transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G59570 AT5G59570 |
| fragaria_vesca | FvH4_3g36890 |
| malus_domestica | MD03G1086800.v1.1 MD11G1095900.v1.1 |
| prunus_persica | Prupe.6G071400_v2.0.a1 Prupe.6G071400_v2.0.a1 Prupe.6G071400_v2.0.a1 |
| pyrus_communis | pycom03g06870 pycom11g08120 |
| rosa_chinensis | RchiOBHm_Chr5g0066111 |
| rosa_laevigata | RLG00000035843 |
| rosa_multiflora | Rmu_co8136506.1_g000001 Rmu_sc0002406.1_g000009 |
| rosa_roxburghii | Rroxscaffold_1G00014900 |
| rosa_rugosa | Rorug05G0376400 Rorug05G0376400 |
| rosa_samantha | Rh5AG434900 Rh5BG451200 Rh5CG473500 Rh5DG464800 |
| rosa_wichuraiana | Rw5G040730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 204, 309 |
| Acc65I | GGTACC | 1 cut(s) | 876 |
| AccB1I | GGYRCC | 4 cut(s) | 242, 544, 703, 876 |
| AccBSI | CCGCTC | 1 cut(s) | 248 |
| AccI | GTMKAC | 3 cut(s) | 198, 330, 695 |
| AccII | CGCG | 7 cut(s) | 210, 212, 240, 379, 454, 542, 692 |
| AclI | AACGTT | 1 cut(s) | 573 |
| AclWI | GGATC | 4 cut(s) | 133, 354, 367, 539 |
| AcoI | YGGCCR | 2 cut(s) | 435, 467 |
| AcsI | RAATTY | 1 cut(s) | 427 |
| AcuI | CTGAAG | 2 cut(s) | 148, 482 |
| AcyI | GRCGYC | 4 cut(s) | 201, 243, 306, 698 |
| AdeI | CACNNNGTG | 1 cut(s) | 935 |
| AfaI | GTAC | 5 cut(s) | 29, 190, 347, 394, 878 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 528, 830, 872 |
| AflIII | ACRYGT | 1 cut(s) | 444 |
| AgeI | ACCGGT | 1 cut(s) | 342 |
| AgsI | TTSAA | 3 cut(s) | 369, 578, 634 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 445 |
| AjiI | CACGTC | 2 cut(s) | 447, 514 |
| AjnI | CCWGG | 1 cut(s) | 525 |
| AluBI | AGCT | 5 cut(s) | 151, 493, 565, 685, 714 |
| AluI | AGCT | 5 cut(s) | 151, 493, 565, 685, 714 |
| Alw21I | GWGCWC | 2 cut(s) | 153, 940 |
| Alw26I | GTCTC | 2 cut(s) | 62, 232 |
| AlwI | GGATC | 4 cut(s) | 133, 354, 367, 539 |
| Ama87I | CYCGRG | 4 cut(s) | 72, 80, 588, 830 |
| AoxI | GGCC | 5 cut(s) | 402, 435, 467, 519, 665 |
| ApeKI | GCWGC | 5 cut(s) | 97, 297, 490, 493, 562 |
| ApoI | RAATTY | 1 cut(s) | 427 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 263, 295, 671, 703 |
| AsiGI | ACCGGT | 1 cut(s) | 342 |
| Asp718I | GGTACC | 1 cut(s) | 876 |
| AspLEI | GCGC | 5 cut(s) | 107, 212, 245, 415, 454 |
| AspS9I | GGNCC | 5 cut(s) | 420, 483, 520, 665, 679 |
| AsuC2I | CCSGG | 1 cut(s) | 867 |
| AsuHPI | GGTGA | 2 cut(s) | 17, 25 |
| AsuII | TTCGAA | 1 cut(s) | 269 |
| AvaI | CYCGRG | 4 cut(s) | 72, 80, 588, 830 |
| AvaII | GGWCC | 3 cut(s) | 420, 483, 679 |
| BaeGI | GKGCMC | 3 cut(s) | 549, 849, 855 |
| BamHI | GGATCC | 1 cut(s) | 359 |
| BanI | GGYRCC | 4 cut(s) | 242, 544, 703, 876 |
| BanII | GRGCYC | 1 cut(s) | 153 |
| BauI | CACGAG | 1 cut(s) | 476 |
| BbsI | GAAGAC | 2 cut(s) | 227, 666 |
| Bbv12I | GWGCWC | 2 cut(s) | 153, 940 |
| BbvCI | CCTCAGC | 1 cut(s) | 416 |
| BbvI | GCAGC | 5 cut(s) | 84, 309, 480, 502, 574 |
| BccI | CCATC | 2 cut(s) | 310, 910 |
| BceAI | ACGGC | 8 cut(s) | 73, 106, 118, 166, 171, 179, 364, 652 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 592, 602, 626, 636, 685, 719 |
| BciT130I | CCWGG | 1 cut(s) | 527 |
| BciVI | GTATCC | 1 cut(s) | 936 |
| BcnI | CCSGG | 1 cut(s) | 867 |
| BcoDI | GTCTC | 2 cut(s) | 62, 232 |
| BfoI | RGCGCY | 3 cut(s) | 108, 246, 416 |
| BfuI | GTATCC | 1 cut(s) | 936 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 410 |
| Bme1390I | CCNGG | 2 cut(s) | 527, 867 |
| Bme18I | GGWCC | 3 cut(s) | 420, 483, 679 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 445 |
| BmeT110I | CYCGRG | 4 cut(s) | 72, 80, 588, 830 |
| BmgBI | CACGTC | 2 cut(s) | 447, 514 |
| BmgT120I | GGNCC | 5 cut(s) | 420, 483, 520, 665, 679 |
| BmiI | GGNNCC | 7 cut(s) | 180, 244, 361, 485, 546, 705, 878 |
| BmrFI | CCNGG | 2 cut(s) | 527, 867 |
| BmsI | GCATC | 4 cut(s) | 177, 630, 727, 804 |
| BpiI | GAAGAC | 2 cut(s) | 227, 666 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 416, 448 |
| Bpu10I | CCTNAGC | 1 cut(s) | 416 |
| Bpu14I | TTCGAA | 1 cut(s) | 269 |
| BpuMI | CCSGG | 1 cut(s) | 867 |
| BsaBI | GATNNNNATC | 1 cut(s) | 143 |
| BsaHI | GRCGYC | 4 cut(s) | 201, 243, 306, 698 |
| BsaI | GGTCTC | 1 cut(s) | 232 |
| BsaJI | CCNNGG | 6 cut(s) | 238, 470, 526, 760, 841, 880 |
| BsaWI | WCCGGW | 1 cut(s) | 342 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 528, 830, 872 |
| Bse118I | RCCGGY | 3 cut(s) | 342, 700, 823 |
| Bse8I | GATNNNNATC | 1 cut(s) | 143 |
| BseBI | CCWGG | 1 cut(s) | 527 |
| BseDI | CCNNGG | 6 cut(s) | 238, 470, 526, 760, 841, 880 |
| BseGI | GGATG | 2 cut(s) | 24, 645 |
| BseJI | GATNNNNATC | 1 cut(s) | 143 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 528, 830, 872 |
| BseMII | CTCAG | 3 cut(s) | 143, 269, 407 |
| BseRI | GAGGAG | 1 cut(s) | 413 |
| BseSI | GKGCMC | 3 cut(s) | 549, 849, 855 |
| BseX3I | CGGCCG | 2 cut(s) | 435, 467 |
| BseXI | GCAGC | 5 cut(s) | 84, 309, 480, 502, 574 |
| BsgI | GTGCAG | 1 cut(s) | 479 |
| Bsh1236I | CGCG | 7 cut(s) | 210, 212, 240, 379, 454, 542, 692 |
| Bsh1285I | CGRYCG | 3 cut(s) | 343, 438, 470 |
| BshFI | GGCC | 5 cut(s) | 404, 437, 469, 521, 667 |
| BshNI | GGYRCC | 4 cut(s) | 242, 544, 703, 876 |
| BshTI | ACCGGT | 1 cut(s) | 342 |
| BsiEI | CGRYCG | 3 cut(s) | 343, 438, 470 |
| BsiHKAI | GWGCWC | 2 cut(s) | 153, 940 |
| BsiHKCI | CYCGRG | 4 cut(s) | 72, 80, 588, 830 |
| BsiSI | CCGG | 6 cut(s) | 176, 343, 357, 701, 824, 866 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 528, 830, 872 |
| BsmAI | GTCTC | 2 cut(s) | 62, 232 |
| BsnI | GGCC | 5 cut(s) | 404, 437, 469, 521, 667 |
| Bso31I | GGTCTC | 1 cut(s) | 232 |
| BsoBI | CYCGRG | 4 cut(s) | 72, 80, 588, 830 |
| Bsp119I | TTCGAA | 1 cut(s) | 269 |
| Bsp1286I | GDGCHC | 5 cut(s) | 153, 549, 849, 855, 940 |
| Bsp143I | GATC | 4 cut(s) | 112, 138, 359, 531 |
| Bsp19I | CCATGG | 1 cut(s) | 880 |
| BspANI | GGCC | 5 cut(s) | 404, 437, 469, 521, 667 |
| BspCNI | CTCAG | 3 cut(s) | 142, 268, 408 |
| BspFNI | CGCG | 7 cut(s) | 210, 212, 240, 379, 454, 542, 692 |
| BspLI | GGNNCC | 7 cut(s) | 180, 244, 361, 485, 546, 705, 878 |
| BspPI | GGATC | 4 cut(s) | 133, 354, 367, 539 |
| BspT104I | TTCGAA | 1 cut(s) | 269 |
| BspT107I | GGYRCC | 4 cut(s) | 242, 544, 703, 876 |
| BspTNI | GGTCTC | 1 cut(s) | 232 |
| BsrBI | CCGCTC | 1 cut(s) | 248 |
| BsrFI | RCCGGY | 3 cut(s) | 342, 700, 823 |
| BssAI | RCCGGY | 3 cut(s) | 342, 700, 823 |
| BssECI | CCNNGG | 6 cut(s) | 238, 470, 526, 760, 841, 880 |
| BssMI | GATC | 4 cut(s) | 112, 138, 359, 531 |
| BssNI | GRCGYC | 4 cut(s) | 201, 243, 306, 698 |
| BssSI | CACGAG | 1 cut(s) | 476 |
| BssT1I | CCWWGG | 1 cut(s) | 880 |
| Bst2BI | CACGAG | 1 cut(s) | 476 |
| Bst2UI | CCWGG | 1 cut(s) | 527 |
| Bst4CI | ACNGT | 1 cut(s) | 226 |
| Bst6I | CTCTTC | 3 cut(s) | 3, 271, 629 |
| BstACI | GRCGYC | 4 cut(s) | 201, 243, 306, 698 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 715 |
| BstBI | TTCGAA | 1 cut(s) | 269 |
| BstC8I | GCNNGC | 4 cut(s) | 153, 604, 716, 863 |
| BstDEI | CTNAG | 3 cut(s) | 129, 255, 416 |
| BstDSI | CCRYGG | 4 cut(s) | 238, 760, 841, 880 |
| BstF5I | GGATG | 2 cut(s) | 24, 645 |
| BstFNI | CGCG | 7 cut(s) | 210, 212, 240, 379, 454, 542, 692 |
| BstH2I | RGCGCY | 3 cut(s) | 108, 246, 416 |
| BstHHI | GCGC | 5 cut(s) | 107, 212, 245, 415, 454 |
| BstKTI | GATC | 4 cut(s) | 115, 141, 362, 534 |
| BstMAI | GTCTC | 2 cut(s) | 62, 232 |
| BstMBI | GATC | 4 cut(s) | 112, 138, 359, 531 |
| BstMCI | CGRYCG | 3 cut(s) | 343, 438, 470 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 48, 57, 410, 466, 472, 499, 706, 715, 802 |
| BstNI | CCWGG | 1 cut(s) | 527 |
| BstNSI | RCATGY | 1 cut(s) | 865 |
| BstSCI | CCNGG | 2 cut(s) | 525, 865 |
| BstSLI | GKGCMC | 3 cut(s) | 549, 849, 855 |
| BstUI | CGCG | 7 cut(s) | 210, 212, 240, 379, 454, 542, 692 |
| BstV1I | GCAGC | 5 cut(s) | 84, 309, 480, 502, 574 |
| BstV2I | GAAGAC | 2 cut(s) | 227, 666 |
| BstX2I | RGATCY | 1 cut(s) | 359 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 767 |
| BstYI | RGATCY | 1 cut(s) | 359 |
| BstZI | CGGCCG | 2 cut(s) | 435, 467 |
| BsuI | GTATCC | 1 cut(s) | 936 |
| BsuRI | GGCC | 5 cut(s) | 404, 437, 469, 521, 667 |
| BtgI | CCRYGG | 4 cut(s) | 238, 760, 841, 880 |
| BtrI | CACGTC | 2 cut(s) | 447, 514 |
| BtsCI | GGATG | 2 cut(s) | 24, 645 |
| BtsI | GCAGTG | 1 cut(s) | 49 |
| BtsIMutI | CAGTG | 1 cut(s) | 49 |
| Cac8I | GCNNGC | 4 cut(s) | 153, 604, 716, 863 |
| CfoI | GCGC | 5 cut(s) | 107, 212, 245, 415, 454 |
| Cfr10I | RCCGGY | 3 cut(s) | 342, 700, 823 |
| Cfr13I | GGNCC | 5 cut(s) | 420, 483, 520, 665, 679 |
| Cfr42I | CCGCGG | 1 cut(s) | 241 |
| CseI | GACGC | 5 cut(s) | 201, 241, 466, 681, 706 |
| Csp6I | GTAC | 5 cut(s) | 28, 189, 346, 393, 877 |
| CspAI | ACCGGT | 1 cut(s) | 342 |
| CviAII | CATG | 7 cut(s) | 767, 820, 856, 862, 881, 907, 932 |
| CviQI | GTAC | 5 cut(s) | 28, 189, 346, 393, 877 |
| DdeI | CTNAG | 3 cut(s) | 129, 255, 416 |
| DinI | GGCGCC | 1 cut(s) | 244 |
| DpnI | GATC | 4 cut(s) | 114, 140, 361, 533 |
| DpnII | GATC | 4 cut(s) | 112, 138, 359, 531 |
| DraIII | CACNNNGTG | 1 cut(s) | 935 |
| DriI | GACNNNNNGTC | 1 cut(s) | 445 |
| EaeI | YGGCCR | 2 cut(s) | 435, 467 |
| EagI | CGGCCG | 2 cut(s) | 435, 467 |
| Eam1104I | CTCTTC | 3 cut(s) | 3, 271, 629 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 445 |
| EarI | CTCTTC | 3 cut(s) | 3, 271, 629 |
| Ecl136II | GAGCTC | 1 cut(s) | 151 |
| EclXI | CGGCCG | 2 cut(s) | 435, 467 |
| Eco130I | CCWWGG | 1 cut(s) | 880 |
| Eco24I | GRGCYC | 1 cut(s) | 153 |
| Eco31I | GGTCTC | 1 cut(s) | 232 |
| Eco47I | GGWCC | 3 cut(s) | 420, 483, 679 |
| Eco52I | CGGCCG | 2 cut(s) | 435, 467 |
| Eco53kI | GAGCTC | 1 cut(s) | 151 |
| Eco57I | CTGAAG | 2 cut(s) | 148, 482 |
| Eco88I | CYCGRG | 4 cut(s) | 72, 80, 588, 830 |
| EcoICRI | GAGCTC | 1 cut(s) | 151 |
| EcoRII | CCWGG | 1 cut(s) | 525 |
| EcoT14I | CCWWGG | 1 cut(s) | 880 |
| EcoT38I | GRGCYC | 1 cut(s) | 153 |
| EgeI | GGCGCC | 1 cut(s) | 244 |
| EheI | GGCGCC | 1 cut(s) | 244 |
| ErhI | CCWWGG | 1 cut(s) | 880 |
| FaeI | CATG | 7 cut(s) | 770, 823, 859, 865, 884, 910, 935 |
| FaiI | YATR | 9 cut(s) | 560, 768, 794, 821, 857, 863, 882, 908, 933 |
| FatI | CATG | 7 cut(s) | 766, 819, 855, 861, 880, 906, 931 |
| FauI | CCCGC | 5 cut(s) | 85, 495, 728, 742, 810 |
| FblI | GTMKAC | 3 cut(s) | 198, 330, 695 |
| FokI | GGATG | 2 cut(s) | 31, 652 |
| FriOI | GRGCYC | 1 cut(s) | 153 |
| GlaI | GCGC | 5 cut(s) | 106, 211, 244, 414, 453 |
| HaeII | RGCGCY | 3 cut(s) | 108, 246, 416 |
| HaeIII | GGCC | 5 cut(s) | 404, 437, 469, 521, 667 |
| HapII | CCGG | 6 cut(s) | 176, 343, 357, 701, 824, 866 |
| HgaI | GACGC | 5 cut(s) | 201, 241, 466, 681, 706 |
| HhaI | GCGC | 5 cut(s) | 107, 212, 245, 415, 454 |
| Hin1I | GRCGYC | 4 cut(s) | 201, 243, 306, 698 |
| Hin1II | CATG | 7 cut(s) | 770, 823, 859, 865, 884, 910, 935 |
| Hin6I | GCGC | 5 cut(s) | 105, 210, 243, 413, 452 |
| HinP1I | GCGC | 5 cut(s) | 105, 210, 243, 413, 452 |
| HincII | GTYRAC | 5 cut(s) | 199, 205, 331, 696, 837 |
| HindII | GTYRAC | 5 cut(s) | 199, 205, 331, 696, 837 |
| HinfI | GANTC | 6 cut(s) | 70, 365, 407, 725, 742, 890 |
| HpaII | CCGG | 6 cut(s) | 176, 343, 357, 701, 824, 866 |
| HphI | GGTGA | 2 cut(s) | 17, 25 |
| Hpy166II | GTNNAC | 7 cut(s) | 199, 205, 331, 483, 511, 696, 837 |
| Hpy188I | TCNGA | 3 cut(s) | 364, 679, 756 |
| Hpy188III | TCNNGA | 5 cut(s) | 80, 229, 369, 535, 722 |
| Hpy8I | GTNNAC | 7 cut(s) | 199, 205, 331, 483, 511, 696, 837 |
| HpyAV | CCTTC | 3 cut(s) | 26, 172, 572 |
| HpyCH4III | ACNGT | 1 cut(s) | 226 |
| HpyCH4IV | ACGT | 6 cut(s) | 201, 306, 446, 513, 573, 660 |
| HpyCH4V | TGCA | 5 cut(s) | 496, 562, 613, 643, 718 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 48, 57, 410, 466, 472, 499, 706, 715, 802 |
| HpyF3I | CTNAG | 3 cut(s) | 129, 255, 416 |
| HpySE526I | ACGT | 6 cut(s) | 201, 306, 446, 513, 573, 660 |
| Hsp92I | GRCGYC | 4 cut(s) | 201, 243, 306, 698 |
| Hsp92II | CATG | 7 cut(s) | 770, 823, 859, 865, 884, 910, 935 |
| HspAI | GCGC | 5 cut(s) | 105, 210, 243, 413, 452 |
| KasI | GGCGCC | 1 cut(s) | 242 |
| KpnI | GGTACC | 1 cut(s) | 880 |
| KspI | CCGCGG | 1 cut(s) | 241 |
| Kzo9I | GATC | 4 cut(s) | 112, 138, 359, 531 |
| LmnI | GCTCC | 3 cut(s) | 178, 240, 943 |
| Lsp1109I | GCAGC | 5 cut(s) | 84, 309, 480, 502, 574 |
| LweI | GCATC | 4 cut(s) | 177, 630, 727, 804 |
| MaeII | ACGT | 6 cut(s) | 201, 306, 446, 513, 573, 660 |
| MalI | GATC | 4 cut(s) | 114, 140, 361, 533 |
| MbiI | CCGCTC | 1 cut(s) | 248 |
| MboI | GATC | 4 cut(s) | 112, 138, 359, 531 |
| MboII | GAAGA | 6 cut(s) | 20, 232, 258, 394, 646, 666 |
| MflI | RGATCY | 1 cut(s) | 359 |
| MhlI | GDGCHC | 5 cut(s) | 153, 549, 849, 855, 940 |
| MluCI | AATT | 1 cut(s) | 427 |
| Mly113I | GGCGCC | 1 cut(s) | 243 |
| MlyI | GAGTC | 4 cut(s) | 64, 734, 751, 899 |
| MnlI | CCTC | 9 cut(s) | 4, 9, 82, 319, 391, 394, 411, 465, 630 |
| MslI | CAYNNNNRTG | 3 cut(s) | 765, 771, 860 |
| MspA1I | CMGCKG | 3 cut(s) | 240, 493, 565 |
| MspI | CCGG | 6 cut(s) | 176, 343, 357, 701, 824, 866 |
| MspR9I | CCNGG | 2 cut(s) | 527, 867 |
| MvaI | CCWGG | 1 cut(s) | 527 |
| MvnI | CGCG | 7 cut(s) | 210, 212, 240, 379, 454, 542, 692 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 48, 57, 410, 466, 472, 499, 706, 715, 802 |
| NarI | GGCGCC | 1 cut(s) | 243 |
| NciI | CCSGG | 1 cut(s) | 867 |
| NcoI | CCATGG | 1 cut(s) | 880 |
| NdeII | GATC | 4 cut(s) | 112, 138, 359, 531 |
| NlaIII | CATG | 7 cut(s) | 770, 823, 859, 865, 884, 910, 935 |
| NlaIV | GGNNCC | 7 cut(s) | 180, 244, 361, 485, 546, 705, 878 |
| NmeAIII | GCCGAG | 3 cut(s) | 126, 413, 495 |
| NspI | RCATGY | 1 cut(s) | 865 |
| NspV | TTCGAA | 1 cut(s) | 269 |
| PaeI | GCATGC | 1 cut(s) | 865 |
| PaeR7I | CTCGAG | 2 cut(s) | 72, 80 |
| PcsI | WCGNNNNNNNCGW | 8 cut(s) | 60, 63, 179, 327, 330, 336, 360, 920 |
| PfeI | GAWTC | 2 cut(s) | 365, 407 |
| PflFI | GACNNNGTC | 1 cut(s) | 305 |
| PinAI | ACCGGT | 1 cut(s) | 342 |
| PleI | GAGTC | 4 cut(s) | 64, 733, 750, 898 |
| PluTI | GGCGCC | 1 cut(s) | 246 |
| PpsI | GAGTC | 4 cut(s) | 64, 733, 750, 898 |
| Psp124BI | GAGCTC | 1 cut(s) | 153 |
| Psp1406I | AACGTT | 1 cut(s) | 573 |
| Psp6I | CCWGG | 1 cut(s) | 525 |
| PspGI | CCWGG | 1 cut(s) | 525 |
| PspN4I | GGNNCC | 7 cut(s) | 180, 244, 361, 485, 546, 705, 878 |
| PspPI | GGNCC | 5 cut(s) | 420, 483, 520, 665, 679 |
| PspXI | VCTCGAGB | 1 cut(s) | 72 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 329, 361, 869, 901 |
| PsuI | RGATCY | 1 cut(s) | 359 |
| PsyI | GACNNNGTC | 1 cut(s) | 305 |
| PvuII | CAGCTG | 2 cut(s) | 493, 565 |
| RsaI | GTAC | 5 cut(s) | 29, 190, 347, 394, 878 |
| RsaNI | GTAC | 5 cut(s) | 28, 189, 346, 393, 877 |
| RseI | CAYNNNNRTG | 3 cut(s) | 765, 771, 860 |
| SacI | GAGCTC | 1 cut(s) | 153 |
| SacII | CCGCGG | 1 cut(s) | 241 |
| SalI | GTCGAC | 3 cut(s) | 197, 329, 694 |
| Sau3AI | GATC | 4 cut(s) | 112, 138, 359, 531 |
| Sau96I | GGNCC | 5 cut(s) | 420, 483, 520, 665, 679 |
| SchI | GAGTC | 4 cut(s) | 64, 734, 751, 899 |
| ScrFI | CCNGG | 2 cut(s) | 527, 867 |
| SduI | GDGCHC | 5 cut(s) | 153, 549, 849, 855, 940 |
| SfaNI | GCATC | 4 cut(s) | 177, 630, 727, 804 |
| SfoI | GGCGCC | 1 cut(s) | 244 |
| Sfr274I | CTCGAG | 2 cut(s) | 72, 80 |
| Sfr303I | CCGCGG | 1 cut(s) | 241 |
| SfuI | TTCGAA | 1 cut(s) | 269 |
| SgrAI | CRCCGGYG | 1 cut(s) | 700 |
| SgrBI | CCGCGG | 1 cut(s) | 241 |
| SgrDI | CGTCGACG | 2 cut(s) | 197, 694 |
| SinI | GGWCC | 3 cut(s) | 420, 483, 679 |
| SlaI | CTCGAG | 2 cut(s) | 72, 80 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 765, 771, 860 |
| SmlI | CTYRAG | 2 cut(s) | 72, 80 |
| SmoI | CTYRAG | 2 cut(s) | 72, 80 |
| SphI | GCATGC | 1 cut(s) | 865 |
| Sse9I | AATT | 1 cut(s) | 427 |
| SspDI | GGCGCC | 1 cut(s) | 242 |
| SstI | GAGCTC | 1 cut(s) | 153 |
| StyD4I | CCNGG | 2 cut(s) | 525, 865 |
| StyI | CCWWGG | 1 cut(s) | 880 |
| TaaI | ACNGT | 1 cut(s) | 226 |
| TaiI | ACGT | 6 cut(s) | 204, 309, 449, 516, 576, 663 |
| TaqII | GACCGA | 1 cut(s) | 437 |
| TasI | AATT | 1 cut(s) | 427 |
| TauI | GCSGC | 5 cut(s) | 51, 243, 248, 469, 709 |
| TfiI | GAWTC | 2 cut(s) | 365, 407 |
| TscAI | CASTG | 1 cut(s) | 49 |
| TseI | GCWGC | 5 cut(s) | 97, 297, 490, 493, 562 |
| TspDTI | ATGAA | 1 cut(s) | 584 |
| TspGWI | ACGGA | 1 cut(s) | 410 |
| TspRI | CASTG | 1 cut(s) | 49 |
| Tth111I | GACNNNGTC | 1 cut(s) | 305 |
| VpaK11BI | GGWCC | 3 cut(s) | 420, 483, 679 |
| XapI | RAATTY | 1 cut(s) | 427 |
| XceI | RCATGY | 1 cut(s) | 865 |
| XhoI | CTCGAG | 2 cut(s) | 72, 80 |
| XmiI | GTMKAC | 3 cut(s) | 198, 330, 695 |
| ZraI | GACGTC | 2 cut(s) | 202, 307 |