Rh5DG464800
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
73731528 .. 73736467
4940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG464800.1

Sequence Viewer

Length: 945 bp
ATGGGAGAGGAGGTGAGGATGAGCGAGTACGAAGGAGGCGGCAGCGGCGGCGACGGCGACGAGGAGAGGGTTTCGGAGTGGGAGGCCGGGCTTCCGATCGCCGATGATCTGACGCCGCTGTCTCAGCCGTTGATTCCGATGGAGCTGGCGTCGGCGTTCAGTATCTCGCCGGAGCCGTGCCGCACGGTGGTGGACGTCAACCGCGCGTCGCAGAAGACGGTGTCGACGCTGCGTGGCGGAGCTCACTCGCAGGCCTATTCGTCGAACTACAAGTCGTTCGAGGAGAACAACAACCGCAGCGACGAGCCGATGGTGGTGGAGCTGGACGAGACGGAGCCGTACTGCGGCGGCGGCGGCCGGGAAGGATCCGATTCGAGGAAATCGAGGAGGGTTGATAGCCCCGAGGAGGCGGATTCGGCGCTCCGGATCGAGAATTCCTCGGGCGGCGGAGACGACCCGTCGGGTCGGGCGGTCAAGAGGCCGAGGCTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTGGACGTGGTGGCCCACCTGGGGATCAAGAACGCGGTTCCCAAGACGATTATGCAGCTGATGAACGTGGAAGGATTGACGCGTGAGAATGTGGCCAGCCACTTGCAGAAGTACCGACTCTACTTGAAGAGGATGCAGGGCTTGTCCAACGAGGGCCCCTCCTCGTCCGACCCGCTTTTCGCCTCGACTCCGGTGCCGCAGAGTCTGCACGAGTCGGGTGGGAGCGGGCCGGGTCACAGACAGGGGCACATGCCCATTTCGATCCCCATGCCTTACCCGCCGGGCGCCATGGCTATGCCTGGTTACATGGGGATGTCCGGCGGGTACCATGGGTTCGAGTCGCATCCTTCGTATAACATGATGCAGCAGCACAAGTATGGTTCCATGGTGTCATACCCACCACATGTTGCTCCTAATGAGAAATGA

Protein Analysis

314

Amino Acids

34.12

Weight (kDa)

5.58

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 163 - 212 2.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 118
AatII GACGTC 1 cut(s) 198
Acc65I GGTACC 1 cut(s) 843
AccB1I GGYRCC 3 cut(s) 712, 803, 843
AccBSI CCGCTC 1 cut(s) 744
AccI GTMKAC 1 cut(s) 224
AccII CGCG 4 cut(s) 204, 206, 554, 601
AccIII TCCGGA 1 cut(s) 423
AclWI GGATC 5 cut(s) 360, 373, 434, 551, 775
AcoI YGGCCR 2 cut(s) 355, 612
AcsI RAATTY 1 cut(s) 433
AcyI GRCGYC 4 cut(s) 113, 149, 195, 804
AfaI GTAC 4 cut(s) 29, 341, 632, 845
AfiI CCNNNNNNNGG 5 cut(s) 187, 344, 375, 406, 540
AflIII ACRYGT 2 cut(s) 599, 922
AgsI TTSAA 1 cut(s) 646
AhdI GACNNNNNGTC 1 cut(s) 457
AjiI CACGTC 1 cut(s) 526
AjnI CCWGG 2 cut(s) 537, 817
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 5 cut(s) 145, 242, 322, 505, 577
AluI AGCT 5 cut(s) 145, 242, 322, 505, 577
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 3 cut(s) 126, 323, 444
AlwI GGATC 5 cut(s) 360, 373, 434, 551, 775
AlwNI CAGNNNCTG 1 cut(s) 724
Ama87I CYCGRG 2 cut(s) 401, 439
Aor13HI TCCGGA 1 cut(s) 423
AoxI GGCC 8 cut(s) 84, 252, 355, 479, 531, 612, 673, 746
ApaI GGGCCC 1 cut(s) 677
ApeKI GCWGC 8 cut(s) 42, 229, 297, 502, 505, 574, 883, 886
ApoI RAATTY 1 cut(s) 433
ArsI GACNNNNNNTTYG 4 cut(s) 257, 289, 680, 712
Asp718I GGTACC 1 cut(s) 843
AspLEI GCGC 3 cut(s) 206, 421, 806
AspS9I GGNCC 5 cut(s) 495, 532, 673, 674, 746
AsuC2I CCSGG 4 cut(s) 88, 359, 750, 801
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 2 cut(s) 401, 439
AvaII GGWCC 1 cut(s) 495
BaeGI GKGCMC 2 cut(s) 677, 768
BalI TGGCCA 1 cut(s) 614
BamHI GGATCC 1 cut(s) 365
BanI GGYRCC 3 cut(s) 712, 803, 843
BanII GRGCYC 2 cut(s) 244, 677
BauI CACGAG 1 cut(s) 728
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 8 cut(s) 54, 216, 309, 492, 514, 586, 895, 898
BccI CCATC 2 cut(s) 133, 304
BceAI ACGGC 4 cut(s) 70, 112, 160, 322
BcgI CGANNNNNNTGC 4 cut(s) 694, 728, 769, 803
BciT130I CCWGG 2 cut(s) 539, 819
BcnI CCSGG 4 cut(s) 88, 359, 750, 801
BcoDI GTCTC 3 cut(s) 126, 323, 444
BfoI RGCGCY 2 cut(s) 422, 807
Bme1390I CCNGG 6 cut(s) 88, 359, 539, 750, 801, 819
Bme18I GGWCC 1 cut(s) 495
BmeRI GACNNNNNGTC 1 cut(s) 457
BmeT110I CYCGRG 2 cut(s) 401, 439
BmgBI CACGTC 1 cut(s) 526
BmgT120I GGNCC 5 cut(s) 495, 532, 673, 674, 746
BmrFI CCNGG 6 cut(s) 88, 359, 539, 750, 801, 819
BmsI GCATC 3 cut(s) 642, 870, 871
BpiI GAAGAC 1 cut(s) 221
BplI GAGNNNNNCTC 4 cut(s) 422, 454, 662, 694
BpuMI CCSGG 4 cut(s) 88, 359, 750, 801
BsaHI GRCGYC 4 cut(s) 113, 149, 195, 804
BsaJI CCNNGG 7 cut(s) 402, 438, 482, 538, 807, 847, 903
BsaWI WCCGGW 2 cut(s) 423, 709
BsaXI ACNNNNNCTCC 3 cut(s) 27, 134, 164
Bsc4I CCNNNNNNNGG 5 cut(s) 187, 344, 375, 406, 540
BseAI TCCGGA 1 cut(s) 423
BseBI CCWGG 2 cut(s) 539, 819
BseDI CCNNGG 7 cut(s) 402, 438, 482, 538, 807, 847, 903
BseGI GGATG 4 cut(s) 24, 657, 837, 862
BseLI CCNNNNNNNGG 5 cut(s) 187, 344, 375, 406, 540
BseMII CTCAG 1 cut(s) 137
BseRI GAGGAG 6 cut(s) 23, 77, 296, 400, 419, 670
BseSI GKGCMC 2 cut(s) 677, 768
BseX3I CGGCCG 1 cut(s) 355
BseXI GCAGC 8 cut(s) 54, 216, 309, 492, 514, 586, 895, 898
BsgI GTGCAG 2 cut(s) 491, 710
Bsh1236I CGCG 4 cut(s) 204, 206, 554, 601
Bsh1285I CGRYCG 2 cut(s) 99, 358
BshFI GGCC 8 cut(s) 86, 254, 357, 481, 533, 614, 675, 748
BshNI GGYRCC 3 cut(s) 712, 803, 843
BsiEI CGRYCG 2 cut(s) 99, 358
BsiHKAI GWGCWC 1 cut(s) 244
BsiHKCI CYCGRG 2 cut(s) 401, 439
BsiSI CCGG 8 cut(s) 87, 170, 358, 424, 710, 749, 800, 837
BslI CCNNNNNNNGG 5 cut(s) 187, 344, 375, 406, 540
BsmAI GTCTC 3 cut(s) 126, 323, 444
BsmBI CGTCTC 2 cut(s) 323, 444
BsnI GGCC 8 cut(s) 86, 254, 357, 481, 533, 614, 675, 748
BsoBI CYCGRG 2 cut(s) 401, 439
Bsp120I GGGCCC 1 cut(s) 673
Bsp1286I GDGCHC 3 cut(s) 244, 677, 768
Bsp13I TCCGGA 1 cut(s) 423
Bsp143I GATC 6 cut(s) 96, 106, 365, 426, 543, 780
Bsp19I CCATGG 3 cut(s) 807, 847, 903
BspANI GGCC 8 cut(s) 86, 254, 357, 481, 533, 614, 675, 748
BspCNI CTCAG 1 cut(s) 136
BspEI TCCGGA 1 cut(s) 423
BspFNI CGCG 4 cut(s) 204, 206, 554, 601
BspPI GGATC 5 cut(s) 360, 373, 434, 551, 775
BspT107I GGYRCC 3 cut(s) 712, 803, 843
BsrBI CCGCTC 1 cut(s) 744
BssECI CCNNGG 7 cut(s) 402, 438, 482, 538, 807, 847, 903
BssMI GATC 6 cut(s) 96, 106, 365, 426, 543, 780
BssNI GRCGYC 4 cut(s) 113, 149, 195, 804
BssSI CACGAG 1 cut(s) 728
BssT1I CCWWGG 3 cut(s) 807, 847, 903
Bst2BI CACGAG 1 cut(s) 728
Bst2UI CCWGG 2 cut(s) 539, 819
Bst4CI ACNGT 2 cut(s) 187, 220
Bst6I CTCTTC 1 cut(s) 641
BstACI GRCGYC 4 cut(s) 113, 149, 195, 804
BstAPI GCANNNNNTGC 1 cut(s) 724
BstC8I GCNNGC 4 cut(s) 147, 252, 616, 746
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 3 cut(s) 807, 847, 903
BstF5I GGATG 4 cut(s) 24, 657, 837, 862
BstFNI CGCG 4 cut(s) 204, 206, 554, 601
BstH2I RGCGCY 2 cut(s) 422, 807
BstHHI GCGC 3 cut(s) 206, 421, 806
BstKTI GATC 6 cut(s) 99, 109, 368, 429, 546, 783
BstMAI GTCTC 3 cut(s) 126, 323, 444
BstMBI GATC 6 cut(s) 96, 106, 365, 426, 543, 780
BstMCI CGRYCG 2 cut(s) 99, 358
BstNI CCWGG 2 cut(s) 539, 819
BstNSI RCATGY 2 cut(s) 772, 926
BstSCI CCNGG 6 cut(s) 86, 357, 537, 748, 799, 817
BstSLI GKGCMC 2 cut(s) 677, 768
BstUI CGCG 4 cut(s) 204, 206, 554, 601
BstV1I GCAGC 8 cut(s) 54, 216, 309, 492, 514, 586, 895, 898
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BstZI CGGCCG 1 cut(s) 355
BsuRI GGCC 8 cut(s) 86, 254, 357, 481, 533, 614, 675, 748
BtgI CCRYGG 3 cut(s) 807, 847, 903
BtrI CACGTC 1 cut(s) 526
BtsCI GGATG 4 cut(s) 24, 657, 837, 862
Cac8I GCNNGC 4 cut(s) 147, 252, 616, 746
CaiI CAGNNNCTG 1 cut(s) 724
CfoI GCGC 3 cut(s) 206, 421, 806
Cfr13I GGNCC 5 cut(s) 495, 532, 673, 674, 746
CseI GACGC 5 cut(s) 121, 138, 195, 235, 607
Csp6I GTAC 4 cut(s) 28, 340, 631, 844
CviAII CATG 8 cut(s) 769, 787, 808, 826, 848, 877, 904, 923
CviQI GTAC 4 cut(s) 28, 340, 631, 844
DdeI CTNAG 1 cut(s) 123
DinI GGCGCC 1 cut(s) 805
DpnI GATC 6 cut(s) 98, 108, 367, 428, 545, 782
DpnII GATC 6 cut(s) 96, 106, 365, 426, 543, 780
DrdI GACNNNNNNGTC 1 cut(s) 118
DriI GACNNNNNGTC 1 cut(s) 457
DseDI GACNNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 2 cut(s) 355, 612
EagI CGGCCG 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 641
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 641
EciI GGCGGA 3 cut(s) 252, 425, 462
Ecl136II GAGCTC 1 cut(s) 242
EclXI CGGCCG 1 cut(s) 355
Eco130I CCWWGG 3 cut(s) 807, 847, 903
Eco147I AGGCCT 1 cut(s) 254
Eco24I GRGCYC 2 cut(s) 244, 677
Eco47I GGWCC 1 cut(s) 495
Eco52I CGGCCG 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 242
Eco88I CYCGRG 2 cut(s) 401, 439
EcoICRI GAGCTC 1 cut(s) 242
EcoO109I RGGNCCY 2 cut(s) 673, 674
EcoRI GAATTC 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 537, 817
EcoT14I CCWWGG 3 cut(s) 807, 847, 903
EcoT38I GRGCYC 2 cut(s) 244, 677
EgeI GGCGCC 1 cut(s) 805
EheI GGCGCC 1 cut(s) 805
ErhI CCWWGG 3 cut(s) 807, 847, 903
Esp3I CGTCTC 2 cut(s) 323, 444
FaeI CATG 8 cut(s) 772, 790, 811, 829, 851, 880, 907, 926
FatI CATG 8 cut(s) 768, 786, 807, 825, 847, 876, 903, 922
FauI CCCGC 5 cut(s) 507, 699, 737, 804, 833
FblI GTMKAC 1 cut(s) 224
FokI GGATG 4 cut(s) 31, 664, 844, 849
FriOI GRGCYC 2 cut(s) 244, 677
GlaI GCGC 3 cut(s) 205, 420, 805
HaeII RGCGCY 2 cut(s) 422, 807
HaeIII GGCC 8 cut(s) 86, 254, 357, 481, 533, 614, 675, 748
HapII CCGG 8 cut(s) 87, 170, 358, 424, 710, 749, 800, 837
HgaI GACGC 5 cut(s) 121, 138, 195, 235, 607
HhaI GCGC 3 cut(s) 206, 421, 806
Hin1I GRCGYC 4 cut(s) 113, 149, 195, 804
Hin1II CATG 8 cut(s) 772, 790, 811, 829, 851, 880, 907, 926
Hin6I GCGC 3 cut(s) 204, 419, 804
HinP1I GCGC 3 cut(s) 204, 419, 804
HincII GTYRAC 2 cut(s) 199, 225
HindII GTYRAC 2 cut(s) 199, 225
HinfI GANTC 8 cut(s) 133, 371, 413, 636, 706, 721, 731, 857
HpaII CCGG 8 cut(s) 87, 170, 358, 424, 710, 749, 800, 837
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 5 cut(s) 193, 199, 225, 495, 523
Hpy188I TCNGA 6 cut(s) 76, 96, 111, 138, 370, 688
Hpy188III TCNNGA 4 cut(s) 424, 430, 475, 547
Hpy8I GTNNAC 5 cut(s) 193, 199, 225, 495, 523
Hpy99I CGWCG 8 cut(s) 56, 62, 154, 211, 229, 265, 305, 463
HpyAV CCTTC 4 cut(s) 26, 356, 584, 876
HpyCH4III ACNGT 2 cut(s) 187, 220
HpyCH4IV ACGT 3 cut(s) 195, 525, 585
HpyCH4V TGCA 6 cut(s) 508, 574, 625, 655, 727, 883
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 3 cut(s) 195, 525, 585
Hsp92I GRCGYC 4 cut(s) 113, 149, 195, 804
Hsp92II CATG 8 cut(s) 772, 790, 811, 829, 851, 880, 907, 926
HspAI GCGC 3 cut(s) 204, 419, 804
KasI GGCGCC 1 cut(s) 803
Kpn2I TCCGGA 1 cut(s) 423
KpnI GGTACC 1 cut(s) 847
Kzo9I GATC 6 cut(s) 96, 106, 365, 426, 543, 780
LmnI GCTCC 8 cut(s) 142, 172, 239, 319, 334, 426, 741, 934
Lsp1109I GCAGC 8 cut(s) 54, 216, 309, 492, 514, 586, 895, 898
LweI GCATC 3 cut(s) 642, 870, 871
MaeII ACGT 3 cut(s) 195, 525, 585
MaeIII GTNAC 2 cut(s) 752, 821
MalI GATC 6 cut(s) 98, 108, 367, 428, 545, 782
MbiI CCGCTC 1 cut(s) 744
MboI GATC 6 cut(s) 96, 106, 365, 426, 543, 780
MboII GAAGA 2 cut(s) 226, 658
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 3 cut(s) 244, 677, 768
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 1 cut(s) 433
MluI ACGCGT 1 cut(s) 599
MluNI TGGCCA 1 cut(s) 614
Mly113I GGCGCC 1 cut(s) 804
MlyI GAGTC 5 cut(s) 630, 700, 730, 740, 866
MmeI TCCRAC 2 cut(s) 690, 711
Mox20I TGGCCA 1 cut(s) 614
MroI TCCGGA 1 cut(s) 423
MscI TGGCCA 1 cut(s) 614
MslI CAYNNNNRTG 4 cut(s) 188, 812, 830, 894
Msp20I TGGCCA 1 cut(s) 614
MspA1I CMGCKG 4 cut(s) 45, 118, 505, 577
MspI CCGG 8 cut(s) 87, 170, 358, 424, 710, 749, 800, 837
MspR9I CCNGG 6 cut(s) 88, 359, 539, 750, 801, 819
MvaI CCWGG 2 cut(s) 539, 819
MvnI CGCG 4 cut(s) 204, 206, 554, 601
NarI GGCGCC 1 cut(s) 804
NciI CCSGG 4 cut(s) 88, 359, 750, 801
NcoI CCATGG 3 cut(s) 807, 847, 903
NdeII GATC 6 cut(s) 96, 106, 365, 426, 543, 780
NlaIII CATG 8 cut(s) 772, 790, 811, 829, 851, 880, 907, 926
NmeAIII GCCGAG 1 cut(s) 507
NmuCI GTSAC 1 cut(s) 752
NspI RCATGY 2 cut(s) 772, 926
OliI CACNNNNGTG 1 cut(s) 188
PceI AGGCCT 1 cut(s) 254
PciI ACATGT 1 cut(s) 922
PcsI WCGNNNNNNNCGW 3 cut(s) 173, 380, 866
PfeI GAWTC 3 cut(s) 133, 371, 413
PflFI GACNNNGTC 1 cut(s) 220
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 5 cut(s) 630, 700, 729, 739, 865
PluTI GGCGCC 1 cut(s) 807
PpsI GAGTC 5 cut(s) 630, 700, 729, 739, 865
PscI ACATGT 1 cut(s) 922
Psp124BI GAGCTC 1 cut(s) 244
Psp6I CCWGG 2 cut(s) 537, 817
PspGI CCWGG 2 cut(s) 537, 817
PspOMI GGGCCC 1 cut(s) 673
PspPI GGNCC 5 cut(s) 495, 532, 673, 674, 746
PsrI GAACNNNNNNTAC 2 cut(s) 836, 868
PstNI CAGNNNCTG 1 cut(s) 724
PsuI RGATCY 1 cut(s) 365
PsyI GACNNNGTC 1 cut(s) 220
PvuI CGATCG 1 cut(s) 99
PvuII CAGCTG 2 cut(s) 505, 577
RsaI GTAC 4 cut(s) 29, 341, 632, 845
RsaNI GTAC 4 cut(s) 28, 340, 631, 844
RseI CAYNNNNRTG 4 cut(s) 188, 812, 830, 894
SacI GAGCTC 1 cut(s) 244
SalI GTCGAC 1 cut(s) 223
Sau3AI GATC 6 cut(s) 96, 106, 365, 426, 543, 780
Sau96I GGNCC 5 cut(s) 495, 532, 673, 674, 746
SchI GAGTC 5 cut(s) 630, 700, 730, 740, 866
ScrFI CCNGG 6 cut(s) 88, 359, 539, 750, 801, 819
SduI GDGCHC 3 cut(s) 244, 677, 768
SfaNI GCATC 3 cut(s) 642, 870, 871
SfoI GGCGCC 1 cut(s) 805
SinI GGWCC 1 cut(s) 495
SmiMI CAYNNNNRTG 4 cut(s) 188, 812, 830, 894
Sse9I AATT 1 cut(s) 433
SseBI AGGCCT 1 cut(s) 254
SspDI GGCGCC 1 cut(s) 803
SstI GAGCTC 1 cut(s) 244
StuI AGGCCT 1 cut(s) 254
StyD4I CCNGG 6 cut(s) 86, 357, 537, 748, 799, 817
StyI CCWWGG 3 cut(s) 807, 847, 903
TaaI ACNGT 2 cut(s) 187, 220
TaiI ACGT 3 cut(s) 198, 528, 588
TaqI TCGA 9 cut(s) 224, 263, 279, 374, 383, 429, 704, 779, 855
TasI AATT 1 cut(s) 433
TfiI GAWTC 3 cut(s) 133, 371, 413
TseFI GTSAC 1 cut(s) 752
TseI GCWGC 8 cut(s) 42, 229, 297, 502, 505, 574, 883, 886
Tsp45I GTSAC 1 cut(s) 752
TspDTI ATGAA 1 cut(s) 596
TspGWI ACGGA 1 cut(s) 347
Tth111I GACNNNGTC 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 495
XapI RAATTY 1 cut(s) 433
XceI RCATGY 2 cut(s) 772, 926
XmiI GTMKAC 1 cut(s) 224
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.