGA	1 cut(s)	79
BspFNI	CGCG	5 cut(s)	155, 210, 212, 401, 427
BspLI	GGNNCC	5 cut(s)	663, 714, 720, 726, 738
BspPI	GGATC	6 cut(s)	166, 288, 305, 313, 614, 645
BspQI	GCTCTTC	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	736
BsrDI	GCAATG	1 cut(s)	811
BsrFI	RCCGGY	2 cut(s)	53, 658
BssAI	RCCGGY	2 cut(s)	53, 658
BssECI	CCNNGG	2 cut(s)	366, 799
BssMI	GATC	6 cut(s)	171, 280, 305, 310, 619, 637
BssNI	GRCGYC	2 cut(s)	51, 201
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	799
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	2 cut(s)	303, 747
Bst4CI	ACNGT	2 cut(s)	32, 789
Bst6I	CTCTTC	3 cut(s)	235, 650, 655
BstACI	GRCGYC	2 cut(s)	51, 201
BstC8I	GCNNGC	1 cut(s)	55
BstDSI	CCRYGG	2 cut(s)	366, 799
BstENI	CCTNNNNNAGG	1 cut(s)	744
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	5 cut(s)	155, 210, 212, 401, 427
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	6 cut(s)	174, 283, 308, 313, 622, 640
BstMAI	GTCTC	2 cut(s)	375, 564
BstMBI	GATC	6 cut(s)	171, 280, 305, 310, 619, 637
BstMCI	CGRYCG	1 cut(s)	425
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	2 cut(s)	303, 747
BstSCI	CCNGG	3 cut(s)	301, 386, 745
BstUI	CGCG	5 cut(s)	155, 210, 212, 401, 427
BstV1I	GCAGC	4 cut(s)	359, 457, 529, 841
BstV2I	GAAGAC	4 cut(s)	54, 402, 416, 512
BstX2I	RGATCY	2 cut(s)	310, 619
BstYI	RGATCY	2 cut(s)	310, 619
BsuRI	GGCC	1 cut(s)	391
BtgI	CCRYGG	2 cut(s)	366, 799
BtgZI	GCGATG	1 cut(s)	78
BtrI	CACGTC	1 cut(s)	883
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	2 cut(s)	53, 658
Cfr13I	GGNCC	1 cut(s)	389
CseI	GACGC	5 cut(s)	59, 201, 390, 407, 546
Csp6I	GTAC	2 cut(s)	189, 246
CviAII	CATG	2 cut(s)	169, 800
CviQI	GTAC	2 cut(s)	189, 246
DpnI	GATC	6 cut(s)	173, 282, 307, 312, 621, 639
DpnII	GATC	6 cut(s)	171, 280, 305, 310, 619, 637
Eam1104I	CTCTTC	3 cut(s)	235, 650, 655
EarI	CTCTTC	3 cut(s)	235, 650, 655
EciI	GGCGGA	2 cut(s)	386, 702
Eco130I	CCWWGG	1 cut(s)	799
Eco57I	CTGAAG	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	744
EcoRII	CCWGG	2 cut(s)	301, 745
EcoT14I	CCWWGG	1 cut(s)	799
ErhI	CCWWGG	1 cut(s)	799
Esp3I	CGTCTC	1 cut(s)	564
FaeI	CATG	2 cut(s)	172, 803
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	2 cut(s)	168, 799
Fnu4HI	GCNGC	7 cut(s)	58, 61, 348, 351, 446, 518, 830
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	7 cut(s)	58, 61, 348, 351, 446, 518, 830
FspBI	CTAG	2 cut(s)	137, 482
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	7 cut(s)	58, 61, 348, 351, 446, 518, 830
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	6 cut(s)	54, 80, 387, 659, 716, 722
HgaI	GACGC	5 cut(s)	59, 201, 390, 407, 546
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	2 cut(s)	51, 201
Hin1II	CATG	2 cut(s)	172, 803
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	9 cut(s)	76, 118, 148, 290, 362, 383, 595, 757, 809
HpaII	CCGG	6 cut(s)	54, 80, 387, 659, 716, 722
HphI	GGTGA	5 cut(s)	31, 44, 353, 865, 890
Hpy166II	GTNNAC	3 cut(s)	98, 438, 466
Hpy188I	TCNGA	4 cut(s)	310, 315, 334, 637
Hpy188III	TCNNGA	4 cut(s)	80, 197, 545, 680
Hpy8I	GTNNAC	3 cut(s)	98, 438, 466
Hpy99I	CGWCG	9 cut(s)	41, 44, 148, 203, 217, 613, 634, 637, 733
HpyAV	CCTTC	3 cut(s)	371, 527, 873
HpyCH4III	ACNGT	2 cut(s)	32, 789
HpyCH4IV	ACGT	5 cut(s)	201, 468, 528, 552, 882
HpyCH4V	TGCA	4 cut(s)	517, 568, 772, 829
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpySE526I	ACGT	5 cut(s)	201, 468, 528, 552, 882
Hsp92I	GRCGYC	2 cut(s)	51, 201
Hsp92II	CATG	2 cut(s)	172, 803
HspAI	GCGC	1 cut(s)	210
Kpn2I	TCCGGA	1 cut(s)	79
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	6 cut(s)	171, 280, 305, 310, 619, 637
LguI	GCTCTTC	1 cut(s)	650
Lsp1109I	GCAGC	4 cut(s)	359, 457, 529, 841
LweI	GCATC	1 cut(s)	816
MaeI	CTAG	2 cut(s)	137, 482
MaeII	ACGT	5 cut(s)	201, 468, 528, 552, 882
MaeIII	GTNAC	5 cut(s)	32, 695, 794, 853, 878
MalI	GATC	6 cut(s)	173, 282, 307, 312, 621, 639
MboI	GATC	6 cut(s)	171, 280, 305, 310, 619, 637
MflI	RGATCY	2 cut(s)	310, 619
MluCI	AATT	2 cut(s)	90, 192
MluI	ACGCGT	1 cut(s)	399
MlyI	GAGTC	2 cut(s)	112, 377
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	6 cut(s)	262, 265, 352, 367, 675, 683
MreI	CGCCGGCG	1 cut(s)	53
MroI	TCCGGA	1 cut(s)	79
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	2 cut(s)	489, 588
MslI	CAYNNNNRTG	1 cut(s)	804
MspA1I	CMGCKG	2 cut(s)	350, 520
MspI	CCGG	6 cut(s)	54, 80, 387, 659, 716, 722
MspR9I	CCNGG	3 cut(s)	303, 388, 747
MvaI	CCWGG	2 cut(s)	303, 747
MvnI	CGCG	5 cut(s)	155, 210, 212, 401, 427
MwoI	GCNNNNNNNGC	1 cut(s)	223
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	388
NcoI	CCATGG	1 cut(s)	799
NdeII	GATC	6 cut(s)	171, 280, 305, 310, 619, 637
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	172, 803
NlaIV	GGNNCC	5 cut(s)	663, 714, 720, 726, 738
NmuCI	GTSAC	3 cut(s)	32, 853, 878
PciSI	GCTCTTC	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 152, 230
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	7 cut(s)	76, 148, 290, 362, 595, 757, 809
PflMI	CCANNNNNTGG	1 cut(s)	752
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	7 cut(s)	59, 62, 349, 352, 447, 519, 831
PleI	GAGTC	2 cut(s)	112, 377
PpsI	GAGTC	2 cut(s)	112, 377
Psp1406I	AACGTT	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	301, 745
PspGI	CCWGG	2 cut(s)	301, 745
PspN4I	GGNNCC	5 cut(s)	663, 714, 720, 726, 738
PspPI	GGNCC	1 cut(s)	389
PsuI	RGATCY	2 cut(s)	310, 619
PvuII	CAGCTG	1 cut(s)	520
RsaI	GTAC	2 cut(s)	190, 247
RsaNI	GTAC	2 cut(s)	189, 246
RseI	CAYNNNNRTG	1 cut(s)	804
SapI	GCTCTTC	1 cut(s)	650
SaqAI	TTAA	2 cut(s)	489, 588
SatI	GCNGC	7 cut(s)	58, 61, 348, 351, 446, 518, 830
Sau3AI	GATC	6 cut(s)	171, 280, 305, 310, 619, 637
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	2 cut(s)	112, 377
ScrFI	CCNGG	3 cut(s)	303, 388, 747
SfaNI	GCATC	1 cut(s)	816
SgrAI	CRCCGGYG	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	804
Sse9I	AATT	2 cut(s)	90, 192
SsiI	CCGC	8 cut(s)	57, 60, 350, 353, 371, 425, 443, 687
SspMI	CTAG	2 cut(s)	137, 482
StyD4I	CCNGG	3 cut(s)	301, 386, 745
StyI	CCWWGG	1 cut(s)	799
TaaI	ACNGT	2 cut(s)	32, 789
TaiI	ACGT	5 cut(s)	204, 471, 531, 555, 885
TaqI	TCGA	5 cut(s)	146, 283, 293, 416, 731
TasI	AATT	2 cut(s)	90, 192
TauI	GCSGC	3 cut(s)	60, 63, 353
TfiI	GAWTC	7 cut(s)	76, 148, 290, 362, 595, 757, 809
Tru1I	TTAA	2 cut(s)	489, 588
Tru9I	TTAA	2 cut(s)	489, 588
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	3 cut(s)	32, 853, 878
TseI	GCWGC	4 cut(s)	347, 445, 517, 829
Tsp45I	GTSAC	3 cut(s)	32, 853, 878
TspDTI	ATGAA	3 cut(s)	81, 539, 822
TspGWI	ACGGA	7 cut(s)	57, 111, 120, 607, 626, 714, 717
TspRI	CASTG	1 cut(s)	504
Van91I	CCANNNNNTGG	1 cut(s)	752
XagI	CCTNNNNNAGG	1 cut(s)	744
XspI	CTAG	2 cut(s)	137, 482
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.