MD11G1095900.v1.1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
7969856 .. 7972385
2530 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1095900.v1.1.491

Sequence Viewer

Length: 990 bp
ATGGGTGAGGAGGTGAGGATGAGTGAGTACGAAGGCGGTGGCAGCGGTGGCGACGATGGAGACGACGAGGAGCGAGTTTCCGAGTGGGAGACGGGGCTGCCGAGCGCCGACGACCTGACTCCCTTATCTCAGCCGTTGATTCCGATCGAATTAGCCTCGGCCTTCAGCATCTCGCCGGAGCCCTCCCGCACGGCGGTCGACGTCAACCGCGCGTCGCAGAAGACGGTCTCGACGCTCCGCGGCGGCGCCCACTCCCAGGGCTTCTCGTCGAACTACAAGTCGTTCGACGAGAACCGCAGCGACGACGTGGAGCCGATGATCGTGGAGGTGGACGAGAGCGGCGAGCGGTACGGATCCGATTCGAGAAAGTCGCGGAAGGTCGATTGCAGTACAGAGGAGGCGGATTCGACGCTGAGGACCGAGAATTTATCGCCGGAAGACACGTCAGCGCGGACTCTGAAGCGGCCGCGGCTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTGGACGTGGTGGCCCACCTGGGGATCAAGAACGCGGTGCCCAAGACGATTATGCAGATGATGAACGTCGAGGGATTGACCCGCGAAAATGTCGCGAGCCACTTGCAGAAGTACCGCCTCTACTTGAAGAGGATGCAAGGGTTATCCGGCGACGTGGGGCCCTCCTTGTCGGACCAGCTTTTCGCTACCACGCCTGTCCCGCAGAGCTTGCACCACGAGTCTGGCGGCGACTGCGGCGGGGGGTCCGGTCCGGCGGGTTCGGGGCAGAGCCACGGTCACGGAAATGGGCAGTTTTCGTTTCCGATGCCGTACCCGCCTCCCGGGATGATGCAGATGCCGGTTCTTGGGTTGAGCCAGGGGCATGGGCACATGAGCATGCCCGGCGGTGCGGGGGGTCACGGCGGTGGGTACCATGGGTTCGAGTCGCACCGTTACAACATGGGTTCGATGGTTTCGTACCAACATACTGCTTCGAATGACAAATGA

Protein Analysis

330

Amino Acids

35.41

Weight (kDa)

5.42

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 158 - 207 1.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
Acc65I GGTACC 1 cut(s) 912
AccB1I GGYRCC 3 cut(s) 245, 541, 912
AccBSI CCGCTC 2 cut(s) 339, 346
AccI GTMKAC 1 cut(s) 198
AccII CGCG 9 cut(s) 210, 212, 240, 373, 451, 469, 539, 588, 599
AclWI GGATC 3 cut(s) 348, 361, 536
AcoI YGGCCR 1 cut(s) 464
AcsI RAATTY 1 cut(s) 424
AcuI CTGAAG 2 cut(s) 148, 479
AcyI GRCGYC 2 cut(s) 201, 246
AfaI GTAC 7 cut(s) 29, 350, 391, 617, 815, 914, 962
AfiI CCNNNNNNNGG 5 cut(s) 193, 256, 525, 824, 848
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 1 cut(s) 631
AjiI CACGTC 4 cut(s) 307, 444, 511, 658
AjnI CCWGG 3 cut(s) 255, 522, 858
AleI CACNNNNGTG 1 cut(s) 906
AluBI AGCT 3 cut(s) 490, 682, 711
AluI AGCT 3 cut(s) 490, 682, 711
Alw26I GTCTC 3 cut(s) 54, 83, 232
AlwI GGATC 3 cut(s) 348, 361, 536
Ama87I CYCGRG 1 cut(s) 824
AoxI GGCC 4 cut(s) 159, 464, 516, 662
ApaI GGGCCC 1 cut(s) 666
ApeKI GCWGC 5 cut(s) 42, 97, 297, 487, 490
ApoI RAATTY 1 cut(s) 424
ArsI GACNNNNNNTTYG 4 cut(s) 263, 295, 668, 700
Asp718I GGTACC 1 cut(s) 912
AspLEI GCGC 4 cut(s) 107, 212, 248, 451
AspS9I GGNCC 8 cut(s) 417, 480, 517, 662, 663, 676, 747, 752
AsuC2I CCSGG 3 cut(s) 825, 826, 885
AsuHPI GGTGA 2 cut(s) 17, 25
AsuII TTCGAA 1 cut(s) 977
AvaI CYCGRG 1 cut(s) 824
AvaII GGWCC 5 cut(s) 417, 480, 676, 747, 752
BaeGI GKGCMC 3 cut(s) 546, 666, 873
BamHI GGATCC 1 cut(s) 353
BanI GGYRCC 3 cut(s) 245, 541, 912
BanII GRGCYC 2 cut(s) 183, 666
BauI CACGAG 1 cut(s) 719
BbsI GAAGAC 2 cut(s) 227, 444
BbvCI CCTCAGC 1 cut(s) 413
BbvI GCAGC 5 cut(s) 54, 84, 309, 477, 499
BccI CCATC 2 cut(s) 50, 946
BceAI ACGGC 4 cut(s) 118, 207, 796, 919
BcgI CGANNNNNNTGC 4 cut(s) 178, 212, 589, 623
BciT130I CCWGG 3 cut(s) 257, 524, 860
BcnI CCSGG 3 cut(s) 825, 826, 885
BcoDI GTCTC 3 cut(s) 54, 83, 232
BfoI RGCGCY 2 cut(s) 108, 249
Bme1390I CCNGG 6 cut(s) 257, 524, 825, 826, 860, 885
Bme18I GGWCC 5 cut(s) 417, 480, 676, 747, 752
BmeT110I CYCGRG 1 cut(s) 824
BmgBI CACGTC 4 cut(s) 307, 444, 511, 658
BmgT120I GGNCC 8 cut(s) 417, 480, 517, 662, 663, 676, 747, 752
BmrFI CCNGG 6 cut(s) 257, 524, 825, 826, 860, 885
BmsI GCATC 5 cut(s) 177, 627, 798, 822, 828
BpiI GAAGAC 2 cut(s) 227, 444
Bpu10I CCTNAGC 1 cut(s) 413
Bpu14I TTCGAA 1 cut(s) 977
BpuMI CCSGG 3 cut(s) 825, 826, 885
BsaBI GATNNNNATC 1 cut(s) 143
BsaHI GRCGYC 2 cut(s) 201, 246
BsaI GGTCTC 1 cut(s) 232
BsaWI WCCGGW 1 cut(s) 749
Bsc4I CCNNNNNNNGG 5 cut(s) 193, 256, 525, 824, 848
Bse118I RCCGGY 1 cut(s) 841
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 3 cut(s) 257, 524, 860
BseGI GGATG 3 cut(s) 24, 642, 834
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 5 cut(s) 193, 256, 525, 824, 848
BseMII CTCAG 2 cut(s) 143, 404
BseRI GAGGAG 3 cut(s) 23, 83, 410
BseSI GKGCMC 3 cut(s) 546, 666, 873
BseX3I CGGCCG 1 cut(s) 464
BseXI GCAGC 5 cut(s) 54, 84, 309, 477, 499
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 9 cut(s) 210, 212, 240, 373, 451, 469, 539, 588, 599
Bsh1285I CGRYCG 3 cut(s) 147, 198, 467
BshFI GGCC 4 cut(s) 161, 466, 518, 664
BshNI GGYRCC 3 cut(s) 245, 541, 912
BsiEI CGRYCG 3 cut(s) 147, 198, 467
BsiHKCI CYCGRG 1 cut(s) 824
BsiSI CCGG 8 cut(s) 176, 434, 651, 750, 755, 825, 842, 885
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 5 cut(s) 193, 256, 525, 824, 848
BsmAI GTCTC 3 cut(s) 54, 83, 232
BsmBI CGTCTC 2 cut(s) 54, 83
BsmFI GGGAC 1 cut(s) 686
BsnI GGCC 4 cut(s) 161, 466, 518, 664
Bso31I GGTCTC 1 cut(s) 232
BsoBI CYCGRG 1 cut(s) 824
Bsp119I TTCGAA 1 cut(s) 977
Bsp120I GGGCCC 1 cut(s) 662
Bsp1286I GDGCHC 4 cut(s) 183, 546, 666, 873
Bsp143I GATC 4 cut(s) 144, 318, 353, 528
Bsp19I CCATGG 1 cut(s) 916
Bsp68I TCGCGA 1 cut(s) 599
BspANI GGCC 4 cut(s) 161, 466, 518, 664
BspCNI CTCAG 2 cut(s) 142, 405
BspFNI CGCG 9 cut(s) 210, 212, 240, 373, 451, 469, 539, 588, 599
BspPI GGATC 3 cut(s) 348, 361, 536
BspT104I TTCGAA 1 cut(s) 977
BspT107I GGYRCC 3 cut(s) 245, 541, 912
BspTNI GGTCTC 1 cut(s) 232
BsrBI CCGCTC 2 cut(s) 339, 346
BsrFI RCCGGY 1 cut(s) 841
BssAI RCCGGY 1 cut(s) 841
BssMI GATC 4 cut(s) 144, 318, 353, 528
BssNI GRCGYC 2 cut(s) 201, 246
BssSI CACGAG 1 cut(s) 719
BssT1I CCWWGG 1 cut(s) 916
Bst2BI CACGAG 1 cut(s) 719
Bst2UI CCWGG 3 cut(s) 257, 524, 860
Bst4CI ACNGT 3 cut(s) 226, 779, 935
Bst6I CTCTTC 1 cut(s) 626
BstACI GRCGYC 2 cut(s) 201, 246
BstAPI GCANNNNNTGC 1 cut(s) 712
BstBI TTCGAA 1 cut(s) 977
BstC8I GCNNGC 4 cut(s) 344, 601, 713, 881
BstDEI CTNAG 2 cut(s) 129, 413
BstDSI CCRYGG 4 cut(s) 238, 467, 775, 916
BstF5I GGATG 3 cut(s) 24, 642, 834
BstFNI CGCG 9 cut(s) 210, 212, 240, 373, 451, 469, 539, 588, 599
BstH2I RGCGCY 2 cut(s) 108, 249
BstHHI GCGC 4 cut(s) 107, 212, 248, 451
BstKTI GATC 4 cut(s) 147, 321, 356, 531
BstMAI GTCTC 3 cut(s) 54, 83, 232
BstMBI GATC 4 cut(s) 144, 318, 353, 528
BstMCI CGRYCG 3 cut(s) 147, 198, 467
BstNI CCWGG 3 cut(s) 257, 524, 860
BstNSI RCATGY 1 cut(s) 883
BstSCI CCNGG 6 cut(s) 255, 522, 823, 824, 858, 883
BstSLI GKGCMC 3 cut(s) 546, 666, 873
BstUI CGCG 9 cut(s) 210, 212, 240, 373, 451, 469, 539, 588, 599
BstV1I GCAGC 5 cut(s) 54, 84, 309, 477, 499
BstV2I GAAGAC 2 cut(s) 227, 444
BstX2I RGATCY 1 cut(s) 353
BstXI CCANNNNNNTGG 2 cut(s) 725, 866
BstYI RGATCY 1 cut(s) 353
BstZI CGGCCG 1 cut(s) 464
BsuRI GGCC 4 cut(s) 161, 466, 518, 664
BtgI CCRYGG 4 cut(s) 238, 467, 775, 916
BtrI CACGTC 4 cut(s) 307, 444, 511, 658
BtsCI GGATG 3 cut(s) 24, 642, 834
BtuMI TCGCGA 1 cut(s) 599
Cac8I GCNNGC 4 cut(s) 344, 601, 713, 881
CciNI GCGGCCGC 1 cut(s) 464
CfoI GCGC 4 cut(s) 107, 212, 248, 451
Cfr10I RCCGGY 1 cut(s) 841
Cfr13I GGNCC 8 cut(s) 417, 480, 517, 662, 663, 676, 747, 752
Cfr42I CCGCGG 2 cut(s) 241, 470
Cfr9I CCCGGG 1 cut(s) 824
CpoI CGGWCCG 1 cut(s) 752
CseI GACGC 3 cut(s) 201, 241, 418
Csp6I GTAC 7 cut(s) 28, 349, 390, 616, 814, 913, 961
CspI CGGWCCG 1 cut(s) 752
CviAII CATG 5 cut(s) 866, 874, 880, 917, 943
CviQI GTAC 7 cut(s) 28, 349, 390, 616, 814, 913, 961
DdeI CTNAG 2 cut(s) 129, 413
DinI GGCGCC 1 cut(s) 247
DpnI GATC 4 cut(s) 146, 320, 355, 530
DpnII GATC 4 cut(s) 144, 318, 353, 528
EaeI YGGCCR 1 cut(s) 464
EagI CGGCCG 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 626
EarI CTCTTC 1 cut(s) 626
EciI GGCGGA 1 cut(s) 416
EclXI CGGCCG 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 916
Eco24I GRGCYC 2 cut(s) 183, 666
Eco31I GGTCTC 1 cut(s) 232
Eco47I GGWCC 5 cut(s) 417, 480, 676, 747, 752
Eco52I CGGCCG 1 cut(s) 464
Eco57I CTGAAG 2 cut(s) 148, 479
Eco88I CYCGRG 1 cut(s) 824
EcoO109I RGGNCCY 2 cut(s) 662, 663
EcoRII CCWGG 3 cut(s) 255, 522, 858
EcoT14I CCWWGG 1 cut(s) 916
EcoT38I GRGCYC 2 cut(s) 183, 666
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 916
Esp3I CGTCTC 2 cut(s) 54, 83
FaeI CATG 5 cut(s) 869, 877, 883, 920, 946
FaiI YATR 7 cut(s) 557, 867, 875, 881, 918, 944, 969
FaqI GGGAC 1 cut(s) 686
FatI CATG 5 cut(s) 865, 873, 879, 916, 942
FauI CCCGC 8 cut(s) 194, 492, 593, 711, 734, 751, 825, 886
FblI GTMKAC 1 cut(s) 198
FokI GGATG 3 cut(s) 31, 649, 841
FriOI GRGCYC 2 cut(s) 183, 666
GlaI GCGC 4 cut(s) 106, 211, 247, 450
HaeII RGCGCY 2 cut(s) 108, 249
HaeIII GGCC 4 cut(s) 161, 466, 518, 664
HapII CCGG 8 cut(s) 176, 434, 651, 750, 755, 825, 842, 885
HgaI GACGC 3 cut(s) 201, 241, 418
HhaI GCGC 4 cut(s) 107, 212, 248, 451
Hin1I GRCGYC 2 cut(s) 201, 246
Hin1II CATG 5 cut(s) 869, 877, 883, 920, 946
Hin6I GCGC 4 cut(s) 105, 210, 246, 449
HinP1I GCGC 4 cut(s) 105, 210, 246, 449
HincII GTYRAC 2 cut(s) 199, 205
HindII GTYRAC 2 cut(s) 199, 205
HinfI GANTC 7 cut(s) 118, 139, 359, 404, 454, 722, 926
HpaII CCGG 8 cut(s) 176, 434, 651, 750, 755, 825, 842, 885
HphI GGTGA 2 cut(s) 17, 25
Hpy166II GTNNAC 5 cut(s) 199, 205, 331, 480, 508
Hpy188I TCNGA 6 cut(s) 82, 144, 358, 459, 676, 807
Hpy188III TCNNGA 4 cut(s) 229, 363, 532, 598
Hpy8I GTNNAC 5 cut(s) 199, 205, 331, 480, 508
HpyAV CCTTC 3 cut(s) 26, 172, 370
HpyCH4III ACNGT 3 cut(s) 226, 779, 935
HpyCH4IV ACGT 6 cut(s) 201, 306, 443, 510, 570, 657
HpyCH4V TGCA 7 cut(s) 387, 493, 559, 610, 640, 715, 835
HpyF3I CTNAG 2 cut(s) 129, 413
HpySE526I ACGT 6 cut(s) 201, 306, 443, 510, 570, 657
Hsp92I GRCGYC 2 cut(s) 201, 246
Hsp92II CATG 5 cut(s) 869, 877, 883, 920, 946
HspAI GCGC 4 cut(s) 105, 210, 246, 449
KasI GGCGCC 1 cut(s) 245
KpnI GGTACC 1 cut(s) 916
KspI CCGCGG 2 cut(s) 241, 470
Kzo9I GATC 4 cut(s) 144, 318, 353, 528
LmnI GCTCC 4 cut(s) 70, 178, 240, 310
Lsp1109I GCAGC 5 cut(s) 54, 84, 309, 477, 499
LweI GCATC 5 cut(s) 177, 627, 798, 822, 828
MaeII ACGT 6 cut(s) 201, 306, 443, 510, 570, 657
MaeIII GTNAC 3 cut(s) 779, 899, 935
MalI GATC 4 cut(s) 146, 320, 355, 530
MbiI CCGCTC 2 cut(s) 339, 346
MboI GATC 4 cut(s) 144, 318, 353, 528
MboII GAAGA 3 cut(s) 232, 449, 643
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 4 cut(s) 183, 546, 666, 873
MluCI AATT 2 cut(s) 149, 424
Mly113I GGCGCC 1 cut(s) 246
MlyI GAGTC 4 cut(s) 112, 448, 731, 935
MmeI TCCRAC 1 cut(s) 654
MslI CAYNNNNRTG 3 cut(s) 786, 878, 906
MspA1I CMGCKG 4 cut(s) 45, 240, 469, 490
MspI CCGG 8 cut(s) 176, 434, 651, 750, 755, 825, 842, 885
MspR9I CCNGG 6 cut(s) 257, 524, 825, 826, 860, 885
MvaI CCWGG 3 cut(s) 257, 524, 860
MvnI CGCG 9 cut(s) 210, 212, 240, 373, 451, 469, 539, 588, 599
NarI GGCGCC 1 cut(s) 246
NciI CCSGG 3 cut(s) 825, 826, 885
NcoI CCATGG 1 cut(s) 916
NdeII GATC 4 cut(s) 144, 318, 353, 528
NlaIII CATG 5 cut(s) 869, 877, 883, 920, 946
NmeAIII GCCGAG 2 cut(s) 126, 137
NmuCI GTSAC 2 cut(s) 779, 899
NotI GCGGCCGC 1 cut(s) 464
NruI TCGCGA 1 cut(s) 599
NspI RCATGY 1 cut(s) 883
NspV TTCGAA 1 cut(s) 977
OliI CACNNNNGTG 1 cut(s) 906
PaeI GCATGC 1 cut(s) 883
PasI CCCWGGG 1 cut(s) 256
PcsI WCGNNNNNNNCGW 4 cut(s) 60, 98, 339, 956
PfeI GAWTC 3 cut(s) 139, 359, 404
Ple19I CGATCG 1 cut(s) 147
PleI GAGTC 4 cut(s) 112, 448, 730, 934
PluTI GGCGCC 1 cut(s) 249
PpsI GAGTC 4 cut(s) 112, 448, 730, 934
Psp6I CCWGG 3 cut(s) 255, 522, 858
PspGI CCWGG 3 cut(s) 255, 522, 858
PspOMI GGGCCC 1 cut(s) 662
PspPI GGNCC 8 cut(s) 417, 480, 517, 662, 663, 676, 747, 752
PsrI GAACNNNNNNTAC 2 cut(s) 905, 937
PsuI RGATCY 1 cut(s) 353
PvuI CGATCG 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 490
RruI TCGCGA 1 cut(s) 599
RsaI GTAC 7 cut(s) 29, 350, 391, 617, 815, 914, 962
RsaNI GTAC 7 cut(s) 28, 349, 390, 616, 814, 913, 961
RseI CAYNNNNRTG 3 cut(s) 786, 878, 906
Rsr2I CGGWCCG 1 cut(s) 752
RsrII CGGWCCG 1 cut(s) 752
SacII CCGCGG 2 cut(s) 241, 470
SalI GTCGAC 1 cut(s) 197
Sau3AI GATC 4 cut(s) 144, 318, 353, 528
Sau96I GGNCC 8 cut(s) 417, 480, 517, 662, 663, 676, 747, 752
SchI GAGTC 4 cut(s) 112, 448, 731, 935
ScrFI CCNGG 6 cut(s) 257, 524, 825, 826, 860, 885
SduI GDGCHC 4 cut(s) 183, 546, 666, 873
SfaNI GCATC 5 cut(s) 177, 627, 798, 822, 828
SfoI GGCGCC 1 cut(s) 247
Sfr303I CCGCGG 2 cut(s) 241, 470
SfuI TTCGAA 1 cut(s) 977
SgrBI CCGCGG 2 cut(s) 241, 470
SinI GGWCC 5 cut(s) 417, 480, 676, 747, 752
SmaI CCCGGG 1 cut(s) 826
SmiMI CAYNNNNRTG 3 cut(s) 786, 878, 906
SphI GCATGC 1 cut(s) 883
Sse9I AATT 2 cut(s) 149, 424
SspDI GGCGCC 1 cut(s) 245
StyD4I CCNGG 6 cut(s) 255, 522, 823, 824, 858, 883
StyI CCWWGG 1 cut(s) 916
TaaI ACNGT 3 cut(s) 226, 779, 935
TaiI ACGT 6 cut(s) 204, 309, 446, 513, 573, 660
TaqII GACCGA 1 cut(s) 434
TasI AATT 2 cut(s) 149, 424
TatI WGTACW 1 cut(s) 389
TauI GCSGC 8 cut(s) 243, 246, 342, 466, 469, 472, 732, 741
TfiI GAWTC 3 cut(s) 139, 359, 404
TseFI GTSAC 2 cut(s) 779, 899
TseI GCWGC 5 cut(s) 42, 97, 297, 487, 490
Tsp45I GTSAC 2 cut(s) 779, 899
TspDTI ATGAA 1 cut(s) 581
TspGWI ACGGA 2 cut(s) 366, 798
TspMI CCCGGG 1 cut(s) 824
VpaK11BI GGWCC 5 cut(s) 417, 480, 676, 747, 752
XapI RAATTY 1 cut(s) 424
XceI RCATGY 1 cut(s) 883
XmaI CCCGGG 1 cut(s) 824
XmiI GTMKAC 1 cut(s) 198
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.