FvH4_3g36890
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
31593283 .. 31595255
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36890.t1

Sequence Viewer

Length: 957 bp
ATGGGTGAGGAGGTGAGGATGAGCGAGTACGAAGGAGGCGGCAGCGGCGGCGACGGCGACGAGGAGAGAGTTTCCGAGTGGGAGACCGGGCTTCCGTCTGCTGATGATCTGACTCCGCTGTCTCAGCCGTTGATTCCGGTCGAGCTGGCCTCGGCGTTCAGTATCACGCCGGAGCCGTGCCGGACGTCGGTGGATGTGAACCGGGCGTCGCAGAAGACGGTGTCGACTCTGCGCGGCGGGGCCCACTCGCAGGCGTATTCGTCGAACTACAAGTCGTTTGACGAGAACAACGACAACAACAACCGGAGCGACGAGCCGATGGTGGTGGAGGTGGACGAGACGGAGCTCTACGGCGGCGAGGGATCCGATTCGAGGAAATCGAGGAAGGTGGACAGCCCCGAGGAGGCAGACTCGGCGCTCCGGATCGAGAATTCGTCCGGCGGCGGAGGCGGAGGGGGGGACGACCCGTCGGGTAGGGCGGTCAAGCGGCCGAGGCTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTAGACGTGGTGGCCCACCTGGGGATCAAGAACGCGGTTCCCAAGACGATTATGCAGCTGATGAACGTGGAAGGATTGACTCGAGAGAATGTGGCCAGCCACTTGCAGAAGTACCGCCTCTACTTGAAGAGGATGCAGGGTCTGTCCAACGAGGGCCCCTCCTCGTCCGACCCGCTGTTTGCCTCGACTCCGGTGCCGCAGAGTCTACACGAGTCAGGCGGTGGCGGGTCGGGTCACGGAGAAGGGCATGGGAATGGACACATGCCCATGTCTTACCCGCCGCCGGGAGCTATGATGGCTATACCCAGTTACATGGGCATGCCCGGCGGGTACCATGGGTTCGAGTCGCATCCTTCGTATAATATGATGCAGCAACAGTATGGTGGCATGGTGTCGTACCAACCACATGTTGCGCCTAATGAGAAATGA

Protein Analysis

319

Amino Acids

34.17

Weight (kDa)

5.16

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 166 - 215 2.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 118
AatII GACGTC 1 cut(s) 188
Acc65I GGTACC 1 cut(s) 858
AccB1I GGYRCC 2 cut(s) 721, 858
AccI GTMKAC 3 cut(s) 224, 531, 733
AccII CGCG 2 cut(s) 234, 563
AccIII TCCGGA 1 cut(s) 420
AclWI GGATC 4 cut(s) 357, 370, 431, 560
AcoI YGGCCR 2 cut(s) 488, 621
AcsI RAATTY 1 cut(s) 430
AcyI GRCGYC 2 cut(s) 185, 206
AfaI GTAC 4 cut(s) 29, 641, 860, 926
AfiI CCNNNNNNNGG 7 cut(s) 187, 250, 372, 403, 549, 811, 812
AflIII ACRYGT 1 cut(s) 934
AgsI TTSAA 1 cut(s) 655
AhdI GACNNNNNGTC 1 cut(s) 466
AjiI CACGTC 1 cut(s) 535
AjnI CCWGG 1 cut(s) 546
AluBI AGCT 5 cut(s) 145, 346, 514, 586, 818
AluI AGCT 5 cut(s) 145, 346, 514, 586, 818
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 3 cut(s) 77, 126, 332
AlwI GGATC 4 cut(s) 357, 370, 431, 560
AlwNI CAGNNNCTG 1 cut(s) 670
Ama87I CYCGRG 2 cut(s) 398, 609
Aor13HI TCCGGA 1 cut(s) 420
AoxI GGCC 6 cut(s) 147, 240, 488, 540, 621, 682
ApaI GGGCCC 2 cut(s) 244, 686
ApeKI GCWGC 5 cut(s) 42, 511, 514, 583, 898
ApoI RAATTY 1 cut(s) 430
ArsI GACNNNNNNTTYG 4 cut(s) 257, 289, 689, 721
Asp718I GGTACC 1 cut(s) 858
AspLEI GCGC 3 cut(s) 234, 418, 943
AspS9I GGNCC 6 cut(s) 240, 241, 504, 541, 682, 683
AsuC2I CCSGG 4 cut(s) 88, 203, 813, 852
AsuHPI GGTGA 2 cut(s) 17, 25
AvaI CYCGRG 2 cut(s) 398, 609
AvaII GGWCC 1 cut(s) 504
BaeGI GKGCMC 2 cut(s) 244, 686
BalI TGGCCA 1 cut(s) 623
BamHI GGATCC 1 cut(s) 362
BanI GGYRCC 2 cut(s) 721, 858
BanII GRGCYC 3 cut(s) 244, 348, 686
BauI CACGAG 1 cut(s) 737
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 5 cut(s) 54, 501, 523, 595, 910
BccI CCATC 2 cut(s) 313, 817
BceAI ACGGC 4 cut(s) 70, 112, 160, 367
BcgI CGANNNNNNTGC 2 cut(s) 703, 737
BciT130I CCWGG 1 cut(s) 548
BcnI CCSGG 4 cut(s) 88, 203, 813, 852
BcoDI GTCTC 3 cut(s) 77, 126, 332
BfoI RGCGCY 1 cut(s) 419
Bme1390I CCNGG 5 cut(s) 88, 203, 548, 813, 852
Bme18I GGWCC 1 cut(s) 504
BmeRI GACNNNNNGTC 1 cut(s) 466
BmeT110I CYCGRG 2 cut(s) 398, 609
BmgBI CACGTC 1 cut(s) 535
BmgT120I GGNCC 6 cut(s) 240, 241, 504, 541, 682, 683
BmrFI CCNGG 5 cut(s) 88, 203, 548, 813, 852
BmrI ACTGGG 1 cut(s) 828
BmsI GCATC 3 cut(s) 651, 885, 886
BmuI ACTGGG 1 cut(s) 828
BpiI GAAGAC 1 cut(s) 221
BplI GAGNNNNNCTC 6 cut(s) 134, 166, 395, 427, 671, 703
BpuMI CCSGG 4 cut(s) 88, 203, 813, 852
BsaHI GRCGYC 2 cut(s) 185, 206
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 5 cut(s) 150, 399, 491, 547, 862
BsaWI WCCGGW 4 cut(s) 136, 303, 420, 718
Bsc4I CCNNNNNNNGG 7 cut(s) 187, 250, 372, 403, 549, 811, 812
Bse1I ACTGG 1 cut(s) 834
BseAI TCCGGA 1 cut(s) 420
BseBI CCWGG 1 cut(s) 548
BseDI CCNNGG 5 cut(s) 150, 399, 491, 547, 862
BseGI GGATG 4 cut(s) 24, 199, 666, 877
BseLI CCNNNNNNNGG 7 cut(s) 187, 250, 372, 403, 549, 811, 812
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 834
BseRI GAGGAG 4 cut(s) 23, 77, 416, 679
BseSI GKGCMC 2 cut(s) 244, 686
BseX3I CGGCCG 1 cut(s) 488
BseXI GCAGC 5 cut(s) 54, 501, 523, 595, 910
BsgI GTGCAG 1 cut(s) 500
Bsh1236I CGCG 2 cut(s) 234, 563
Bsh1285I CGRYCG 2 cut(s) 141, 491
BshFI GGCC 6 cut(s) 149, 242, 490, 542, 623, 684
BshNI GGYRCC 2 cut(s) 721, 858
BsiEI CGRYCG 2 cut(s) 141, 491
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 2 cut(s) 398, 609
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 7 cut(s) 187, 250, 372, 403, 549, 811, 812
BsmAI GTCTC 3 cut(s) 77, 126, 332
BsmBI CGTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 6 cut(s) 149, 242, 490, 542, 623, 684
Bso31I GGTCTC 1 cut(s) 77
BsoBI CYCGRG 2 cut(s) 398, 609
Bsp120I GGGCCC 2 cut(s) 240, 682
Bsp1286I GDGCHC 3 cut(s) 244, 348, 686
Bsp13I TCCGGA 1 cut(s) 420
Bsp143I GATC 4 cut(s) 106, 362, 423, 552
Bsp19I CCATGG 1 cut(s) 862
BspANI GGCC 6 cut(s) 149, 242, 490, 542, 623, 684
BspCNI CTCAG 1 cut(s) 136
BspEI TCCGGA 1 cut(s) 420
BspFNI CGCG 2 cut(s) 234, 563
BspPI GGATC 4 cut(s) 357, 370, 431, 560
BspT107I GGYRCC 2 cut(s) 721, 858
BspTNI GGTCTC 1 cut(s) 77
BsrI ACTGG 1 cut(s) 834
BssECI CCNNGG 5 cut(s) 150, 399, 491, 547, 862
BssMI GATC 4 cut(s) 106, 362, 423, 552
BssNI GRCGYC 2 cut(s) 185, 206
BssSI CACGAG 1 cut(s) 737
BssT1I CCWWGG 1 cut(s) 862
Bst2BI CACGAG 1 cut(s) 737
Bst2UI CCWGG 1 cut(s) 548
Bst4CI ACNGT 2 cut(s) 220, 906
Bst6I CTCTTC 1 cut(s) 650
BstACI GRCGYC 2 cut(s) 185, 206
BstC8I GCNNGC 4 cut(s) 147, 252, 625, 848
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 1 cut(s) 862
BstF5I GGATG 4 cut(s) 24, 199, 666, 877
BstFNI CGCG 2 cut(s) 234, 563
BstH2I RGCGCY 1 cut(s) 419
BstHHI GCGC 3 cut(s) 234, 418, 943
BstKTI GATC 4 cut(s) 109, 365, 426, 555
BstMAI GTCTC 3 cut(s) 77, 126, 332
BstMBI GATC 4 cut(s) 106, 362, 423, 552
BstMCI CGRYCG 2 cut(s) 141, 491
BstNI CCWGG 1 cut(s) 548
BstNSI RCATGY 3 cut(s) 793, 850, 938
BstSCI CCNGG 5 cut(s) 86, 201, 546, 811, 850
BstSLI GKGCMC 2 cut(s) 244, 686
BstUI CGCG 2 cut(s) 234, 563
BstV1I GCAGC 5 cut(s) 54, 501, 523, 595, 910
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 362
BstXI CCANNNNNNTGG 1 cut(s) 841
BstYI RGATCY 1 cut(s) 362
BstZI CGGCCG 1 cut(s) 488
BsuRI GGCC 6 cut(s) 149, 242, 490, 542, 623, 684
BtgI CCRYGG 1 cut(s) 862
BtrI CACGTC 1 cut(s) 535
BtsCI GGATG 4 cut(s) 24, 199, 666, 877
Cac8I GCNNGC 4 cut(s) 147, 252, 625, 848
CaiI CAGNNNCTG 1 cut(s) 670
CfoI GCGC 3 cut(s) 234, 418, 943
Cfr13I GGNCC 6 cut(s) 240, 241, 504, 541, 682, 683
CseI GACGC 1 cut(s) 195
Csp6I GTAC 4 cut(s) 28, 640, 859, 925
CviAII CATG 8 cut(s) 776, 790, 796, 841, 847, 863, 916, 935
CviQI GTAC 4 cut(s) 28, 640, 859, 925
DdeI CTNAG 1 cut(s) 123
DpnI GATC 4 cut(s) 108, 364, 425, 554
DpnII GATC 4 cut(s) 106, 362, 423, 552
DrdI GACNNNNNNGTC 1 cut(s) 118
DriI GACNNNNNGTC 1 cut(s) 466
DseDI GACNNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 2 cut(s) 488, 621
EagI CGGCCG 1 cut(s) 488
Eam1104I CTCTTC 1 cut(s) 650
Eam1105I GACNNNNNGTC 1 cut(s) 466
EarI CTCTTC 1 cut(s) 650
EciI GGCGGA 2 cut(s) 459, 465
Ecl136II GAGCTC 1 cut(s) 346
EclXI CGGCCG 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 862
Eco24I GRGCYC 3 cut(s) 244, 348, 686
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 504
Eco52I CGGCCG 1 cut(s) 488
Eco53kI GAGCTC 1 cut(s) 346
Eco88I CYCGRG 2 cut(s) 398, 609
EcoICRI GAGCTC 1 cut(s) 346
EcoO109I RGGNCCY 3 cut(s) 240, 682, 683
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 546
EcoT14I CCWWGG 1 cut(s) 862
EcoT38I GRGCYC 3 cut(s) 244, 348, 686
ErhI CCWWGG 1 cut(s) 862
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 8 cut(s) 779, 793, 799, 844, 850, 866, 919, 938
FaqI GGGAC 1 cut(s) 473
FatI CATG 8 cut(s) 775, 789, 795, 840, 846, 862, 915, 934
FauI CCCGC 6 cut(s) 230, 516, 708, 746, 813, 848
FblI GTMKAC 3 cut(s) 224, 531, 733
FokI GGATG 4 cut(s) 31, 206, 673, 864
FriOI GRGCYC 3 cut(s) 244, 348, 686
GlaI GCGC 3 cut(s) 233, 417, 942
HaeII RGCGCY 1 cut(s) 419
HaeIII GGCC 6 cut(s) 149, 242, 490, 542, 623, 684
HgaI GACGC 1 cut(s) 195
HhaI GCGC 3 cut(s) 234, 418, 943
Hin1I GRCGYC 2 cut(s) 185, 206
Hin1II CATG 8 cut(s) 779, 793, 799, 844, 850, 866, 919, 938
Hin6I GCGC 3 cut(s) 232, 416, 941
HinP1I GCGC 3 cut(s) 232, 416, 941
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HphI GGTGA 2 cut(s) 17, 25
Hpy166II GTNNAC 7 cut(s) 199, 225, 334, 391, 504, 532, 734
Hpy188I TCNGA 4 cut(s) 76, 111, 367, 697
Hpy188III TCNNGA 4 cut(s) 421, 427, 556, 611
Hpy8I GTNNAC 7 cut(s) 199, 225, 334, 391, 504, 532, 734
Hpy99I CGWCG 7 cut(s) 56, 62, 190, 211, 265, 314, 472
HpyAV CCTTC 5 cut(s) 26, 379, 593, 764, 891
HpyCH4III ACNGT 2 cut(s) 220, 906
HpyCH4IV ACGT 3 cut(s) 185, 534, 594
HpyCH4V TGCA 5 cut(s) 517, 583, 634, 664, 898
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 3 cut(s) 185, 534, 594
Hsp92I GRCGYC 2 cut(s) 185, 206
Hsp92II CATG 8 cut(s) 779, 793, 799, 844, 850, 866, 919, 938
HspAI GCGC 3 cut(s) 232, 416, 941
Kpn2I TCCGGA 1 cut(s) 420
KpnI GGTACC 1 cut(s) 862
Kzo9I GATC 4 cut(s) 106, 362, 423, 552
LmnI GCTCC 5 cut(s) 172, 306, 343, 423, 815
Lsp1109I GCAGC 5 cut(s) 54, 501, 523, 595, 910
LweI GCATC 3 cut(s) 651, 885, 886
MaeII ACGT 3 cut(s) 185, 534, 594
MaeIII GTNAC 2 cut(s) 761, 836
MalI GATC 4 cut(s) 108, 364, 425, 554
MboI GATC 4 cut(s) 106, 362, 423, 552
MboII GAAGA 2 cut(s) 226, 667
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 3 cut(s) 244, 348, 686
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 1 cut(s) 430
MluNI TGGCCA 1 cut(s) 623
MlyI GAGTC 8 cut(s) 106, 220, 404, 601, 709, 739, 749, 881
MmeI TCCRAC 2 cut(s) 699, 720
Mox20I TGGCCA 1 cut(s) 623
MroI TCCGGA 1 cut(s) 420
MscI TGGCCA 1 cut(s) 623
MslI CAYNNNNRTG 3 cut(s) 780, 794, 845
Msp20I TGGCCA 1 cut(s) 623
MspA1I CMGCKG 5 cut(s) 45, 118, 514, 586, 703
MspR9I CCNGG 5 cut(s) 88, 203, 548, 813, 852
MvaI CCWGG 1 cut(s) 548
MvnI CGCG 2 cut(s) 234, 563
NciI CCSGG 4 cut(s) 88, 203, 813, 852
NcoI CCATGG 1 cut(s) 862
NdeII GATC 4 cut(s) 106, 362, 423, 552
NlaIII CATG 8 cut(s) 779, 793, 799, 844, 850, 866, 919, 938
NmeAIII GCCGAG 3 cut(s) 131, 392, 516
NmuCI GTSAC 1 cut(s) 761
NspI RCATGY 3 cut(s) 793, 850, 938
PaeI GCATGC 1 cut(s) 850
PaeR7I CTCGAG 1 cut(s) 609
PciI ACATGT 1 cut(s) 934
PcsI WCGNNNNNNNCGW 4 cut(s) 173, 288, 377, 881
PfeI GAWTC 2 cut(s) 133, 368
PflFI GACNNNGTC 1 cut(s) 220
PleI GAGTC 8 cut(s) 106, 220, 404, 601, 709, 738, 748, 880
PpsI GAGTC 8 cut(s) 106, 220, 404, 601, 709, 738, 748, 880
PscI ACATGT 1 cut(s) 934
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 546
PspGI CCWGG 1 cut(s) 546
PspOMI GGGCCC 2 cut(s) 240, 682
PspPI GGNCC 6 cut(s) 240, 241, 504, 541, 682, 683
PsrI GAACNNNNNNTAC 2 cut(s) 851, 883
PstNI CAGNNNCTG 1 cut(s) 670
PsuI RGATCY 1 cut(s) 362
PsyI GACNNNGTC 1 cut(s) 220
PvuII CAGCTG 2 cut(s) 514, 586
RsaI GTAC 4 cut(s) 29, 641, 860, 926
RsaNI GTAC 4 cut(s) 28, 640, 859, 925
RseI CAYNNNNRTG 3 cut(s) 780, 794, 845
SacI GAGCTC 1 cut(s) 348
SalI GTCGAC 1 cut(s) 223
Sau3AI GATC 4 cut(s) 106, 362, 423, 552
Sau96I GGNCC 6 cut(s) 240, 241, 504, 541, 682, 683
SchI GAGTC 8 cut(s) 106, 220, 404, 601, 709, 739, 749, 881
ScrFI CCNGG 5 cut(s) 88, 203, 548, 813, 852
SduI GDGCHC 3 cut(s) 244, 348, 686
SfaNI GCATC 3 cut(s) 651, 885, 886
Sfr274I CTCGAG 1 cut(s) 609
SinI GGWCC 1 cut(s) 504
SlaI CTCGAG 1 cut(s) 609
SmiMI CAYNNNNRTG 3 cut(s) 780, 794, 845
SmlI CTYRAG 1 cut(s) 609
SmoI CTYRAG 1 cut(s) 609
SphI GCATGC 1 cut(s) 850
Sse9I AATT 1 cut(s) 430
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 5 cut(s) 86, 201, 546, 811, 850
StyI CCWWGG 1 cut(s) 862
TaaI ACNGT 2 cut(s) 220, 906
TaiI ACGT 3 cut(s) 188, 537, 597
TaqI TCGA 9 cut(s) 141, 224, 263, 371, 380, 426, 610, 713, 870
TasI AATT 1 cut(s) 430
TauI GCSGC 9 cut(s) 42, 48, 51, 237, 357, 444, 490, 727, 811
TfiI GAWTC 2 cut(s) 133, 368
TseFI GTSAC 1 cut(s) 761
TseI GCWGC 5 cut(s) 42, 511, 514, 583, 898
Tsp45I GTSAC 1 cut(s) 761
TspDTI ATGAA 1 cut(s) 605
TspGWI ACGGA 3 cut(s) 84, 356, 780
Tth111I GACNNNGTC 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 504
XapI RAATTY 1 cut(s) 430
XceI RCATGY 3 cut(s) 793, 850, 938
XhoI CTCGAG 1 cut(s) 609
XmiI GTMKAC 3 cut(s) 224, 531, 733
ZraI GACGTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.