RchiOBHm_Chr5g0066111
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
72184371 .. 72188213
3843 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34190

Sequence Viewer

Length: 948 bp
ATGGGAGAGGAGGTGAGGATGAGCGAGTACGAAGGAGGCGGCAGCGGCGGCGACGGCGACGAGGAGAGGGTTTCGGAGTGGGAGGCCGGGCTTCCGATCGCCGATGATCTGACGCCGCTGTCTCAGCCGTTGATTCCGATGGAGCTGGCGTCGGCGTTCAGTATCTCGCCGGAGCCGTGCCGCACGGTGGTGGACGTCAACCGCGCGTCGCAGAAGACGGTGTCGACGCTGCGTGGGGGGGCTCACTCGCAGGCGTATTCGTCGAACTACAAGTCGTTCGAGGAGAACAACAACCGCAGCGACGAGCCGATGGTGGTGGAGCTGGACGAGACGGAGCCGTACGGAGGAGGCGGCGGCGGGGAAGGATCCGATTCGAGGAAATCGAGGAGGGTTGATAGCCCCGAGGAGGCGGATTCGGCGCTCCGGATCGAGAATTCCTCGGGCGGCGGAGAAGACCCGTCGGGTCGGGCGGTCAAGCGGCCTCGGCTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTGGACGTGGTGGCCCACCTGGGGATCAAGAACGCGGTTCCCAAGACGATTATGCAGCTGATGAACGTGGAGGGATTGACGCGTGAGAATGTGGCCAGCCACTTGCAGAAGTACCGACTCTACTTGAAGAGGATGCAGGGCTTGTCCAACGAGGGCCCCTCCTCGTCCGACCAGCTTTTCGCCTCGACTCCGGTGCCGCAGAGTCTGCACGAGTCGGGTGGAAGCGGGCCGGGTCACAGACAGGGGCACATGCCCGTTTCGATCCCCATGCCTTACCCGCCGGGCGCCATGATGGCTATGCCTAGTTACATGGGGATGTCCGGCGGGTACCATGGGTTCGAGTCGCATCCTTCGTATAACATGATGCAGCAGCAGAAGTATGGTTCCATGGTGTCATACCCACCCCATGTTGCTCCTAATGAGAAATGA

Protein Analysis

315

Amino Acids

34.15

Weight (kDa)

5.42

Isoelectric Point (pI)

59.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 163 - 212 2.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 118
AatII GACGTC 1 cut(s) 198
Acc65I GGTACC 1 cut(s) 846
AccB1I GGYRCC 3 cut(s) 712, 803, 846
AccI GTMKAC 1 cut(s) 224
AccII CGCG 4 cut(s) 204, 206, 554, 601
AccIII TCCGGA 1 cut(s) 423
AclWI GGATC 5 cut(s) 360, 373, 434, 551, 775
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 1 cut(s) 433
AcyI GRCGYC 4 cut(s) 113, 149, 195, 804
AfaI GTAC 4 cut(s) 29, 341, 632, 848
AfiI CCNNNNNNNGG 5 cut(s) 187, 344, 375, 406, 540
AflIII ACRYGT 1 cut(s) 599
AgsI TTSAA 1 cut(s) 646
AjiI CACGTC 1 cut(s) 526
AjnI CCWGG 1 cut(s) 537
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 5 cut(s) 145, 322, 505, 577, 694
AluI AGCT 5 cut(s) 145, 322, 505, 577, 694
Alw26I GTCTC 2 cut(s) 126, 323
AlwI GGATC 5 cut(s) 360, 373, 434, 551, 775
AlwNI CAGNNNCTG 1 cut(s) 724
Ama87I CYCGRG 2 cut(s) 401, 439
Aor13HI TCCGGA 1 cut(s) 423
AoxI GGCC 6 cut(s) 84, 479, 531, 612, 673, 746
ApaI GGGCCC 1 cut(s) 677
ApeKI GCWGC 8 cut(s) 42, 229, 297, 502, 505, 574, 886, 889
ApoI RAATTY 1 cut(s) 433
ArsI GACNNNNNNTTYG 4 cut(s) 257, 289, 680, 712
Asp718I GGTACC 1 cut(s) 846
AspLEI GCGC 3 cut(s) 206, 421, 806
AspS9I GGNCC 5 cut(s) 495, 532, 673, 674, 746
AsuC2I CCSGG 3 cut(s) 88, 750, 801
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 2 cut(s) 401, 439
AvaII GGWCC 1 cut(s) 495
BaeGI GKGCMC 2 cut(s) 677, 768
BalI TGGCCA 1 cut(s) 614
BamHI GGATCC 1 cut(s) 365
BanI GGYRCC 3 cut(s) 712, 803, 846
BanII GRGCYC 2 cut(s) 244, 677
BauI CACGAG 1 cut(s) 728
BbsI GAAGAC 2 cut(s) 221, 459
BbvI GCAGC 8 cut(s) 54, 216, 309, 492, 514, 586, 898, 901
BccI CCATC 3 cut(s) 133, 304, 805
BceAI ACGGC 4 cut(s) 70, 112, 160, 322
BcgI CGANNNNNNTGC 4 cut(s) 694, 728, 769, 803
BciT130I CCWGG 1 cut(s) 539
BcnI CCSGG 3 cut(s) 88, 750, 801
BcoDI GTCTC 2 cut(s) 126, 323
BfaI CTAG 1 cut(s) 822
BfoI RGCGCY 2 cut(s) 422, 807
BglI GCCNNNNNGGC 1 cut(s) 812
Bme1390I CCNGG 4 cut(s) 88, 539, 750, 801
Bme18I GGWCC 1 cut(s) 495
BmeT110I CYCGRG 2 cut(s) 401, 439
BmgBI CACGTC 1 cut(s) 526
BmgT120I GGNCC 5 cut(s) 495, 532, 673, 674, 746
BmrFI CCNGG 4 cut(s) 88, 539, 750, 801
BmsI GCATC 3 cut(s) 642, 873, 874
BpiI GAAGAC 2 cut(s) 221, 459
BplI GAGNNNNNCTC 4 cut(s) 422, 454, 662, 694
BpuMI CCSGG 3 cut(s) 88, 750, 801
BsaHI GRCGYC 4 cut(s) 113, 149, 195, 804
BsaJI CCNNGG 6 cut(s) 402, 438, 482, 538, 850, 906
BsaWI WCCGGW 2 cut(s) 423, 709
BsaXI ACNNNNNCTCC 3 cut(s) 27, 134, 164
Bsc4I CCNNNNNNNGG 5 cut(s) 187, 344, 375, 406, 540
BseAI TCCGGA 1 cut(s) 423
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 6 cut(s) 402, 438, 482, 538, 850, 906
BseGI GGATG 4 cut(s) 24, 657, 840, 865
BseLI CCNNNNNNNGG 5 cut(s) 187, 344, 375, 406, 540
BseMII CTCAG 1 cut(s) 137
BseRI GAGGAG 7 cut(s) 23, 77, 296, 360, 400, 419, 670
BseSI GKGCMC 2 cut(s) 677, 768
BseXI GCAGC 8 cut(s) 54, 216, 309, 492, 514, 586, 898, 901
BsgI GTGCAG 2 cut(s) 491, 710
Bsh1236I CGCG 4 cut(s) 204, 206, 554, 601
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 6 cut(s) 86, 481, 533, 614, 675, 748
BshNI GGYRCC 3 cut(s) 712, 803, 846
BsiEI CGRYCG 1 cut(s) 99
BsiHKCI CYCGRG 2 cut(s) 401, 439
BsiSI CCGG 7 cut(s) 87, 170, 424, 710, 749, 800, 840
BsiWI CGTACG 1 cut(s) 339
BslI CCNNNNNNNGG 5 cut(s) 187, 344, 375, 406, 540
BsmAI GTCTC 2 cut(s) 126, 323
BsmBI CGTCTC 1 cut(s) 323
BsnI GGCC 6 cut(s) 86, 481, 533, 614, 675, 748
BsoBI CYCGRG 2 cut(s) 401, 439
Bsp120I GGGCCC 1 cut(s) 673
Bsp1286I GDGCHC 3 cut(s) 244, 677, 768
Bsp13I TCCGGA 1 cut(s) 423
Bsp143I GATC 6 cut(s) 96, 106, 365, 426, 543, 780
Bsp19I CCATGG 2 cut(s) 850, 906
BspANI GGCC 6 cut(s) 86, 481, 533, 614, 675, 748
BspCNI CTCAG 1 cut(s) 136
BspEI TCCGGA 1 cut(s) 423
BspFNI CGCG 4 cut(s) 204, 206, 554, 601
BspPI GGATC 5 cut(s) 360, 373, 434, 551, 775
BspT107I GGYRCC 3 cut(s) 712, 803, 846
BssECI CCNNGG 6 cut(s) 402, 438, 482, 538, 850, 906
BssMI GATC 6 cut(s) 96, 106, 365, 426, 543, 780
BssNI GRCGYC 4 cut(s) 113, 149, 195, 804
BssSI CACGAG 1 cut(s) 728
BssT1I CCWWGG 2 cut(s) 850, 906
Bst2BI CACGAG 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 187, 220
Bst6I CTCTTC 1 cut(s) 641
BstACI GRCGYC 4 cut(s) 113, 149, 195, 804
BstAPI GCANNNNNTGC 1 cut(s) 724
BstC8I GCNNGC 4 cut(s) 147, 252, 616, 746
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 2 cut(s) 850, 906
BstF5I GGATG 4 cut(s) 24, 657, 840, 865
BstFNI CGCG 4 cut(s) 204, 206, 554, 601
BstH2I RGCGCY 2 cut(s) 422, 807
BstHHI GCGC 3 cut(s) 206, 421, 806
BstKTI GATC 6 cut(s) 99, 109, 368, 429, 546, 783
BstMAI GTCTC 2 cut(s) 126, 323
BstMBI GATC 6 cut(s) 96, 106, 365, 426, 543, 780
BstMCI CGRYCG 1 cut(s) 99
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 4 cut(s) 86, 537, 748, 799
BstSLI GKGCMC 2 cut(s) 677, 768
BstUI CGCG 4 cut(s) 204, 206, 554, 601
BstV1I GCAGC 8 cut(s) 54, 216, 309, 492, 514, 586, 898, 901
BstV2I GAAGAC 2 cut(s) 221, 459
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuRI GGCC 6 cut(s) 86, 481, 533, 614, 675, 748
BtgI CCRYGG 2 cut(s) 850, 906
BtrI CACGTC 1 cut(s) 526
BtsCI GGATG 4 cut(s) 24, 657, 840, 865
Cac8I GCNNGC 4 cut(s) 147, 252, 616, 746
CaiI CAGNNNCTG 1 cut(s) 724
CfoI GCGC 3 cut(s) 206, 421, 806
Cfr13I GGNCC 5 cut(s) 495, 532, 673, 674, 746
CseI GACGC 5 cut(s) 121, 138, 195, 235, 607
Csp6I GTAC 4 cut(s) 28, 340, 631, 847
CviAII CATG 8 cut(s) 769, 787, 808, 829, 851, 880, 907, 926
CviQI GTAC 4 cut(s) 28, 340, 631, 847
DdeI CTNAG 1 cut(s) 123
DinI GGCGCC 1 cut(s) 805
DpnI GATC 6 cut(s) 98, 108, 367, 428, 545, 782
DpnII GATC 6 cut(s) 96, 106, 365, 426, 543, 780
DrdI GACNNNNNNGTC 1 cut(s) 118
DseDI GACNNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
EciI GGCGGA 2 cut(s) 425, 462
Eco130I CCWWGG 2 cut(s) 850, 906
Eco24I GRGCYC 2 cut(s) 244, 677
Eco47I GGWCC 1 cut(s) 495
Eco88I CYCGRG 2 cut(s) 401, 439
EcoO109I RGGNCCY 2 cut(s) 673, 674
EcoRI GAATTC 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 2 cut(s) 850, 906
EcoT38I GRGCYC 2 cut(s) 244, 677
EgeI GGCGCC 1 cut(s) 805
EheI GGCGCC 1 cut(s) 805
ErhI CCWWGG 2 cut(s) 850, 906
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 8 cut(s) 772, 790, 811, 832, 854, 883, 910, 929
FatI CATG 8 cut(s) 768, 786, 807, 828, 850, 879, 906, 925
FauI CCCGC 5 cut(s) 350, 507, 737, 804, 836
FblI GTMKAC 1 cut(s) 224
FokI GGATG 4 cut(s) 31, 664, 847, 852
FriOI GRGCYC 2 cut(s) 244, 677
FspBI CTAG 1 cut(s) 822
GlaI GCGC 3 cut(s) 205, 420, 805
HaeII RGCGCY 2 cut(s) 422, 807
HaeIII GGCC 6 cut(s) 86, 481, 533, 614, 675, 748
HapII CCGG 7 cut(s) 87, 170, 424, 710, 749, 800, 840
HgaI GACGC 5 cut(s) 121, 138, 195, 235, 607
HhaI GCGC 3 cut(s) 206, 421, 806
Hin1I GRCGYC 4 cut(s) 113, 149, 195, 804
Hin1II CATG 8 cut(s) 772, 790, 811, 832, 854, 883, 910, 929
Hin6I GCGC 3 cut(s) 204, 419, 804
HinP1I GCGC 3 cut(s) 204, 419, 804
HincII GTYRAC 2 cut(s) 199, 225
HindII GTYRAC 2 cut(s) 199, 225
HinfI GANTC 8 cut(s) 133, 371, 413, 636, 706, 721, 731, 860
HpaII CCGG 7 cut(s) 87, 170, 424, 710, 749, 800, 840
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 5 cut(s) 193, 199, 225, 495, 523
Hpy188I TCNGA 6 cut(s) 76, 96, 111, 138, 370, 688
Hpy188III TCNNGA 3 cut(s) 424, 430, 547
Hpy8I GTNNAC 5 cut(s) 193, 199, 225, 495, 523
Hpy99I CGWCG 8 cut(s) 56, 62, 154, 211, 229, 265, 305, 463
HpyAV CCTTC 3 cut(s) 26, 356, 879
HpyCH4III ACNGT 2 cut(s) 187, 220
HpyCH4IV ACGT 3 cut(s) 195, 525, 585
HpyCH4V TGCA 6 cut(s) 508, 574, 625, 655, 727, 886
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 3 cut(s) 195, 525, 585
Hsp92I GRCGYC 4 cut(s) 113, 149, 195, 804
Hsp92II CATG 8 cut(s) 772, 790, 811, 832, 854, 883, 910, 929
HspAI GCGC 3 cut(s) 204, 419, 804
KasI GGCGCC 1 cut(s) 803
Kpn2I TCCGGA 1 cut(s) 423
KpnI GGTACC 1 cut(s) 850
Kzo9I GATC 6 cut(s) 96, 106, 365, 426, 543, 780
LmnI GCTCC 6 cut(s) 142, 172, 319, 334, 426, 937
Lsp1109I GCAGC 8 cut(s) 54, 216, 309, 492, 514, 586, 898, 901
LweI GCATC 3 cut(s) 642, 873, 874
MaeI CTAG 1 cut(s) 822
MaeII ACGT 3 cut(s) 195, 525, 585
MaeIII GTNAC 2 cut(s) 752, 824
MalI GATC 6 cut(s) 98, 108, 367, 428, 545, 782
MboI GATC 6 cut(s) 96, 106, 365, 426, 543, 780
MboII GAAGA 3 cut(s) 226, 464, 658
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 3 cut(s) 244, 677, 768
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 1 cut(s) 433
MluI ACGCGT 1 cut(s) 599
MluNI TGGCCA 1 cut(s) 614
Mly113I GGCGCC 1 cut(s) 804
MlyI GAGTC 5 cut(s) 630, 700, 730, 740, 869
MmeI TCCRAC 2 cut(s) 690, 711
Mox20I TGGCCA 1 cut(s) 614
MroI TCCGGA 1 cut(s) 423
MscI TGGCCA 1 cut(s) 614
MslI CAYNNNNRTG 2 cut(s) 188, 833
Msp20I TGGCCA 1 cut(s) 614
MspA1I CMGCKG 4 cut(s) 45, 118, 505, 577
MspI CCGG 7 cut(s) 87, 170, 424, 710, 749, 800, 840
MspR9I CCNGG 4 cut(s) 88, 539, 750, 801
MvaI CCWGG 1 cut(s) 539
MvnI CGCG 4 cut(s) 204, 206, 554, 601
NarI GGCGCC 1 cut(s) 804
NciI CCSGG 3 cut(s) 88, 750, 801
NcoI CCATGG 2 cut(s) 850, 906
NdeII GATC 6 cut(s) 96, 106, 365, 426, 543, 780
NlaIII CATG 8 cut(s) 772, 790, 811, 832, 854, 883, 910, 929
NmeAIII GCCGAG 1 cut(s) 463
NmuCI GTSAC 1 cut(s) 752
NspI RCATGY 1 cut(s) 772
OliI CACNNNNGTG 1 cut(s) 188
PcsI WCGNNNNNNNCGW 3 cut(s) 173, 380, 869
PfeI GAWTC 3 cut(s) 133, 371, 413
Pfl23II CGTACG 1 cut(s) 339
PflFI GACNNNGTC 1 cut(s) 220
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 5 cut(s) 630, 700, 729, 739, 868
PluTI GGCGCC 1 cut(s) 807
PpsI GAGTC 5 cut(s) 630, 700, 729, 739, 868
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspLI CGTACG 1 cut(s) 339
PspOMI GGGCCC 1 cut(s) 673
PspPI GGNCC 5 cut(s) 495, 532, 673, 674, 746
PsrI GAACNNNNNNTAC 2 cut(s) 839, 871
PstNI CAGNNNCTG 1 cut(s) 724
PsuI RGATCY 1 cut(s) 365
PsyI GACNNNGTC 1 cut(s) 220
PvuI CGATCG 1 cut(s) 99
PvuII CAGCTG 2 cut(s) 505, 577
RsaI GTAC 4 cut(s) 29, 341, 632, 848
RsaNI GTAC 4 cut(s) 28, 340, 631, 847
RseI CAYNNNNRTG 2 cut(s) 188, 833
SalI GTCGAC 1 cut(s) 223
Sau3AI GATC 6 cut(s) 96, 106, 365, 426, 543, 780
Sau96I GGNCC 5 cut(s) 495, 532, 673, 674, 746
SchI GAGTC 5 cut(s) 630, 700, 730, 740, 869
ScrFI CCNGG 4 cut(s) 88, 539, 750, 801
SduI GDGCHC 3 cut(s) 244, 677, 768
SfaNI GCATC 3 cut(s) 642, 873, 874
SfoI GGCGCC 1 cut(s) 805
SinI GGWCC 1 cut(s) 495
SmiMI CAYNNNNRTG 2 cut(s) 188, 833
Sse9I AATT 1 cut(s) 433
SspDI GGCGCC 1 cut(s) 803
SspMI CTAG 1 cut(s) 822
StyD4I CCNGG 4 cut(s) 86, 537, 748, 799
StyI CCWWGG 2 cut(s) 850, 906
TaaI ACNGT 2 cut(s) 187, 220
TaiI ACGT 3 cut(s) 198, 528, 588
TaqI TCGA 9 cut(s) 224, 263, 279, 374, 383, 429, 704, 779, 858
TasI AATT 1 cut(s) 433
TfiI GAWTC 3 cut(s) 133, 371, 413
TseFI GTSAC 1 cut(s) 752
TseI GCWGC 8 cut(s) 42, 229, 297, 502, 505, 574, 886, 889
Tsp45I GTSAC 1 cut(s) 752
TspDTI ATGAA 1 cut(s) 596
TspGWI ACGGA 2 cut(s) 347, 357
Tth111I GACNNNGTC 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 495
XapI RAATTY 1 cut(s) 433
XceI RCATGY 1 cut(s) 772
XmiI GTMKAC 1 cut(s) 224
XspI CTAG 1 cut(s) 822
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.