Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8136506.1

Orthogroup ID

OG0009474

Physical Location & Seq

Genomic Coordinates Reverse (-)

16 .. 636

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8136506.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

gagacggagccgtacggcggcggcggcggccgggaaggatccgattcgaggaaatcgaggagggttgatagccccgaggaggcggattcggcgctccggatcgagaattcctcgggcggcggagacgacccgtcgggtcgggcggtcaagaggccgaggctggtgtggaccccgcagctgcacaagcggttcgtggacgtggtggcccacctggggatcaagaacgcggttcccaagacgattatgcagctgatgaacgtggaaggattgacgcgtgagaatgtggccagccacttgcagaagtaccgactctacttgaagaggatgcagggcttgtccaacgagggcccctcctcgtccgacccgcttttcgcctcgactccggtgccgcagagtctgcacgagtcgggtggaagcgggccgggtcacagacaggggcacatgcccatttcgatccccatgccttacccgccgggcgccatgatggctatgcctggttacatggggatgtccggcgggtaccatgggttcgagtcgcatccttcgtataacatgatgcagcagcacaagtatggttccatggtgtcatacccaccacatgttgctcctaatgagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009909 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

206

Amino Acids

22.41

Weight (kDa)

9.1

Isoelectric Point (pI)

63.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59570 AT5G59570
fragaria_vesca	FvH4_3g36890
malus_domestica	MD03G1086800.v1.1 MD11G1095900.v1.1
prunus_persica	Prupe.6G071400_v2.0.a1 Prupe.6G071400_v2.0.a1 Prupe.6G071400_v2.0.a1
pyrus_communis	pycom03g06870 pycom11g08120
rosa_chinensis	RchiOBHm_Chr5g0066111
rosa_laevigata	RLG00000035843
rosa_multiflora	Rmu_co8136506.1_g000001 Rmu_sc0002406.1_g000009
rosa_roxburghii	Rroxscaffold_1G00014900
rosa_rugosa	Rorug05G0376400 Rorug05G0376400
rosa_samantha	Rh5AG434900 Rh5BG451200 Rh5CG473500 Rh5DG464800
rosa_wichuraiana	Rw5G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	519
AccB1I	GGYRCC	3 cut(s)	385, 476, 519
AccII	CGCG	2 cut(s)	227, 274
AccIII	TCCGGA	1 cut(s)	96
AclWI	GGATC	5 cut(s)	33, 46, 107, 224, 448
AcoI	YGGCCR	2 cut(s)	28, 285
AcsI	RAATTY	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	3 cut(s)	14, 305, 521
AfiI	CCNNNNNNNGG	4 cut(s)	17, 48, 79, 213
AflIII	ACRYGT	2 cut(s)	272, 598
AgsI	TTSAA	1 cut(s)	319
AhdI	GACNNNNNGTC	1 cut(s)	130
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	210, 493
AluBI	AGCT	2 cut(s)	178, 250
AluI	AGCT	2 cut(s)	178, 250
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	5 cut(s)	33, 46, 107, 224, 448
AlwNI	CAGNNNCTG	1 cut(s)	397
Ama87I	CYCGRG	2 cut(s)	74, 112
Aor13HI	TCCGGA	1 cut(s)	96
AoxI	GGCC	6 cut(s)	28, 152, 204, 285, 346, 419
ApaI	GGGCCC	1 cut(s)	350
ApeKI	GCWGC	5 cut(s)	175, 178, 247, 559, 562
ApoI	RAATTY	1 cut(s)	106
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
Asp718I	GGTACC	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	94, 479
AspS9I	GGNCC	5 cut(s)	168, 205, 346, 347, 419
AsuC2I	CCSGG	3 cut(s)	32, 423, 474
AvaI	CYCGRG	2 cut(s)	74, 112
AvaII	GGWCC	1 cut(s)	168
BaeGI	GKGCMC	2 cut(s)	350, 441
BalI	TGGCCA	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	38
BanI	GGYRCC	3 cut(s)	385, 476, 519
BanII	GRGCYC	1 cut(s)	350
BauI	CACGAG	1 cut(s)	401
BbvI	GCAGC	5 cut(s)	165, 187, 259, 571, 574
BccI	CCATC	1 cut(s)	478
BceAI	ACGGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	4 cut(s)	367, 401, 442, 476
BciT130I	CCWGG	2 cut(s)	212, 495
BcnI	CCSGG	3 cut(s)	32, 423, 474
BcoDI	GTCTC	1 cut(s)	117
BfoI	RGCGCY	2 cut(s)	95, 480
BglI	GCCNNNNNGGC	1 cut(s)	485
Bme1390I	CCNGG	5 cut(s)	32, 212, 423, 474, 495
Bme18I	GGWCC	1 cut(s)	168
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmeT110I	CYCGRG	2 cut(s)	74, 112
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	5 cut(s)	168, 205, 346, 347, 419
BmrFI	CCNGG	5 cut(s)	32, 212, 423, 474, 495
BmsI	GCATC	3 cut(s)	315, 546, 547
BplI	GAGNNNNNCTC	4 cut(s)	95, 127, 335, 367
BpuMI	CCSGG	3 cut(s)	32, 423, 474
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	6 cut(s)	75, 111, 155, 211, 523, 579
BsaWI	WCCGGW	2 cut(s)	96, 382
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 48, 79, 213
BseAI	TCCGGA	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	212, 495
BseDI	CCNNGG	6 cut(s)	75, 111, 155, 211, 523, 579
BseGI	GGATG	3 cut(s)	330, 513, 538
BseLI	CCNNNNNNNGG	4 cut(s)	17, 48, 79, 213
BseRI	GAGGAG	3 cut(s)	73, 92, 343
BseSI	GKGCMC	2 cut(s)	350, 441
BseX3I	CGGCCG	1 cut(s)	28
BseXI	GCAGC	5 cut(s)	165, 187, 259, 571, 574
BsgI	GTGCAG	2 cut(s)	164, 383
Bsh1236I	CGCG	2 cut(s)	227, 274
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	6 cut(s)	30, 154, 206, 287, 348, 421
BshNI	GGYRCC	3 cut(s)	385, 476, 519
BsiEI	CGRYCG	1 cut(s)	31
BsiHKCI	CYCGRG	2 cut(s)	74, 112
BsiSI	CCGG	6 cut(s)	31, 97, 383, 422, 473, 513
BsiWI	CGTACG	1 cut(s)	12
BslI	CCNNNNNNNGG	4 cut(s)	17, 48, 79, 213
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	6 cut(s)	30, 154, 206, 287, 348, 421
BsoBI	CYCGRG	2 cut(s)	74, 112
Bsp120I	GGGCCC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	350, 441
Bsp13I	TCCGGA	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	38, 99, 216, 453
Bsp19I	CCATGG	2 cut(s)	523, 579
BspANI	GGCC	6 cut(s)	30, 154, 206, 287, 348, 421
BspEI	TCCGGA	1 cut(s)	96
BspFNI	CGCG	2 cut(s)	227, 274
BspPI	GGATC	5 cut(s)	33, 46, 107, 224, 448
BspT107I	GGYRCC	3 cut(s)	385, 476, 519
BssECI	CCNNGG	6 cut(s)	75, 111, 155, 211, 523, 579
BssMI	GATC	4 cut(s)	38, 99, 216, 453
BssNI	GRCGYC	1 cut(s)	477
BssSI	CACGAG	1 cut(s)	401
BssT1I	CCWWGG	2 cut(s)	523, 579
Bst2BI	CACGAG	1 cut(s)	401
Bst2UI	CCWGG	2 cut(s)	212, 495
Bst6I	CTCTTC	1 cut(s)	314
BstACI	GRCGYC	1 cut(s)	477
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstC8I	GCNNGC	2 cut(s)	289, 419
BstDSI	CCRYGG	2 cut(s)	523, 579
BstF5I	GGATG	3 cut(s)	330, 513, 538
BstFNI	CGCG	2 cut(s)	227, 274
BstH2I	RGCGCY	2 cut(s)	95, 480
BstHHI	GCGC	2 cut(s)	94, 479
BstKTI	GATC	4 cut(s)	41, 102, 219, 456
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	4 cut(s)	38, 99, 216, 453
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 27, 89, 184, 397, 469, 485
BstNI	CCWGG	2 cut(s)	212, 495
BstNSI	RCATGY	2 cut(s)	445, 602
BstSCI	CCNGG	5 cut(s)	30, 210, 421, 472, 493
BstSLI	GKGCMC	2 cut(s)	350, 441
BstUI	CGCG	2 cut(s)	227, 274
BstV1I	GCAGC	5 cut(s)	165, 187, 259, 571, 574
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BstZI	CGGCCG	1 cut(s)	28
BsuRI	GGCC	6 cut(s)	30, 154, 206, 287, 348, 421
BtgI	CCRYGG	2 cut(s)	523, 579
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	330, 513, 538
Cac8I	GCNNGC	2 cut(s)	289, 419
CaiI	CAGNNNCTG	1 cut(s)	397
CfoI	GCGC	2 cut(s)	94, 479
Cfr13I	GGNCC	5 cut(s)	168, 205, 346, 347, 419
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	3 cut(s)	13, 304, 520
CviAII	CATG	8 cut(s)	442, 460, 481, 502, 524, 553, 580, 599
CviQI	GTAC	3 cut(s)	13, 304, 520
DinI	GGCGCC	1 cut(s)	478
DpnI	GATC	4 cut(s)	40, 101, 218, 455
DpnII	GATC	4 cut(s)	38, 99, 216, 453
DriI	GACNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	2 cut(s)	28, 285
EagI	CGGCCG	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	314
Eam1105I	GACNNNNNGTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	314
EciI	GGCGGA	2 cut(s)	98, 135
EclXI	CGGCCG	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	523, 579
Eco24I	GRGCYC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	168
Eco52I	CGGCCG	1 cut(s)	28
Eco88I	CYCGRG	2 cut(s)	74, 112
EcoO109I	RGGNCCY	2 cut(s)	346, 347
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	210, 493
EcoT14I	CCWWGG	2 cut(s)	523, 579
EcoT38I	GRGCYC	1 cut(s)	350
EgeI	GGCGCC	1 cut(s)	478
EheI	GGCGCC	1 cut(s)	478
ErhI	CCWWGG	2 cut(s)	523, 579
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	8 cut(s)	445, 463, 484, 505, 527, 556, 583, 602
FatI	CATG	8 cut(s)	441, 459, 480, 501, 523, 552, 579, 598
FauI	CCCGC	5 cut(s)	180, 372, 410, 477, 509
FokI	GGATG	3 cut(s)	337, 520, 525
FriOI	GRGCYC	1 cut(s)	350
GlaI	GCGC	2 cut(s)	93, 478
HaeII	RGCGCY	2 cut(s)	95, 480
HaeIII	GGCC	6 cut(s)	30, 154, 206, 287, 348, 421
HapII	CCGG	6 cut(s)	31, 97, 383, 422, 473, 513
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	2 cut(s)	94, 479
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	8 cut(s)	445, 463, 484, 505, 527, 556, 583, 602
Hin6I	GCGC	2 cut(s)	92, 477
HinP1I	GCGC	2 cut(s)	92, 477
HinfI	GANTC	7 cut(s)	44, 86, 309, 379, 394, 404, 533
HpaII	CCGG	6 cut(s)	31, 97, 383, 422, 473, 513
Hpy166II	GTNNAC	2 cut(s)	168, 196
Hpy188I	TCNGA	2 cut(s)	43, 361
Hpy188III	TCNNGA	4 cut(s)	97, 103, 148, 220
Hpy8I	GTNNAC	2 cut(s)	168, 196
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	29, 257, 552
HpyCH4IV	ACGT	2 cut(s)	198, 258
HpyCH4V	TGCA	6 cut(s)	181, 247, 298, 328, 400, 559
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 27, 89, 184, 397, 469, 485
HpySE526I	ACGT	2 cut(s)	198, 258
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	8 cut(s)	445, 463, 484, 505, 527, 556, 583, 602
HspAI	GCGC	2 cut(s)	92, 477
KasI	GGCGCC	1 cut(s)	476
Kpn2I	TCCGGA	1 cut(s)	96
KpnI	GGTACC	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	38, 99, 216, 453
LmnI	GCTCC	3 cut(s)	7, 99, 610
Lsp1109I	GCAGC	5 cut(s)	165, 187, 259, 571, 574
LweI	GCATC	3 cut(s)	315, 546, 547
MaeII	ACGT	2 cut(s)	198, 258
MaeIII	GTNAC	2 cut(s)	425, 497
MalI	GATC	4 cut(s)	40, 101, 218, 455
MboI	GATC	4 cut(s)	38, 99, 216, 453
MboII	GAAGA	1 cut(s)	331
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	2 cut(s)	350, 441
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	106
MluI	ACGCGT	1 cut(s)	272
MluNI	TGGCCA	1 cut(s)	287
Mly113I	GGCGCC	1 cut(s)	477
MlyI	GAGTC	5 cut(s)	303, 373, 403, 413, 542
MmeI	TCCRAC	2 cut(s)	363, 384
Mox20I	TGGCCA	1 cut(s)	287
MroI	TCCGGA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	287
MslI	CAYNNNNRTG	2 cut(s)	506, 570
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	2 cut(s)	178, 250
MspI	CCGG	6 cut(s)	31, 97, 383, 422, 473, 513
MspR9I	CCNGG	5 cut(s)	32, 212, 423, 474, 495
MvaI	CCWGG	2 cut(s)	212, 495
MvnI	CGCG	2 cut(s)	227, 274
MwoI	GCNNNNNNNGC	7 cut(s)	24, 27, 89, 184, 397, 469, 485
NarI	GGCGCC	1 cut(s)	477
NciI	CCSGG	3 cut(s)	32, 423, 474
NcoI	CCATGG	2 cut(s)	523, 579
NdeII	GATC	4 cut(s)	38, 99, 216, 453
NlaIII	CATG	8 cut(s)	445, 463, 484, 505, 527, 556, 583, 602
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	425
NspI	RCATGY	2 cut(s)	445, 602
PciI	ACATGT	1 cut(s)	598
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 542
PfeI	GAWTC	2 cut(s)	44, 86
Pfl23II	CGTACG	1 cut(s)	12
PleI	GAGTC	5 cut(s)	303, 373, 402, 412, 541
PluTI	GGCGCC	1 cut(s)	480
PpsI	GAGTC	5 cut(s)	303, 373, 402, 412, 541
PscI	ACATGT	1 cut(s)	598
Psp6I	CCWGG	2 cut(s)	210, 493
PspGI	CCWGG	2 cut(s)	210, 493
PspLI	CGTACG	1 cut(s)	12
PspOMI	GGGCCC	1 cut(s)	346
PspPI	GGNCC	5 cut(s)	168, 205, 346, 347, 419
PsrI	GAACNNNNNNTAC	2 cut(s)	512, 544
PstNI	CAGNNNCTG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	38
PvuII	CAGCTG	2 cut(s)	178, 250
RsaI	GTAC	3 cut(s)	14, 305, 521
RsaNI	GTAC	3 cut(s)	13, 304, 520
RseI	CAYNNNNRTG	2 cut(s)	506, 570
Sau3AI	GATC	4 cut(s)	38, 99, 216, 453
Sau96I	GGNCC	5 cut(s)	168, 205, 346, 347, 419
SchI	GAGTC	5 cut(s)	303, 373, 403, 413, 542
ScrFI	CCNGG	5 cut(s)	32, 212, 423, 474, 495
SduI	GDGCHC	2 cut(s)	350, 441
SetI	ASST	5 cut(s)	180, 201, 213, 252, 261
SfaNI	GCATC	3 cut(s)	315, 546, 547
SfoI	GGCGCC	1 cut(s)	478
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	2 cut(s)	506, 570
Sse9I	AATT	1 cut(s)	106
SspDI	GGCGCC	1 cut(s)	476
StyD4I	CCNGG	5 cut(s)	30, 210, 421, 472, 493
StyI	CCWWGG	2 cut(s)	523, 579
TaiI	ACGT	2 cut(s)	201, 261
TaqI	TCGA	6 cut(s)	47, 56, 102, 377, 452, 531
TasI	AATT	1 cut(s)	106
TauI	GCSGC	6 cut(s)	21, 24, 27, 30, 120, 391
TfiI	GAWTC	2 cut(s)	44, 86
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	5 cut(s)	175, 178, 247, 559, 562
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	1 cut(s)	269
TspGWI	ACGGA	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	2 cut(s)	445, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.