Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009474

Physical Location & Seq

Genomic Coordinates Forward (+)

72526853 .. 72530162

Gene Structure 3310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGAGAGGAGGTGAGGATGAGCGAGTACGAAGGAGGTGGCAGCGGCGGCGACGGCGATGAAGAGAGGGTTTCGGAGTGGGAGGCCGGGCTTCCGACCTCCGATGATCTGACGCCGCTATCTCAGCCGTTGATTCCGATGGAGCTGGCGTCGGCGTTCAGTATCTCGCCGGAGCCGTGCCGCTCGGTGGTGGATGTTAACCGCGCGTCGCAGAAGACGGTGTCGACGCTGCGTGGGGGAGCTCACTCGCAGGCGTATTCGTCGAACTACAAGTCGTTCGAGGAGAACAACAACCGCAGCGACGAGCCGATGGTGGTGGAGCTGGACGAGACGGAGCCGTACGGCGGCGGCGGCGGCGGGGAAGGATCCGATTCGAGGAAATCGAGGAGAGTTGATAGCCCCGAGGAGGCGGATTCGGCGCTCCGGTTCGAGAATTCCTCGGGCGGCGGCGGCGGCGGGGGCGGAGATGACCCGTCGGGTCGGGCGGTCAAGCGGCCGAGGCTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTGGACGTGGTGGCCCACCTGGGGATCAAGAACGCGGTTCCCAAGACGATTATGCAGCTGATGAACGTGGAAGGATTGACGCGTGAGAATGTGGCCAGCCACTTGCAAAAGTACCGACTCTACTTGAAGAGGATGCAGGGCTTGTCCAACGAGGGCCCCTCCTCGTCCGACCCGCTTTTCGCCTCGACTCCGGTACCACAGAGTCTGCACGAGTCGGGTGGAAGCGGCAGCAGCAGAAGTATGGTTCCATGGTGTCATACCCACCACATGTTGCTCCTAATGAGAAATGAAAAATCTTGCACATTAAACTCAGATTGTTCCAAGATACTAGAGTTGGACTTCATCGGAAGAGTTATAGCACCCTGCAACGGCGATAAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009909 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

306

Amino Acids

32.9

Weight (kDa)

5.28

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	168 - 217	2.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59570 AT5G59570
fragaria_vesca	FvH4_3g36890
malus_domestica	MD03G1086800.v1.1 MD11G1095900.v1.1
prunus_persica	Prupe.6G071400_v2.0.a1 Prupe.6G071400_v2.0.a1 Prupe.6G071400_v2.0.a1
pyrus_communis	pycom03g06870 pycom11g08120
rosa_chinensis	RchiOBHm_Chr5g0066111
rosa_laevigata	RLG00000035843
rosa_multiflora	Rmu_co8136506.1_g000001 Rmu_sc0002406.1_g000009
rosa_roxburghii	Rroxscaffold_1G00014900
rosa_rugosa	Rorug05G0376400 Rorug05G0376400
rosa_samantha	Rh5AG434900 Rh5BG451200 Rh5CG473500 Rh5DG464800
rosa_wichuraiana	Rw5G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	727
AccB1I	GGYRCC	1 cut(s)	727
AccBSI	CCGCTC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	224
AccII	CGCG	4 cut(s)	204, 206, 569, 616
AclWI	GGATC	3 cut(s)	360, 373, 566
AcoI	YGGCCR	2 cut(s)	494, 627
AcsI	RAATTY	1 cut(s)	433
AcyI	GRCGYC	2 cut(s)	113, 149
AfaI	GTAC	4 cut(s)	29, 341, 647, 729
AfiI	CCNNNNNNNGG	6 cut(s)	187, 344, 375, 406, 555, 902
AflIII	ACRYGT	2 cut(s)	614, 801
AgsI	TTSAA	1 cut(s)	661
AjiI	CACGTC	1 cut(s)	541
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	5 cut(s)	145, 242, 322, 520, 592
AluI	AGCT	5 cut(s)	145, 242, 322, 520, 592
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	3 cut(s)	360, 373, 566
AlwNI	CAGNNNCTG	1 cut(s)	739
Ama87I	CYCGRG	2 cut(s)	401, 439
AoxI	GGCC	5 cut(s)	84, 494, 546, 627, 688
ApaI	GGGCCC	1 cut(s)	692
ApeKI	GCWGC	8 cut(s)	42, 229, 297, 517, 520, 589, 762, 765
ApoI	RAATTY	1 cut(s)	433
ArsI	GACNNNNNNTTYG	4 cut(s)	257, 289, 695, 727
Asp718I	GGTACC	1 cut(s)	727
AspLEI	GCGC	2 cut(s)	206, 421
AspS9I	GGNCC	4 cut(s)	510, 547, 688, 689
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	25
AvaI	CYCGRG	2 cut(s)	401, 439
AvaII	GGWCC	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	692
BaeI	ACNNNNGTAYC	4 cut(s)	711, 744, 851, 884
BalI	TGGCCA	1 cut(s)	629
BamHI	GGATCC	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	727
BanII	GRGCYC	2 cut(s)	244, 692
BauI	CACGAG	1 cut(s)	743
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	8 cut(s)	54, 216, 309, 507, 529, 601, 774, 777
BccI	CCATC	2 cut(s)	133, 304
BceAI	ACGGC	5 cut(s)	70, 112, 160, 322, 358
BciT130I	CCWGG	1 cut(s)	554
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	863
BfoI	RGCGCY	1 cut(s)	422
Bme1390I	CCNGG	2 cut(s)	88, 554
Bme18I	GGWCC	1 cut(s)	510
BmeT110I	CYCGRG	2 cut(s)	401, 439
BmgBI	CACGTC	1 cut(s)	541
BmgT120I	GGNCC	4 cut(s)	510, 547, 688, 689
BmiI	GGNNCC	9 cut(s)	174, 336, 367, 512, 573, 690, 691, 729, 780
BmrFI	CCNGG	2 cut(s)	88, 554
BmsI	GCATC	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	221
BplI	GAGNNNNNCTC	4 cut(s)	422, 454, 677, 709
BpuMI	CCSGG	1 cut(s)	88
BsaHI	GRCGYC	2 cut(s)	113, 149
BsaJI	CCNNGG	5 cut(s)	402, 438, 497, 553, 782
BsaWI	WCCGGW	2 cut(s)	423, 724
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 134, 164
Bsc4I	CCNNNNNNNGG	6 cut(s)	187, 344, 375, 406, 555, 902
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	5 cut(s)	402, 438, 497, 553, 782
BseGI	GGATG	3 cut(s)	24, 199, 672
BseLI	CCNNNNNNNGG	6 cut(s)	187, 344, 375, 406, 555, 902
BseMII	CTCAG	2 cut(s)	137, 858
BseRI	GAGGAG	5 cut(s)	23, 296, 400, 419, 685
BseSI	GKGCMC	1 cut(s)	692
BseX3I	CGGCCG	1 cut(s)	494
BseXI	GCAGC	8 cut(s)	54, 216, 309, 507, 529, 601, 774, 777
BsgI	GTGCAG	2 cut(s)	506, 725
Bsh1236I	CGCG	4 cut(s)	204, 206, 569, 616
Bsh1285I	CGRYCG	1 cut(s)	497
BshFI	GGCC	5 cut(s)	86, 496, 548, 629, 690
BshNI	GGYRCC	1 cut(s)	727
BsiEI	CGRYCG	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	244
BsiHKCI	CYCGRG	2 cut(s)	401, 439
BsiSI	CCGG	4 cut(s)	87, 170, 424, 725
BsiWI	CGTACG	1 cut(s)	339
BslI	CCNNNNNNNGG	6 cut(s)	187, 344, 375, 406, 555, 902
BsmAI	GTCTC	1 cut(s)	323
BsmBI	CGTCTC	1 cut(s)	323
BsnI	GGCC	5 cut(s)	86, 496, 548, 629, 690
BsoBI	CYCGRG	2 cut(s)	401, 439
Bsp120I	GGGCCC	1 cut(s)	688
Bsp1286I	GDGCHC	2 cut(s)	244, 692
Bsp143I	GATC	3 cut(s)	106, 365, 558
Bsp19I	CCATGG	1 cut(s)	782
BspANI	GGCC	5 cut(s)	86, 496, 548, 629, 690
BspCNI	CTCAG	2 cut(s)	136, 857
BspFNI	CGCG	4 cut(s)	204, 206, 569, 616
BspLI	GGNNCC	9 cut(s)	174, 336, 367, 512, 573, 690, 691, 729, 780
BspPI	GGATC	3 cut(s)	360, 373, 566
BspT107I	GGYRCC	1 cut(s)	727
BsrBI	CCGCTC	1 cut(s)	183
BssECI	CCNNGG	5 cut(s)	402, 438, 497, 553, 782
BssMI	GATC	3 cut(s)	106, 365, 558
BssNI	GRCGYC	2 cut(s)	113, 149
BssSI	CACGAG	1 cut(s)	743
BssT1I	CCWWGG	1 cut(s)	782
Bst2BI	CACGAG	1 cut(s)	743
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	3 cut(s)	57, 656, 877
BstACI	GRCGYC	2 cut(s)	113, 149
BstC8I	GCNNGC	3 cut(s)	147, 252, 631
BstDEI	CTNAG	2 cut(s)	123, 844
BstDSI	CCRYGG	1 cut(s)	782
BstF5I	GGATG	3 cut(s)	24, 199, 672
BstFNI	CGCG	4 cut(s)	204, 206, 569, 616
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	2 cut(s)	206, 421
BstKTI	GATC	3 cut(s)	109, 368, 561
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	3 cut(s)	106, 365, 558
BstMCI	CGRYCG	1 cut(s)	497
BstNI	CCWGG	1 cut(s)	554
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	2 cut(s)	86, 552
BstSLI	GKGCMC	1 cut(s)	692
BstUI	CGCG	4 cut(s)	204, 206, 569, 616
BstV1I	GCAGC	8 cut(s)	54, 216, 309, 507, 529, 601, 774, 777
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
BstZI	CGGCCG	1 cut(s)	494
BsuRI	GGCC	5 cut(s)	86, 496, 548, 629, 690
BtgI	CCRYGG	1 cut(s)	782
BtgZI	GCGATG	1 cut(s)	72
BtrI	CACGTC	1 cut(s)	541
BtsCI	GGATG	3 cut(s)	24, 199, 672
Cac8I	GCNNGC	3 cut(s)	147, 252, 631
CaiI	CAGNNNCTG	1 cut(s)	739
CfoI	GCGC	2 cut(s)	206, 421
Cfr13I	GGNCC	4 cut(s)	510, 547, 688, 689
CseI	GACGC	5 cut(s)	121, 138, 195, 235, 622
Csp6I	GTAC	4 cut(s)	28, 340, 646, 728
CviAII	CATG	2 cut(s)	783, 802
CviQI	GTAC	4 cut(s)	28, 340, 646, 728
DdeI	CTNAG	2 cut(s)	123, 844
DpnI	GATC	3 cut(s)	108, 367, 560
DpnII	GATC	3 cut(s)	106, 365, 558
EaeI	YGGCCR	2 cut(s)	494, 627
EagI	CGGCCG	1 cut(s)	494
Eam1104I	CTCTTC	3 cut(s)	57, 656, 877
EarI	CTCTTC	3 cut(s)	57, 656, 877
EciI	GGCGGA	2 cut(s)	425, 477
Ecl136II	GAGCTC	1 cut(s)	242
EclXI	CGGCCG	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	782
Eco24I	GRGCYC	2 cut(s)	244, 692
Eco47I	GGWCC	1 cut(s)	510
Eco52I	CGGCCG	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	242
Eco88I	CYCGRG	2 cut(s)	401, 439
EcoICRI	GAGCTC	1 cut(s)	242
EcoO109I	RGGNCCY	2 cut(s)	688, 689
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	782
EcoT38I	GRGCYC	2 cut(s)	244, 692
ErhI	CCWWGG	1 cut(s)	782
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	2 cut(s)	786, 805
FaiI	YATR	6 cut(s)	587, 776, 784, 792, 803, 890
FatI	CATG	2 cut(s)	782, 801
FauI	CCCGC	4 cut(s)	350, 449, 522, 714
FblI	GTMKAC	1 cut(s)	224
FokI	GGATG	3 cut(s)	31, 206, 679
FriOI	GRGCYC	2 cut(s)	244, 692
FspBI	CTAG	1 cut(s)	863
GlaI	GCGC	2 cut(s)	205, 420
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	5 cut(s)	86, 496, 548, 629, 690
HapII	CCGG	4 cut(s)	87, 170, 424, 725
HgaI	GACGC	5 cut(s)	121, 138, 195, 235, 622
HhaI	GCGC	2 cut(s)	206, 421
Hin1I	GRCGYC	2 cut(s)	113, 149
Hin1II	CATG	2 cut(s)	786, 805
Hin6I	GCGC	2 cut(s)	204, 419
HinP1I	GCGC	2 cut(s)	204, 419
HincII	GTYRAC	2 cut(s)	199, 225
HindII	GTYRAC	2 cut(s)	199, 225
HinfI	GANTC	7 cut(s)	133, 371, 413, 651, 721, 736, 746
HpaI	GTTAAC	1 cut(s)	199
HpaII	CCGG	4 cut(s)	87, 170, 424, 725
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	4 cut(s)	199, 225, 510, 538
Hpy188I	TCNGA	9 cut(s)	76, 96, 103, 111, 138, 370, 703, 847, 881
Hpy188III	TCNNGA	2 cut(s)	430, 562
Hpy8I	GTNNAC	4 cut(s)	199, 225, 510, 538
Hpy99I	CGWCG	7 cut(s)	56, 154, 211, 229, 265, 305, 478
HpyAV	CCTTC	3 cut(s)	26, 356, 599
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	2 cut(s)	540, 600
HpyCH4V	TGCA	7 cut(s)	523, 589, 640, 670, 742, 834, 900
HpyF3I	CTNAG	2 cut(s)	123, 844
HpySE526I	ACGT	2 cut(s)	540, 600
Hsp92I	GRCGYC	2 cut(s)	113, 149
Hsp92II	CATG	2 cut(s)	786, 805
HspAI	GCGC	2 cut(s)	204, 419
KpnI	GGTACC	1 cut(s)	731
KspAI	GTTAAC	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	106, 365, 558
LmnI	GCTCC	7 cut(s)	142, 172, 239, 319, 334, 426, 813
Lsp1109I	GCAGC	8 cut(s)	54, 216, 309, 507, 529, 601, 774, 777
LweI	GCATC	1 cut(s)	657
MaeI	CTAG	1 cut(s)	863
MaeII	ACGT	2 cut(s)	540, 600
MalI	GATC	3 cut(s)	108, 367, 560
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	3 cut(s)	106, 365, 558
MboII	GAAGA	4 cut(s)	74, 226, 673, 894
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	2 cut(s)	244, 692
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	1 cut(s)	433
MluI	ACGCGT	1 cut(s)	614
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	4 cut(s)	645, 715, 745, 755
MmeI	TCCRAC	4 cut(s)	119, 705, 726, 849
Mox20I	TGGCCA	1 cut(s)	629
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	2 cut(s)	198, 839
Msp20I	TGGCCA	1 cut(s)	629
MspA1I	CMGCKG	3 cut(s)	45, 520, 592
MspI	CCGG	4 cut(s)	87, 170, 424, 725
MspR9I	CCNGG	2 cut(s)	88, 554
MvaI	CCWGG	1 cut(s)	554
MvnI	CGCG	4 cut(s)	204, 206, 569, 616
NciI	CCSGG	1 cut(s)	88
NcoI	CCATGG	1 cut(s)	782
NdeII	GATC	3 cut(s)	106, 365, 558
NlaIII	CATG	2 cut(s)	786, 805
NlaIV	GGNNCC	9 cut(s)	174, 336, 367, 512, 573, 690, 691, 729, 780
NmeAIII	GCCGAG	1 cut(s)	522
NspI	RCATGY	1 cut(s)	805
PciI	ACATGT	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	2 cut(s)	173, 380
PfeI	GAWTC	3 cut(s)	133, 371, 413
Pfl23II	CGTACG	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	220
PleI	GAGTC	4 cut(s)	645, 715, 744, 754
PpsI	GAGTC	4 cut(s)	645, 715, 744, 754
PscI	ACATGT	1 cut(s)	801
Psp124BI	GAGCTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspLI	CGTACG	1 cut(s)	339
PspN4I	GGNNCC	9 cut(s)	174, 336, 367, 512, 573, 690, 691, 729, 780
PspOMI	GGGCCC	1 cut(s)	688
PspPI	GGNCC	4 cut(s)	510, 547, 688, 689
PstNI	CAGNNNCTG	1 cut(s)	739
PsuI	RGATCY	1 cut(s)	365
PsyI	GACNNNGTC	1 cut(s)	220
PvuII	CAGCTG	2 cut(s)	520, 592
RsaI	GTAC	4 cut(s)	29, 341, 647, 729
RsaNI	GTAC	4 cut(s)	28, 340, 646, 728
SacI	GAGCTC	1 cut(s)	244
SalI	GTCGAC	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	198, 839
Sau3AI	GATC	3 cut(s)	106, 365, 558
Sau96I	GGNCC	4 cut(s)	510, 547, 688, 689
SchI	GAGTC	4 cut(s)	645, 715, 745, 755
ScrFI	CCNGG	2 cut(s)	88, 554
SduI	GDGCHC	2 cut(s)	244, 692
SfaNI	GCATC	1 cut(s)	657
SinI	GGWCC	1 cut(s)	510
Sse9I	AATT	1 cut(s)	433
SspMI	CTAG	1 cut(s)	863
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	2 cut(s)	86, 552
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	2 cut(s)	543, 603
TaqI	TCGA	7 cut(s)	224, 263, 279, 374, 383, 429, 719
TasI	AATT	1 cut(s)	433
TfiI	GAWTC	3 cut(s)	133, 371, 413
Tru1I	TTAA	2 cut(s)	198, 839
Tru9I	TTAA	2 cut(s)	198, 839
TseI	GCWGC	8 cut(s)	42, 229, 297, 517, 520, 589, 762, 765
TspDTI	ATGAA	4 cut(s)	75, 611, 837, 865
TspGWI	ACGGA	1 cut(s)	347
Tth111I	GACNNNGTC	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	510
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	224
XspI	CTAG	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.