MD03G1086800.v1.1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
7083141 .. 7086245
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1086800.v1.1.491

Sequence Viewer

Length: 987 bp
ATGGGTGAGGAGGTAAGGATGAGTGAGTACGAAGGCGCTGGTAGCGGCGGCGACGACGAGGCGCGGGTTTCAGAGTGGGAGGCGGGGCTGCCGAGCGCTGATGATTTGACTCCGTTATCCCAGCCGTTGATTCCGATCGAATTAGCCTCGGCCTTCAGCATCTCGCCGGAGACCTGCCACACGGCCTTCGACGTCAACCGCGCGTCGCATAAGACGGTCTCGACGCTCCGCGGCGGCGCCCACTCCCAAGGGTTCTCGTCGTCGAACTACAAGTCGTTCGACGAGAACCGCAGCGACGACGTGGTGGAGCCGATGGTCGTGGAGGTGGACGAGAGCGGCGAGAGGTACGGATCCGATTCGAGAAAGTCGCGGAAGGTCGATTGCAGTACGGAGGAGGCGGATTCGGCGCTGAGGACCGAGAATTTCTCGCCGGACGACATGTCAGCACGGACGCTGAAGCGGCCGCGGCTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTGGAAGTGGTGGCCCACCTGGGGATCAAGAACGCGGTGCCCAAGACGATTATGCAGCTGATGAACGTCGAGGGATTGACACGCGAAAACGTCGCCAGCCACCTGCAGAAGTACCGCCTCTACTTGAAGAGGATGCAGGGCTTATCCGGCGACGTGGGGTCCTCCTCGTCGGACCAGCTTTTCGCCACCACGCCGGTACCGCAGAGCTTACGCCACGAGTCTGGCGGTGGCGGCGGTGGCGCTGGGGGCTCGGGTCAGGCGGGTCAGGGTCAGAGCCACGGGCACGCAAATGGGCAGTTTTCGTTTCCGATGCCGTACCCGCCTGCCGGGATGATGCAGATGCCGGTCCTCGGGATGAACCACGGGCACATGGGCATGCCAGGCGGTGCGGGCGGTCACGGCGGTGGGTACCATGGGTTCGAGTCGCACCACTACAACATGGGTTCGATGGTTTCGTACCAACATGCTGGTTCTAATGACAAATGA

Protein Analysis

329

Amino Acids

35.13

Weight (kDa)

5.78

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 157 - 206 1.6e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 612
AatII GACGTC 1 cut(s) 195
Acc36I ACCTGC 2 cut(s) 182, 612
Acc65I GGTACC 2 cut(s) 697, 909
AccB1I GGYRCC 4 cut(s) 236, 538, 697, 909
AccBSI CCGCTC 1 cut(s) 336
AccII CGCG 8 cut(s) 64, 201, 203, 231, 370, 466, 536, 585
AclWI GGATC 3 cut(s) 345, 358, 533
AcoI YGGCCR 1 cut(s) 461
AcsI RAATTY 1 cut(s) 421
AcuI CTGAAG 2 cut(s) 139, 476
AcyI GRCGYC 2 cut(s) 192, 237
AfaI GTAC 8 cut(s) 29, 347, 388, 614, 699, 818, 911, 959
AfeI AGCGCT 1 cut(s) 97
AfiI CCNNNNNNNGG 3 cut(s) 522, 827, 851
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 1 cut(s) 628
AhdI GACNNNNNGTC 2 cut(s) 439, 658
AjiI CACGTC 2 cut(s) 301, 655
AjnI CCWGG 2 cut(s) 519, 880
AleI CACNNNNGTG 1 cut(s) 903
AluBI AGCT 4 cut(s) 487, 559, 679, 708
AluI AGCT 4 cut(s) 487, 559, 679, 708
Alw26I GTCTC 2 cut(s) 164, 223
AlwI GGATC 3 cut(s) 345, 358, 533
Ama87I CYCGRG 2 cut(s) 751, 851
Aor51HI AGCGCT 1 cut(s) 97
AoxI GGCC 4 cut(s) 150, 183, 461, 513
ApeKI GCWGC 5 cut(s) 88, 291, 484, 487, 556
ApoI RAATTY 1 cut(s) 421
ArsI GACNNNNNNTTYG 4 cut(s) 257, 289, 665, 697
Asp718I GGTACC 2 cut(s) 697, 909
AspLEI GCGC 7 cut(s) 38, 64, 98, 203, 239, 409, 743
AspS9I GGNCC 6 cut(s) 414, 477, 514, 660, 673, 847
AsuC2I CCSGG 1 cut(s) 829
AsuHPI GGTGA 1 cut(s) 17
AvaI CYCGRG 2 cut(s) 751, 851
AvaII GGWCC 5 cut(s) 414, 477, 660, 673, 847
BaeGI GKGCMC 3 cut(s) 543, 786, 870
BaeI ACNNNNGTAYC 2 cut(s) 681, 714
BamHI GGATCC 1 cut(s) 350
BanI GGYRCC 4 cut(s) 236, 538, 697, 909
BanII GRGCYC 1 cut(s) 752
BauI CACGAG 1 cut(s) 716
BbvCI CCTCAGC 1 cut(s) 410
BbvI GCAGC 5 cut(s) 75, 303, 474, 496, 568
BccI CCATC 2 cut(s) 307, 943
BceAI ACGGC 4 cut(s) 109, 198, 799, 916
BciT130I CCWGG 2 cut(s) 521, 882
BcnI CCSGG 1 cut(s) 829
BcoDI GTCTC 2 cut(s) 164, 223
BfmI CTRYAG 1 cut(s) 605
BfoI RGCGCY 5 cut(s) 39, 99, 240, 410, 744
BfuAI ACCTGC 2 cut(s) 182, 612
Bme1390I CCNGG 3 cut(s) 521, 829, 882
Bme18I GGWCC 5 cut(s) 414, 477, 660, 673, 847
BmeRI GACNNNNNGTC 2 cut(s) 439, 658
BmeT110I CYCGRG 2 cut(s) 751, 851
BmgBI CACGTC 2 cut(s) 301, 655
BmgT120I GGNCC 6 cut(s) 414, 477, 514, 660, 673, 847
BmiI GGNNCC 8 cut(s) 238, 309, 352, 479, 540, 661, 699, 911
BmrFI CCNGG 3 cut(s) 521, 829, 882
BmsI GCATC 5 cut(s) 168, 624, 801, 825, 831
BplI GAGNNNNNCTC 2 cut(s) 410, 442
Bpu10I CCTNAGC 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 829
BsaBI GATNNNNATC 1 cut(s) 134
BsaHI GRCGYC 2 cut(s) 192, 237
BsaI GGTCTC 2 cut(s) 164, 223
BsaJI CCNNGG 9 cut(s) 147, 229, 247, 464, 520, 778, 850, 862, 913
Bsc4I CCNNNNNNNGG 3 cut(s) 522, 827, 851
Bse118I RCCGGY 2 cut(s) 694, 844
Bse8I GATNNNNATC 1 cut(s) 134
BseBI CCWGG 2 cut(s) 521, 882
BseDI CCNNGG 9 cut(s) 147, 229, 247, 464, 520, 778, 850, 862, 913
BseGI GGATG 4 cut(s) 24, 639, 837, 861
BseJI GATNNNNATC 1 cut(s) 134
BseLI CCNNNNNNNGG 3 cut(s) 522, 827, 851
BseMII CTCAG 1 cut(s) 401
BseRI GAGGAG 3 cut(s) 23, 407, 655
BseSI GKGCMC 3 cut(s) 543, 786, 870
BseX3I CGGCCG 1 cut(s) 461
BseXI GCAGC 5 cut(s) 75, 303, 474, 496, 568
BseYI CCCAGC 2 cut(s) 120, 743
BsgI GTGCAG 1 cut(s) 473
Bsh1236I CGCG 8 cut(s) 64, 201, 203, 231, 370, 466, 536, 585
Bsh1285I CGRYCG 2 cut(s) 138, 464
BshFI GGCC 4 cut(s) 152, 185, 463, 515
BshNI GGYRCC 4 cut(s) 236, 538, 697, 909
BsiEI CGRYCG 2 cut(s) 138, 464
BsiHKCI CYCGRG 2 cut(s) 751, 851
BsiSI CCGG 6 cut(s) 167, 431, 648, 695, 828, 845
BslI CCNNNNNNNGG 3 cut(s) 522, 827, 851
BsmAI GTCTC 2 cut(s) 164, 223
BsnI GGCC 4 cut(s) 152, 185, 463, 515
Bso31I GGTCTC 2 cut(s) 164, 223
BsoBI CYCGRG 2 cut(s) 751, 851
Bsp1286I GDGCHC 4 cut(s) 543, 752, 786, 870
Bsp143I GATC 3 cut(s) 135, 350, 525
Bsp19I CCATGG 1 cut(s) 913
BspANI GGCC 4 cut(s) 152, 185, 463, 515
BspCNI CTCAG 1 cut(s) 402
BspFNI CGCG 8 cut(s) 64, 201, 203, 231, 370, 466, 536, 585
BspLI GGNNCC 8 cut(s) 238, 309, 352, 479, 540, 661, 699, 911
BspMAI CTGCAG 1 cut(s) 609
BspMI ACCTGC 2 cut(s) 182, 612
BspPI GGATC 3 cut(s) 345, 358, 533
BspT107I GGYRCC 4 cut(s) 236, 538, 697, 909
BspTNI GGTCTC 2 cut(s) 164, 223
BsrBI CCGCTC 1 cut(s) 336
BsrFI RCCGGY 2 cut(s) 694, 844
BssAI RCCGGY 2 cut(s) 694, 844
BssECI CCNNGG 9 cut(s) 147, 229, 247, 464, 520, 778, 850, 862, 913
BssMI GATC 3 cut(s) 135, 350, 525
BssNI GRCGYC 2 cut(s) 192, 237
BssSI CACGAG 1 cut(s) 716
BssT1I CCWWGG 2 cut(s) 247, 913
Bst2BI CACGAG 1 cut(s) 716
Bst2UI CCWGG 2 cut(s) 521, 882
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 623
BstACI GRCGYC 2 cut(s) 192, 237
BstC8I GCNNGC 5 cut(s) 598, 786, 825, 878, 892
BstDEI CTNAG 1 cut(s) 410
BstDSI CCRYGG 5 cut(s) 229, 464, 778, 862, 913
BstF5I GGATG 4 cut(s) 24, 639, 837, 861
BstFNI CGCG 8 cut(s) 64, 201, 203, 231, 370, 466, 536, 585
BstH2I RGCGCY 5 cut(s) 39, 99, 240, 410, 744
BstHHI GCGC 7 cut(s) 38, 64, 98, 203, 239, 409, 743
BstKTI GATC 3 cut(s) 138, 353, 528
BstMAI GTCTC 2 cut(s) 164, 223
BstMBI GATC 3 cut(s) 135, 350, 525
BstMCI CGRYCG 2 cut(s) 138, 464
BstNI CCWGG 2 cut(s) 521, 882
BstNSI RCATGY 3 cut(s) 442, 880, 968
BstSCI CCNGG 3 cut(s) 519, 827, 880
BstSFI CTRYAG 1 cut(s) 605
BstSLI GKGCMC 3 cut(s) 543, 786, 870
BstUI CGCG 8 cut(s) 64, 201, 203, 231, 370, 466, 536, 585
BstV1I GCAGC 5 cut(s) 75, 303, 474, 496, 568
BstX2I RGATCY 1 cut(s) 350
BstXI CCANNNNNNTGG 2 cut(s) 722, 968
BstYI RGATCY 1 cut(s) 350
BstZI CGGCCG 1 cut(s) 461
BsuRI GGCC 4 cut(s) 152, 185, 463, 515
BtgI CCRYGG 5 cut(s) 229, 464, 778, 862, 913
BtrI CACGTC 2 cut(s) 301, 655
BtsCI GGATG 4 cut(s) 24, 639, 837, 861
BveI ACCTGC 2 cut(s) 182, 612
Cac8I GCNNGC 5 cut(s) 598, 786, 825, 878, 892
CciNI GCGGCCGC 1 cut(s) 461
CfoI GCGC 7 cut(s) 38, 64, 98, 203, 239, 409, 743
Cfr10I RCCGGY 2 cut(s) 694, 844
Cfr13I GGNCC 6 cut(s) 414, 477, 514, 660, 673, 847
Cfr42I CCGCGG 2 cut(s) 232, 467
CseI GACGC 3 cut(s) 192, 232, 460
Csp6I GTAC 8 cut(s) 28, 346, 387, 613, 698, 817, 910, 958
CviAII CATG 6 cut(s) 439, 871, 877, 914, 940, 965
CviQI GTAC 8 cut(s) 28, 346, 387, 613, 698, 817, 910, 958
DdeI CTNAG 1 cut(s) 410
DinI GGCGCC 1 cut(s) 238
DpnI GATC 3 cut(s) 137, 352, 527
DpnII GATC 3 cut(s) 135, 350, 525
DriI GACNNNNNGTC 2 cut(s) 439, 658
EaeI YGGCCR 1 cut(s) 461
EagI CGGCCG 1 cut(s) 461
Eam1104I CTCTTC 1 cut(s) 623
Eam1105I GACNNNNNGTC 2 cut(s) 439, 658
EarI CTCTTC 1 cut(s) 623
EciI GGCGGA 1 cut(s) 413
EclXI CGGCCG 1 cut(s) 461
Eco130I CCWWGG 2 cut(s) 247, 913
Eco24I GRGCYC 1 cut(s) 752
Eco31I GGTCTC 2 cut(s) 164, 223
Eco47I GGWCC 5 cut(s) 414, 477, 660, 673, 847
Eco47III AGCGCT 1 cut(s) 97
Eco52I CGGCCG 1 cut(s) 461
Eco57I CTGAAG 2 cut(s) 139, 476
Eco88I CYCGRG 2 cut(s) 751, 851
EcoO109I RGGNCCY 1 cut(s) 660
EcoRII CCWGG 2 cut(s) 519, 880
EcoT14I CCWWGG 2 cut(s) 247, 913
EcoT38I GRGCYC 1 cut(s) 752
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 247, 913
FaeI CATG 6 cut(s) 442, 874, 880, 917, 943, 968
FaiI YATR 8 cut(s) 210, 440, 554, 872, 878, 915, 941, 966
FatI CATG 6 cut(s) 438, 870, 876, 913, 939, 964
FauI CCCGC 6 cut(s) 57, 76, 489, 754, 828, 883
FokI GGATG 4 cut(s) 31, 646, 844, 868
FriOI GRGCYC 1 cut(s) 752
GlaI GCGC 7 cut(s) 37, 63, 97, 202, 238, 408, 742
GsaI CCCAGC 2 cut(s) 124, 747
HaeII RGCGCY 5 cut(s) 39, 99, 240, 410, 744
HaeIII GGCC 4 cut(s) 152, 185, 463, 515
HapII CCGG 6 cut(s) 167, 431, 648, 695, 828, 845
HgaI GACGC 3 cut(s) 192, 232, 460
HhaI GCGC 7 cut(s) 38, 64, 98, 203, 239, 409, 743
Hin1I GRCGYC 2 cut(s) 192, 237
Hin1II CATG 6 cut(s) 442, 874, 880, 917, 943, 968
Hin6I GCGC 7 cut(s) 36, 62, 96, 201, 237, 407, 741
HinP1I GCGC 7 cut(s) 36, 62, 96, 201, 237, 407, 741
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 6 cut(s) 109, 130, 356, 401, 719, 923
HpaII CCGG 6 cut(s) 167, 431, 648, 695, 828, 845
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 3 cut(s) 196, 328, 477
Hpy188I TCNGA 6 cut(s) 73, 135, 355, 673, 774, 810
Hpy188III TCNNGA 4 cut(s) 220, 360, 529, 853
Hpy8I GTNNAC 3 cut(s) 196, 328, 477
HpyAV CCTTC 4 cut(s) 26, 163, 196, 367
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 5 cut(s) 192, 300, 567, 591, 654
HpyCH4V TGCA 6 cut(s) 384, 490, 556, 607, 637, 838
HpyF3I CTNAG 1 cut(s) 410
HpySE526I ACGT 5 cut(s) 192, 300, 567, 591, 654
Hsp92I GRCGYC 2 cut(s) 192, 237
Hsp92II CATG 6 cut(s) 442, 874, 880, 917, 943, 968
HspAI GCGC 7 cut(s) 36, 62, 96, 201, 237, 407, 741
KasI GGCGCC 1 cut(s) 236
KpnI GGTACC 2 cut(s) 701, 913
KspI CCGCGG 2 cut(s) 232, 467
Kzo9I GATC 3 cut(s) 135, 350, 525
LmnI GCTCC 2 cut(s) 231, 307
Lsp1109I GCAGC 5 cut(s) 75, 303, 474, 496, 568
LweI GCATC 5 cut(s) 168, 624, 801, 825, 831
MaeII ACGT 5 cut(s) 192, 300, 567, 591, 654
MaeIII GTNAC 1 cut(s) 896
MalI GATC 3 cut(s) 137, 352, 527
MbiI CCGCTC 1 cut(s) 336
MboI GATC 3 cut(s) 135, 350, 525
MboII GAAGA 1 cut(s) 640
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 4 cut(s) 543, 752, 786, 870
MluCI AATT 2 cut(s) 140, 421
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 3 cut(s) 103, 728, 932
MmeI TCCRAC 1 cut(s) 651
MslI CAYNNNNRTG 3 cut(s) 789, 875, 903
MspA1I CMGCKG 4 cut(s) 231, 466, 487, 559
MspI CCGG 6 cut(s) 167, 431, 648, 695, 828, 845
MspR9I CCNGG 3 cut(s) 521, 829, 882
MvaI CCWGG 2 cut(s) 521, 882
MvnI CGCG 8 cut(s) 64, 201, 203, 231, 370, 466, 536, 585
NarI GGCGCC 1 cut(s) 237
NciI CCSGG 1 cut(s) 829
NcoI CCATGG 1 cut(s) 913
NdeII GATC 3 cut(s) 135, 350, 525
NlaIII CATG 6 cut(s) 442, 874, 880, 917, 943, 968
NlaIV GGNNCC 8 cut(s) 238, 309, 352, 479, 540, 661, 699, 911
NmeAIII GCCGAG 2 cut(s) 117, 128
NmuCI GTSAC 1 cut(s) 896
NotI GCGGCCGC 1 cut(s) 461
NspI RCATGY 3 cut(s) 442, 880, 968
OliI CACNNNNGTG 1 cut(s) 903
PaeI GCATGC 1 cut(s) 880
PaqCI CACCTGC 1 cut(s) 612
PciI ACATGT 1 cut(s) 438
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 953
PfeI GAWTC 3 cut(s) 130, 356, 401
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 3 cut(s) 103, 727, 931
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 3 cut(s) 103, 727, 931
PpuMI RGGWCCY 1 cut(s) 660
PscI ACATGT 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 660
Psp6I CCWGG 2 cut(s) 519, 880
PspFI CCCAGC 2 cut(s) 120, 743
PspGI CCWGG 2 cut(s) 519, 880
PspN4I GGNNCC 8 cut(s) 238, 309, 352, 479, 540, 661, 699, 911
PspPI GGNCC 6 cut(s) 414, 477, 514, 660, 673, 847
PspPPI RGGWCCY 1 cut(s) 660
PsrI GAACNNNNNNTAC 2 cut(s) 902, 934
PstI CTGCAG 1 cut(s) 609
PsuI RGATCY 1 cut(s) 350
PvuI CGATCG 1 cut(s) 138
PvuII CAGCTG 2 cut(s) 487, 559
RsaI GTAC 8 cut(s) 29, 347, 388, 614, 699, 818, 911, 959
RsaNI GTAC 8 cut(s) 28, 346, 387, 613, 698, 817, 910, 958
RseI CAYNNNNRTG 3 cut(s) 789, 875, 903
SacII CCGCGG 2 cut(s) 232, 467
Sau3AI GATC 3 cut(s) 135, 350, 525
Sau96I GGNCC 6 cut(s) 414, 477, 514, 660, 673, 847
SchI GAGTC 3 cut(s) 103, 728, 932
ScrFI CCNGG 3 cut(s) 521, 829, 882
SduI GDGCHC 4 cut(s) 543, 752, 786, 870
SfaNI GCATC 5 cut(s) 168, 624, 801, 825, 831
SfcI CTRYAG 1 cut(s) 605
SfoI GGCGCC 1 cut(s) 238
Sfr303I CCGCGG 2 cut(s) 232, 467
SgrBI CCGCGG 2 cut(s) 232, 467
SinI GGWCC 5 cut(s) 414, 477, 660, 673, 847
SmiMI CAYNNNNRTG 3 cut(s) 789, 875, 903
SphI GCATGC 1 cut(s) 880
Sse9I AATT 2 cut(s) 140, 421
SspDI GGCGCC 1 cut(s) 236
StyD4I CCNGG 3 cut(s) 519, 827, 880
StyI CCWWGG 2 cut(s) 247, 913
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 5 cut(s) 195, 303, 570, 594, 657
TaqII GACCGA 1 cut(s) 431
TasI AATT 2 cut(s) 140, 421
TauI GCSGC 9 cut(s) 48, 51, 234, 237, 339, 463, 466, 469, 735
TfiI GAWTC 3 cut(s) 130, 356, 401
TseFI GTSAC 1 cut(s) 896
TseI GCWGC 5 cut(s) 88, 291, 484, 487, 556
Tsp45I GTSAC 1 cut(s) 896
TspDTI ATGAA 2 cut(s) 578, 872
TspGWI ACGGA 4 cut(s) 102, 363, 404, 463
VpaK11BI GGWCC 5 cut(s) 414, 477, 660, 673, 847
XapI RAATTY 1 cut(s) 421
XceI RCATGY 3 cut(s) 442, 880, 968
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.