AT5G59830

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007983
Physical Location & Seq
Forward (+)
24105041 .. 24107241
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59830.1

Sequence Viewer

Length: 1278 bp
ATGTCATATGAAAGCAAAGGTTTTTGGGTTATGAAGAATAATGAGCATACAAGTGAGGAAGATTCAGTGTATGATCATTCAACAAGAGATGATTCAAAGCGTCCTCATCCTTGGTTTGTTGATTCTTCTCGTTCAGAGATGTTCCCAAACAAGAAACAAGCTGTGCAAGATCCTGTTGTAGGATTAGGAAAATCAAATGTTGGTCTTCCTTTGTGGGAAAGCTCATCGGTTTTTCAGTCTGTTTCTAACCAGTTTATGGATCGGCTTCTAGGAGCTGAAATGCCTCCAAGACCTCTTTTGTTTGGTGATAGAGATAGAACGGAAGGTTGTAGCCACCACCACCAGAATAAGAGTATAGCTGAGAGTTATATGGAAGATACATCTGTTGAATTGTCGATATCTAATGGCGTGGAGGTTGCTGGGGGTTGTTTTGGTGGTGATGGAAATAGAAAACTTCCGGTTAGTCGGGTTAAGGAAACGATGAGTACACATGTTGCTTTAGAAGGTCATAGTCAAAGGAAAATCGAGTCGTCTTCGATACAAGCTTGTAGCCGGGAAAACGAAAGTAGCTATATAAATTTTGCACTAGCGGGTCATCCCTATGGCAATGAGGACTCTCAGGGGATCACATTTGGTGAAATAAACGATGAACATGGTGTTGGCTCTACTTCCAATGTGGTTGGAAACTATCAATCATATGTTCAAGACCCAATTGGAACATTGGATATTGTTTATGACCAAGAAACTGGGAGTTCACAAACCAGCAGCGGAGTTGTAAGCGAACAACAAGTTGCTAAACCGAGTTTAGGATCACTTCCAAAGACCAAAGCAGAGGCCAAGTCATCAAAGAAGGAAGCTTCCACAAGCTTTCCTTCAAACGTCAGAAGCTTAATATCAACCGGTATGCTCGATGGTGTTCCTGTGAAGTATGTTTCTGTCTCACGTGAGGAGCTTCGAGGAGTCATCAAAGGATCGGGTTATCTCTGCGGATGTCAAACTTGCGATTTCACAAAGGTGCTTAACGCGTATGCATTCGAGAGGCACGCTGGATGTAAAACAAAGCATCCAAACAATCATATTTACTTTGAAAACGGGAAGACGATTTATCAGATAGTTCAGGAACTGAGGAACACTCCAGAGAGCATACTGTTTGATGTGATTCAGACTGTATTTGGTTCTCCTATCAACCAGAAAGCATTTCGCATATGGAAAGAATCATTCCAAGCGGCGACTAGAGAACTTCAGCGGATCTATGGCAAAGAAGAGCGTTCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

425

Amino Acids

47.09

Weight (kDa)

5.94

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 320 - 375 1.7e-15 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 256
AccII CGCG 1 cut(s) 1025
AciI CCGC 5 cut(s) 590, 768, 987, 1226, 1246
AclWI GGATC 6 cut(s) 164, 267, 632, 817, 979, 1256
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 1226
AcvI CACGTG 1 cut(s) 944
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 3 cut(s) 179, 256, 806
AflIII ACRYGT 2 cut(s) 490, 1023
AgeI ACCGGT 1 cut(s) 899
AgsI TTSAA 6 cut(s) 81, 96, 389, 704, 876, 1088
AjuI GAANNNNNNNTTGG 2 cut(s) 642, 674
AleI CACNNNNGTG 1 cut(s) 1013
Alw26I GTCTC 1 cut(s) 943
AlwI GGATC 6 cut(s) 164, 267, 632, 817, 979, 1256
AlwNI CAGNNNCTG 1 cut(s) 1123
AoxI GGCC 1 cut(s) 834
ApeKI GCWGC 1 cut(s) 765
ApoI RAATTY 1 cut(s) 577
AsiGI ACCGGT 1 cut(s) 899
AsuC2I CCSGG 1 cut(s) 554
AsuHPI GGTGA 3 cut(s) 317, 449, 647
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BbrPI CACGTG 1 cut(s) 944
BbsI GAAGAC 3 cut(s) 197, 525, 1103
BbvI GCAGC 1 cut(s) 777
BccI CCATC 2 cut(s) 434, 905
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 554
BcoDI GTCTC 1 cut(s) 943
BfaI CTAG 3 cut(s) 269, 587, 1233
BisI GCNGC 2 cut(s) 766, 1227
BlsI GCNGC 2 cut(s) 767, 1228
Bme1390I CCNGG 1 cut(s) 554
BmrFI CCNGG 1 cut(s) 554
BmrI ACTGGG 1 cut(s) 756
BmsI GCATC 1 cut(s) 1072
BmuI ACTGGG 1 cut(s) 756
BpiI GAAGAC 3 cut(s) 197, 525, 1103
BplI GAGNNNNNCTC 2 cut(s) 1117, 1149
BpmI CTGGAG 1 cut(s) 1119
BpuMI CCSGG 1 cut(s) 554
BsaAI YACGTR 1 cut(s) 944
BsaJI CCNNGG 1 cut(s) 110
BsaWI WCCGGW 2 cut(s) 457, 899
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 256, 806
Bse118I RCCGGY 1 cut(s) 899
Bse1I ACTGG 2 cut(s) 250, 751
Bse3DI GCAATG 1 cut(s) 613
BseDI CCNNGG 1 cut(s) 110
BseGI GGATG 5 cut(s) 106, 595, 995, 1055, 1063
BseLI CCNNNNNNNGG 3 cut(s) 179, 256, 806
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 3 cut(s) 351, 632, 1115
BseNI ACTGG 2 cut(s) 250, 751
BseRI GAGGAG 2 cut(s) 962, 972
BseXI GCAGC 1 cut(s) 777
BseYI CCCAGC 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 1025
BshFI GGCC 1 cut(s) 836
BshTI ACCGGT 1 cut(s) 899
BsiSI CCGG 3 cut(s) 458, 553, 900
BslI CCNNNNNNNGG 3 cut(s) 179, 256, 806
BsmAI GTCTC 1 cut(s) 943
BsmI GAATGC 1 cut(s) 1031
BsnI GGCC 1 cut(s) 836
Bsp143I GATC 7 cut(s) 73, 169, 259, 624, 809, 971, 1248
BspACI CCGC 5 cut(s) 590, 768, 987, 1226, 1246
BspANI GGCC 1 cut(s) 836
BspCNI CTCAG 3 cut(s) 352, 631, 1116
BspFNI CGCG 1 cut(s) 1025
BspPI GGATC 6 cut(s) 164, 267, 632, 817, 979, 1256
BspQI GCTCTTC 1 cut(s) 1257
BsrDI GCAATG 1 cut(s) 613
BsrFI RCCGGY 1 cut(s) 899
BsrI ACTGG 2 cut(s) 250, 751
BssAI RCCGGY 1 cut(s) 899
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 7 cut(s) 73, 169, 259, 624, 809, 971, 1248
BssT1I CCWWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 1149, 1168
Bst6I CTCTTC 1 cut(s) 1257
BstBAI YACGTR 1 cut(s) 944
BstC8I GCNNGC 1 cut(s) 1044
BstDEI CTNAG 3 cut(s) 360, 618, 1124
BstENI CCTNNNNNAGG 1 cut(s) 177
BstF5I GGATG 5 cut(s) 106, 595, 995, 1055, 1063
BstFNI CGCG 1 cut(s) 1025
BstKTI GATC 7 cut(s) 76, 172, 262, 627, 812, 974, 1251
BstMAI GTCTC 1 cut(s) 943
BstMBI GATC 7 cut(s) 73, 169, 259, 624, 809, 971, 1248
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 552
BstUI CGCG 1 cut(s) 1025
BstV1I GCAGC 1 cut(s) 777
BstV2I GAAGAC 3 cut(s) 197, 525, 1103
BstX2I RGATCY 2 cut(s) 169, 1248
BstXI CCANNNNNNTGG 1 cut(s) 746
BstYI RGATCY 2 cut(s) 169, 1248
BsuRI GGCC 1 cut(s) 836
BtsCI GGATG 5 cut(s) 106, 595, 995, 1055, 1063
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 1044
CaiI CAGNNNCTG 1 cut(s) 1123
Cfr10I RCCGGY 1 cut(s) 899
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 486
CspAI ACCGGT 1 cut(s) 899
CviAII CATG 2 cut(s) 491, 653
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 3 cut(s) 360, 618, 1124
DpnI GATC 7 cut(s) 75, 171, 261, 626, 811, 973, 1250
DpnII GATC 7 cut(s) 73, 169, 259, 624, 809, 971, 1248
Eam1104I CTCTTC 1 cut(s) 1257
EarI CTCTTC 1 cut(s) 1257
Eco130I CCWWGG 1 cut(s) 110
Eco32I GATATC 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 1226
Eco72I CACGTG 1 cut(s) 944
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRV GATATC 1 cut(s) 399
EcoT14I CCWWGG 1 cut(s) 110
EcoT22I ATGCAT 1 cut(s) 1033
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 2 cut(s) 494, 656
FalI AAGNNNNNCTT 2 cut(s) 856, 888
FatI CATG 2 cut(s) 490, 652
FauI CCCGC 1 cut(s) 583
FauNDI CATATG 3 cut(s) 7, 697, 1205
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 766, 1227
FokI GGATG 5 cut(s) 93, 582, 1002, 1050, 1062
Fsp4HI GCNGC 2 cut(s) 766, 1227
FspBI CTAG 3 cut(s) 269, 587, 1233
GluI GCNGC 2 cut(s) 766, 1227
GsaI CCCAGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 1119
HaeIII GGCC 1 cut(s) 836
HapII CCGG 3 cut(s) 458, 553, 900
HgaI GACGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 494, 656
HindIII AAGCTT 4 cut(s) 543, 855, 865, 886
HinfI GANTC 8 cut(s) 62, 92, 122, 527, 614, 960, 1159, 1214
HpaII CCGG 3 cut(s) 458, 553, 900
HphI GGTGA 3 cut(s) 317, 449, 647
Hpy166II GTNNAC 2 cut(s) 488, 755
Hpy188I TCNGA 5 cut(s) 136, 884, 1110, 1164, 1277
Hpy188III TCNNGA 4 cut(s) 704, 1036, 1118, 1136
Hpy8I GTNNAC 2 cut(s) 488, 755
HpyAV CCTTC 4 cut(s) 317, 497, 844, 882
HpyCH4III ACNGT 2 cut(s) 1149, 1168
HpyCH4IV ACGT 2 cut(s) 879, 943
HpyCH4V TGCA 3 cut(s) 166, 584, 1031
HpyF3I CTNAG 3 cut(s) 360, 618, 1124
HpySE526I ACGT 2 cut(s) 879, 943
Hsp92II CATG 2 cut(s) 494, 656
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 7 cut(s) 73, 169, 259, 624, 809, 971, 1248
LguI GCTCTTC 1 cut(s) 1257
LmnI GCTCC 2 cut(s) 272, 949
Lsp1109I GCAGC 1 cut(s) 777
LweI GCATC 1 cut(s) 1072
MaeI CTAG 3 cut(s) 269, 587, 1233
MaeII ACGT 2 cut(s) 879, 943
MalI GATC 7 cut(s) 75, 171, 261, 626, 811, 973, 1250
MboI GATC 7 cut(s) 73, 169, 259, 624, 809, 971, 1248
MboII GAAGA 8 cut(s) 46, 71, 117, 197, 386, 525, 1108, 1274
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 2 cut(s) 169, 1248
MluCI AATT 3 cut(s) 389, 577, 711
MluI ACGCGT 1 cut(s) 1023
MlyI GAGTC 3 cut(s) 536, 608, 969
MmeI TCCRAC 1 cut(s) 661
Mph1103I ATGCAT 1 cut(s) 1033
MseI TTAA 3 cut(s) 471, 890, 1020
MslI CAYNNNNRTG 3 cut(s) 51, 600, 1013
MspA1I CMGCKG 2 cut(s) 768, 1246
MspI CCGG 3 cut(s) 458, 553, 900
MspR9I CCNGG 1 cut(s) 554
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 1 cut(s) 1031
MvnI CGCG 1 cut(s) 1025
NciI CCSGG 1 cut(s) 554
NdeI CATATG 3 cut(s) 7, 697, 1205
NdeII GATC 7 cut(s) 73, 169, 259, 624, 809, 971, 1248
NlaIII CATG 2 cut(s) 494, 656
NsiI ATGCAT 1 cut(s) 1033
NspI RCATGY 1 cut(s) 494
OliI CACNNNNGTG 1 cut(s) 1013
PciI ACATGT 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 1257
PctI GAATGC 1 cut(s) 1031
PfeI GAWTC 5 cut(s) 62, 92, 122, 1159, 1214
PflMI CCANNNNNTGG 1 cut(s) 256
PinAI ACCGGT 1 cut(s) 899
PkrI GCNGC 2 cut(s) 767, 1228
PleI GAGTC 3 cut(s) 535, 608, 968
PmaCI CACGTG 1 cut(s) 944
PmlI CACGTG 1 cut(s) 944
PpsI GAGTC 3 cut(s) 535, 608, 968
Ppu21I YACGTR 1 cut(s) 944
PscI ACATGT 1 cut(s) 490
PspCI CACGTG 1 cut(s) 944
PspFI CCCAGC 1 cut(s) 419
PstNI CAGNNNCTG 1 cut(s) 1123
PsuI RGATCY 2 cut(s) 169, 1248
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
RseI CAYNNNNRTG 3 cut(s) 51, 600, 1013
SapI GCTCTTC 1 cut(s) 1257
SaqAI TTAA 3 cut(s) 471, 890, 1020
SatI GCNGC 2 cut(s) 766, 1227
Sau3AI GATC 7 cut(s) 73, 169, 259, 624, 809, 971, 1248
SchI GAGTC 3 cut(s) 536, 608, 969
ScrFI CCNGG 1 cut(s) 554
SfaNI GCATC 1 cut(s) 1072
SmiMI CAYNNNNRTG 3 cut(s) 51, 600, 1013
Sse9I AATT 3 cut(s) 389, 577, 711
SsiI CCGC 5 cut(s) 590, 768, 987, 1226, 1246
SspMI CTAG 3 cut(s) 269, 587, 1233
StyD4I CCNGG 1 cut(s) 552
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 2 cut(s) 1149, 1168
TaiI ACGT 2 cut(s) 882, 946
TaqI TCGA 6 cut(s) 395, 525, 536, 909, 955, 1035
TasI AATT 3 cut(s) 389, 577, 711
TatI WGTACW 1 cut(s) 485
TauI GCSGC 1 cut(s) 1229
TfiI GAWTC 5 cut(s) 62, 92, 122, 1159, 1214
Tru1I TTAA 3 cut(s) 471, 890, 1020
Tru9I TTAA 3 cut(s) 471, 890, 1020
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 765
TspDTI ATGAA 3 cut(s) 24, 47, 663
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 1 cut(s) 72
Van91I CCANNNNNTGG 1 cut(s) 256
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 1 cut(s) 577
XceI RCATGY 1 cut(s) 494
XspI CTAG 3 cut(s) 269, 587, 1233
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.