Rw5G038960

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007983
Physical Location & Seq
Forward (+)
68896156 .. 68899042
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G038960.1

Sequence Viewer

Length: 1518 bp
ATGTCGTTTCAGAACAAGGGTTTTTGGATGGCAAAGGGTGCAGGACATGAAAATGATCGAGATGCAACTTTTGGTAGCCCTTCAAGAATTGAACCAAAGCGGTCTCACCAATGGTTTGTAGATTCTGCTGAACCCCAGATTTTCCCCAACAAAAAGCAAGCAGTACATATTCCAAACAGCAAACTGAGCACGGATATGCCCAATGAAAATGTCTCTTGGGAGAATCCTTCCAGCTTTCAGTCGGTTCCCCATCAATTTATTGACCGGTTATTTGGATCGGATACAGCAAGCTCTGCCAACTTTTCAGACAGGAACGTGTCTCCTGTTGGATCAGATGATTGGAGCACAAGAACAAAGGGTATTGATGACCAGTTCGGAGAAGATGCTGCGGTAAATTTGTCCATATCTCATGCTATTGAAGATCCTGAAGTATGTCTTGGCTTTGCTGGGATTAGGAAAATCAAAGTCAACCAGGTTAAGGACAGCGACAATGGCATGCATGCATCAAGGGAACATGGTTCTAGCAGGGAATATAACAGTAACCTGCCAACAAGTCAGGCATTTGACAGGACACACGAAACCAGTTTCATATCAGCAGGGCAGGCATATGATAAGGAGCATGGTAATGTCACACTAATGGGTCATGCCTACAACCAGGGAGCTGCCCATGTTAGACCTTTAGGTCCCAACTATGGCAAGAGGGAAGAAAATGTGATATCAATGGGTGATGGTTACAGTAAAGGTAATGCCAATATGATATCTTTTGGCGGGTTTCCTGACGAACAAGATATGAACACCATGGGCAGGGCTGTTGCAAACTATGATCAATTATACCATCAGTCTTCTGTACAAACACCAGAAACTGCGAATGAGAAAGAATTGGATGCAACAAATGTCAATGCAGTTGATAATACTGCTTCTGTAGCTAAATCAAGACCAGAATCAGCTTCCAAGAGTAAACCAGAGATCAAACCAATAAAGAAACAAGCTCCAAACAGCTTCCCCTCTAATGTTAGAAGCTTGATTTCAACTGGCATCTTAGATGGCGTTCCTGTAAAGTATGTCTCCATGGCACGAGAGGAACTTCGCGGAATTATAAAGGGTTCCAGCTATCTTTGCGGCTGTCAATCATGTAACTTTACCAAGGGGCTAAATGCTTATGAATTTGAGCGGCATGCTGGTTGCAAAACAAAACATCCAAACAATCACATATACTTTGACAATGGGAAGACCATCTATCAGATAGTACAGGAATTAAGGAGCACCCCTGAAAGCTTGTTATTCGATACAATGCAAACAGTCTTTGGCGCTCCGATCAATCAGAAAGCTTTTCTCAGTTGGAAAGGTAATAAATCTGTTTTCCCATCTTCTTTCCCTGGCTTCATACATGAATTGGCTCCAGCAGCATCCAAGTTATCTTCATTGCTTATTGAACTGATATTCTATTCCTCAGAATCCTTTCAAGCAGCAACTCGTGAACTTCAGCGCATTTACGGAAAGGAGGAACTGAACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

505

Amino Acids

55.81

Weight (kDa)

6.26

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 364 - 419 4.6e-13 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1097
AasI GACNNNNNNGTC 1 cut(s) 681
Acc36I ACCTGC 1 cut(s) 552
AccBSI CCGCTC 1 cut(s) 1171
AccII CGCG 1 cut(s) 1089
AciI CCGC 6 cut(s) 100, 389, 768, 1089, 1119, 1171
AclWI GGATC 3 cut(s) 283, 337, 416
AcsI RAATTY 2 cut(s) 394, 1163
AcuI CTGAAG 2 cut(s) 447, 1466
AfaI GTAC 3 cut(s) 165, 849, 1248
AfiI CCNNNNNNNGG 3 cut(s) 478, 692, 804
AflIII ACRYGT 1 cut(s) 315
AgeI ACCGGT 1 cut(s) 264
AgsI TTSAA 6 cut(s) 84, 92, 419, 1029, 1433, 1463
AjnI CCWGG 3 cut(s) 471, 654, 1375
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
Alw21I GWGCWC 3 cut(s) 191, 347, 1265
Alw26I GTCTC 4 cut(s) 108, 217, 324, 1069
AlwI GGATC 3 cut(s) 283, 337, 416
AlwNI CAGNNNCTG 1 cut(s) 863
ApeKI GCWGC 4 cut(s) 386, 662, 1403, 1466
ApoI RAATTY 2 cut(s) 394, 1163
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AsiGI ACCGGT 1 cut(s) 264
Asp700I GAANNNNTTC 1 cut(s) 1458
AspLEI GCGC 2 cut(s) 1310, 1488
AspS9I GGNCC 1 cut(s) 683
AsuHPI GGTGA 2 cut(s) 98, 737
AvaII GGWCC 1 cut(s) 683
BauI CACGAG 2 cut(s) 1074, 1473
BbsI GAAGAC 2 cut(s) 834, 1235
Bbv12I GWGCWC 3 cut(s) 191, 347, 1265
BbvI GCAGC 4 cut(s) 373, 649, 1415, 1478
BccI CCATC 7 cut(s) 22, 258, 722, 843, 1037, 1241, 1372
BciT130I CCWGG 3 cut(s) 473, 656, 1377
BciVI GTATCC 1 cut(s) 274
BclI TGATCA 1 cut(s) 823
BcoDI GTCTC 4 cut(s) 108, 217, 324, 1069
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 1 cut(s) 921
BfoI RGCGCY 1 cut(s) 1311
BfuAI ACCTGC 1 cut(s) 552
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 6 cut(s) 387, 663, 1120, 1172, 1404, 1467
BlsI GCNGC 6 cut(s) 388, 664, 1121, 1173, 1405, 1468
Bme1390I CCNGG 3 cut(s) 473, 656, 1377
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 1 cut(s) 683
BmiI GGNNCC 4 cut(s) 246, 685, 1105, 1398
BmrFI CCNGG 3 cut(s) 473, 656, 1377
BmsI GCATC 6 cut(s) 52, 373, 512, 874, 1044, 1415
BpiI GAAGAC 2 cut(s) 834, 1235
BpmI CTGGAG 1 cut(s) 1383
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 5 cut(s) 655, 798, 1068, 1143, 1375
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 3 cut(s) 478, 692, 804
Bse118I RCCGGY 1 cut(s) 264
Bse1I ACTGG 3 cut(s) 370, 582, 1036
Bse3DI GCAATG 1 cut(s) 1421
BseBI CCWGG 3 cut(s) 473, 656, 1377
BseDI CCNNGG 5 cut(s) 655, 798, 1068, 1143, 1375
BseGI GGATG 4 cut(s) 33, 889, 1195, 1406
BseLI CCNNNNNNNGG 3 cut(s) 478, 692, 804
BseMI GCAATG 1 cut(s) 1421
BseMII CTCAG 3 cut(s) 176, 1348, 1464
BseNI ACTGG 3 cut(s) 370, 582, 1036
BseXI GCAGC 4 cut(s) 373, 649, 1415, 1478
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 1089
BshTI ACCGGT 1 cut(s) 264
BsiHKAI GWGCWC 3 cut(s) 191, 347, 1265
BsiSI CCGG 1 cut(s) 265
BslFI GGGAC 1 cut(s) 669
BslI CCNNNNNNNGG 3 cut(s) 478, 692, 804
BsmAI GTCTC 4 cut(s) 108, 217, 324, 1069
BsmFI GGGAC 1 cut(s) 669
Bso31I GGTCTC 1 cut(s) 108
Bsp1286I GDGCHC 3 cut(s) 191, 347, 1265
Bsp1407I TGTACA 1 cut(s) 847
Bsp143I GATC 7 cut(s) 55, 275, 329, 421, 823, 966, 1314
Bsp19I CCATGG 2 cut(s) 798, 1068
BspACI CCGC 6 cut(s) 100, 389, 768, 1089, 1119, 1171
BspCNI CTCAG 3 cut(s) 177, 1347, 1463
BspFNI CGCG 1 cut(s) 1089
BspLI GGNNCC 4 cut(s) 246, 685, 1105, 1398
BspMI ACCTGC 1 cut(s) 552
BspPI GGATC 3 cut(s) 283, 337, 416
BspTNI GGTCTC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 1171
BsrDI GCAATG 1 cut(s) 1421
BsrFI RCCGGY 1 cut(s) 264
BsrGI TGTACA 1 cut(s) 847
BsrI ACTGG 3 cut(s) 370, 582, 1036
BssAI RCCGGY 1 cut(s) 264
BssECI CCNNGG 5 cut(s) 655, 798, 1068, 1143, 1375
BssMI GATC 7 cut(s) 55, 275, 329, 421, 823, 966, 1314
BssSI CACGAG 2 cut(s) 1074, 1473
BssT1I CCWWGG 3 cut(s) 798, 1068, 1143
Bst2BI CACGAG 2 cut(s) 1074, 1473
Bst2UI CCWGG 3 cut(s) 473, 656, 1377
Bst4CI ACNGT 3 cut(s) 539, 737, 1300
BstAPI GCANNNNNTGC 2 cut(s) 38, 293
BstAUI TGTACA 1 cut(s) 847
BstC8I GCNNGC 6 cut(s) 159, 289, 497, 501, 603, 1176
BstDEI CTNAG 4 cut(s) 185, 1039, 1334, 1450
BstDSI CCRYGG 2 cut(s) 798, 1068
BstF5I GGATG 4 cut(s) 33, 889, 1195, 1406
BstFNI CGCG 1 cut(s) 1089
BstH2I RGCGCY 1 cut(s) 1311
BstHHI GCGC 2 cut(s) 1310, 1488
BstKTI GATC 7 cut(s) 58, 278, 332, 424, 826, 969, 1317
BstMAI GTCTC 4 cut(s) 108, 217, 324, 1069
BstMBI GATC 7 cut(s) 55, 275, 329, 421, 823, 966, 1314
BstMWI GCNNNNNNNGC 8 cut(s) 38, 186, 293, 492, 602, 923, 1116, 1403
BstNI CCWGG 3 cut(s) 473, 656, 1377
BstNSI RCATGY 3 cut(s) 499, 503, 1178
BstSCI CCNGG 3 cut(s) 471, 654, 1375
BstSFI CTRYAG 1 cut(s) 921
BstUI CGCG 1 cut(s) 1089
BstV1I GCAGC 4 cut(s) 373, 649, 1415, 1478
BstV2I GAAGAC 2 cut(s) 834, 1235
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuI GTATCC 1 cut(s) 274
BtgI CCRYGG 2 cut(s) 798, 1068
BtsCI GGATG 4 cut(s) 33, 889, 1195, 1406
BveI ACCTGC 1 cut(s) 552
Cac8I GCNNGC 6 cut(s) 159, 289, 497, 501, 603, 1176
CaiI CAGNNNCTG 1 cut(s) 863
CfoI GCGC 2 cut(s) 1310, 1488
Cfr10I RCCGGY 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 683
CsiI ACCWGGT 1 cut(s) 471
Csp6I GTAC 3 cut(s) 164, 848, 1247
CspAI ACCGGT 1 cut(s) 264
CviQI GTAC 3 cut(s) 164, 848, 1247
DdeI CTNAG 4 cut(s) 185, 1039, 1334, 1450
DpnI GATC 7 cut(s) 57, 277, 331, 423, 825, 968, 1316
DpnII GATC 7 cut(s) 55, 275, 329, 421, 823, 966, 1314
DrdI GACNNNNNNGTC 1 cut(s) 681
DseDI GACNNNNNNGTC 1 cut(s) 681
Eco130I CCWWGG 3 cut(s) 798, 1068, 1143
Eco31I GGTCTC 1 cut(s) 108
Eco32I GATATC 2 cut(s) 717, 759
Eco47I GGWCC 1 cut(s) 683
Eco57I CTGAAG 2 cut(s) 447, 1466
EcoO109I RGGNCCY 1 cut(s) 683
EcoRII CCWGG 3 cut(s) 471, 654, 1375
EcoRV GATATC 2 cut(s) 717, 759
EcoT14I CCWWGG 3 cut(s) 798, 1068, 1143
EcoT22I ATGCAT 2 cut(s) 501, 505
ErhI CCWWGG 3 cut(s) 798, 1068, 1143
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 669
FauI CCCGC 1 cut(s) 761
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 6 cut(s) 387, 663, 1120, 1172, 1404, 1467
FokI GGATG 4 cut(s) 40, 896, 1182, 1393
Fsp4HI GCNGC 6 cut(s) 387, 663, 1120, 1172, 1404, 1467
FspBI CTAG 1 cut(s) 522
GlaI GCGC 2 cut(s) 1309, 1487
GluI GCNGC 6 cut(s) 387, 663, 1120, 1172, 1404, 1467
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 1383
HaeII RGCGCY 1 cut(s) 1311
HapII CCGG 1 cut(s) 265
HhaI GCGC 2 cut(s) 1310, 1488
Hin6I GCGC 2 cut(s) 1308, 1486
HinP1I GCGC 2 cut(s) 1308, 1486
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 3 cut(s) 1018, 1273, 1326
HinfI GANTC 4 cut(s) 122, 223, 941, 1454
HpaII CCGG 1 cut(s) 265
HphI GGTGA 2 cut(s) 98, 737
Hpy166II GTNNAC 3 cut(s) 469, 959, 1478
Hpy188I TCNGA 9 cut(s) 12, 280, 307, 334, 377, 1242, 1314, 1323, 1453
Hpy188III TCNNGA 6 cut(s) 59, 84, 425, 776, 933, 1475
Hpy8I GTNNAC 3 cut(s) 469, 959, 1478
HpyAV CCTTC 2 cut(s) 90, 237
HpyCH4III ACNGT 3 cut(s) 539, 737, 1300
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 9 cut(s) 41, 65, 499, 503, 815, 887, 902, 1185, 1294
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 186, 293, 492, 602, 923, 1116, 1403
HpyF3I CTNAG 4 cut(s) 185, 1039, 1334, 1450
HpySE526I ACGT 1 cut(s) 315
HspAI GCGC 2 cut(s) 1308, 1486
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 7 cut(s) 55, 275, 329, 421, 823, 966, 1314
LmnI GCTCC 7 cut(s) 342, 616, 659, 994, 1260, 1315, 1402
Lsp1109I GCAGC 4 cut(s) 373, 649, 1415, 1478
LweI GCATC 6 cut(s) 52, 373, 512, 874, 1044, 1415
MabI ACCWGGT 1 cut(s) 471
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 4 cut(s) 539, 628, 731, 1133
MalI GATC 7 cut(s) 57, 277, 331, 423, 825, 968, 1316
MbiI CCGCTC 1 cut(s) 1171
MboI GATC 7 cut(s) 55, 275, 329, 421, 823, 966, 1314
MboII GAAGA 7 cut(s) 392, 431, 716, 834, 1240, 1359, 1410
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 3 cut(s) 191, 347, 1265
MluCI AATT 9 cut(s) 87, 254, 394, 827, 878, 1092, 1163, 1253, 1391
MmeI TCCRAC 2 cut(s) 307, 1319
MnlI CCTC 5 cut(s) 693, 1015, 1072, 1459, 1495
Mph1103I ATGCAT 2 cut(s) 501, 505
MroXI GAANNNNTTC 1 cut(s) 1458
MseI TTAA 2 cut(s) 477, 1256
MslI CAYNNNNRTG 4 cut(s) 51, 194, 624, 635
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 3 cut(s) 473, 656, 1377
MvaI CCWGG 3 cut(s) 473, 656, 1377
MvnI CGCG 1 cut(s) 1089
MwoI GCNNNNNNNGC 8 cut(s) 38, 186, 293, 492, 602, 923, 1116, 1403
NcoI CCATGG 2 cut(s) 798, 1068
NdeI CATATG 1 cut(s) 607
NdeII GATC 7 cut(s) 55, 275, 329, 421, 823, 966, 1314
NlaIV GGNNCC 4 cut(s) 246, 685, 1105, 1398
NmuCI GTSAC 1 cut(s) 628
NsiI ATGCAT 2 cut(s) 501, 505
NspI RCATGY 3 cut(s) 499, 503, 1178
PaeI GCATGC 3 cut(s) 499, 503, 1178
PdmI GAANNNNTTC 1 cut(s) 1458
PfeI GAWTC 4 cut(s) 122, 223, 941, 1454
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 6 cut(s) 388, 664, 1121, 1173, 1405, 1468
PpuMI RGGWCCY 1 cut(s) 683
PsiI TTATAA 1 cut(s) 1097
Psp5II RGGWCCY 1 cut(s) 683
Psp6I CCWGG 3 cut(s) 471, 654, 1375
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 3 cut(s) 471, 654, 1375
PspN4I GGNNCC 4 cut(s) 246, 685, 1105, 1398
PspPI GGNCC 1 cut(s) 683
PspPPI RGGWCCY 1 cut(s) 683
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 3 cut(s) 165, 849, 1248
RsaNI GTAC 3 cut(s) 164, 848, 1247
RseI CAYNNNNRTG 4 cut(s) 51, 194, 624, 635
SaqAI TTAA 2 cut(s) 477, 1256
SatI GCNGC 6 cut(s) 387, 663, 1120, 1172, 1404, 1467
Sau3AI GATC 7 cut(s) 55, 275, 329, 421, 823, 966, 1314
Sau96I GGNCC 1 cut(s) 683
ScrFI CCNGG 3 cut(s) 473, 656, 1377
SduI GDGCHC 3 cut(s) 191, 347, 1265
SexAI ACCWGGT 1 cut(s) 471
SfaNI GCATC 6 cut(s) 52, 373, 512, 874, 1044, 1415
SfcI CTRYAG 1 cut(s) 921
SinI GGWCC 1 cut(s) 683
SmiMI CAYNNNNRTG 4 cut(s) 51, 194, 624, 635
SphI GCATGC 3 cut(s) 499, 503, 1178
Sse9I AATT 9 cut(s) 87, 254, 394, 827, 878, 1092, 1163, 1253, 1391
SsiI CCGC 6 cut(s) 100, 389, 768, 1089, 1119, 1171
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 3 cut(s) 471, 654, 1375
StyI CCWWGG 3 cut(s) 798, 1068, 1143
TaaI ACNGT 3 cut(s) 539, 737, 1300
TaiI ACGT 1 cut(s) 318
TaqI TCGA 2 cut(s) 58, 1284
TasI AATT 9 cut(s) 87, 254, 394, 827, 878, 1092, 1163, 1253, 1391
TatI WGTACW 3 cut(s) 163, 847, 1246
TauI GCSGC 2 cut(s) 1122, 1174
TfiI GAWTC 4 cut(s) 122, 223, 941, 1454
Tru1I TTAA 2 cut(s) 477, 1256
Tru9I TTAA 2 cut(s) 477, 1256
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 4 cut(s) 386, 662, 1403, 1466
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 8 cut(s) 63, 219, 577, 806, 1176, 1372, 1404, 1410
TspGWI ACGGA 2 cut(s) 206, 1509
VpaK11BI GGWCC 1 cut(s) 683
XapI RAATTY 2 cut(s) 394, 1163
XceI RCATGY 3 cut(s) 499, 503, 1178
XmnI GAANNNNTTC 1 cut(s) 1458
XspI CTAG 1 cut(s) 522
Zsp2I ATGCAT 2 cut(s) 501, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.