Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007983

Physical Location & Seq

Genomic Coordinates Reverse (-)

6563059 .. 6565385

Gene Structure 2327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGTCTTTCCAGAACAAGGGTTTATGGATGCGAAAGACCGGTGGGCATGTAAATGAGGGAGATGGAAATTTTGGCAACCATTCAAGAATGGAGCCAAAGCGGTCTCAACAATGGTTTGTAGATGCTGGTGAAGCAGAGCTGTTCCCAAACAAGAAGCAAGCAGTGCATATTCCAAACAGCAAATTGAGCTCAGGAATGTCAAATGAAAATGTCTCTTCTTGGGAGAATGCTTCCAGTTTCCAGTCAGTTCCCCACCAATTCATTGACCGGTTATTTGGATCTGATACAACAAGCTCTGTGAACTTTGCTGAAAGGAATGTGTCTCCTGTCGGATCAGATAATTGGAATCCAAGGAAGGGTATCGACGACCAGTTTGGAGAAGATGGATCTGTTAGTTTGTCAGTATCTCATGCGATGGAAGATCCTGAAACTCTTAGCTATGCTGGAATTAAAAAAGTCAAAGTCAATCAGGTCAGGGACGGTGACAATGCTATGCATGTTTCGAGGGAACATGGTTCTAATAGGGACAATAATAGTAACCTGTCCACAAATCAGGCATTTGATAGGATAAATGAAACTGGTTTTTTATCAGTAGGGCAGGCCTATGATAAGGAGCACAGTAGTGTCACACTAATGGGTCATGCCTACAACCAGAGGGATGCCCATGGCAGAGCAATAGGTCCCAGCTATGGCAAGGGGGATGAAAGTGTGGTAGCAATGGCTGACAGTTACAATAAGGGGAATGCAAATTTGATATCTTTTGGTGGGTTTCCTGGTGATCAAGATATTGTAGCCATGGGCAGGCCTGTTGGTAACTATGATCAATTATACCATCCGTCTACAGTTCAAACATCAGAAACTGTGTTCGAGAAGGAATTGGACGTATCAAATGCCAGTGCAGTTGATAATACTGCTTCTGTACCCAAAACAAGACCTGAGTCAGTTTCGAAGAATAAACCCGAGGTCAAAACATCAAAGAAACAAGCTCCAAACAGCTTCCCGTCAAATGTTAGGAGCTTGATTTCTACAGGCATGCTTGATGGGGTTCCTGTAAAGTATGTTTCCTTGGCACGTGAGGAGCTTCGCGGGATTATAAAAGGTGTCGGCTATCTATGTGGGTGTCAATCATGTAATTATACTAAGGTGCTTAATGCTTACGAGTTTGAGCGCCATGCTGGTTGCAAAACAAAGCATCCAAACAATCACATATTCTTTGAGAATGGCAAGACCATCTATCAGATAGTGCAAGAATTAAGGAGCACGCCTGAGAGCCTGTTGTTTGATACACTTCTAACTGTGTTTGGTGCTCCGATCAATCAGAAAGCTTTTAACAGTTGGAAAGAATCATTTCAAGCGGCAACTCGTGAACTTCAGCGTATTTATGGAAAGGAGGAACTGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas

Protein Analysis

469

Amino Acids

51.7

Weight (kDa)

6.41

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59830 AT5G59830 AT5G59830
fragaria_vesca	FvH4_3g35080 FvH4_3g35080
malus_domestica	MD03G1099200.v1.1 MD11G1113100.v1.1
prunus_persica	Prupe.6G083800_v2.0.a1 Prupe.6G083800_v2.0.a1 Prupe.6G083800_v2.0.a1 Prupe.6G083800_v2.0.a1
pyrus_communis	pycom03g08150 pycom11g09540
rosa_chinensis	RchiOBHm_Chr5g0063081
rosa_laevigata	RLG00000035602
rosa_multiflora	Rmu_sc0005045.1_g000041
rosa_roxburghii	Rroxscaffold_1G00017570
rosa_rugosa	Rorug05G0354100 Rorug05G0354200
rosa_samantha	Rh5AG414600 Rh5BG429500 Rh5CG452900 Rh5DG443000
rosa_wichuraiana	Rw5G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1094
AccI	GTMKAC	1 cut(s)	839
AccII	CGCG	1 cut(s)	1086
AciI	CCGC	3 cut(s)	100, 1086, 1355
AclWI	GGATC	4 cut(s)	286, 340, 394, 416
AcsI	RAATTY	2 cut(s)	67, 748
AcuI	CTGAAG	1 cut(s)	1355
AcvI	CACGTG	1 cut(s)	1073
AfaI	GTAC	1 cut(s)	921
AfiI	CCNNNNNNNGG	4 cut(s)	16, 356, 689, 801
AgeI	ACCGGT	2 cut(s)	38, 267
AgsI	TTSAA	3 cut(s)	84, 848, 1352
AjnI	CCWGG	1 cut(s)	772
AleI	CACNNNNGTG	1 cut(s)	621
Alw21I	GWGCWC	4 cut(s)	191, 618, 1262, 1309
Alw26I	GTCTC	3 cut(s)	108, 217, 327
AlwI	GGATC	4 cut(s)	286, 340, 394, 416
AlwNI	CAGNNNCTG	1 cut(s)	860
Ama87I	CYCGRG	1 cut(s)	959
AoxI	GGCC	2 cut(s)	600, 803
ApoI	RAATTY	2 cut(s)	67, 748
ArsI	GACNNNNNNTTYG	4 cut(s)	257, 289, 356, 388
AsiGI	ACCGGT	2 cut(s)	38, 267
Asp700I	GAANNNNTTC	1 cut(s)	1347
AspLEI	GCGC	1 cut(s)	1170
AspS9I	GGNCC	1 cut(s)	680
AsuHPI	GGTGA	3 cut(s)	140, 494, 788
AsuII	TTCGAA	1 cut(s)	947
AvaI	CYCGRG	1 cut(s)	959
AvaII	GGWCC	1 cut(s)	680
BanII	GRGCYC	1 cut(s)	191
BauI	CACGAG	1 cut(s)	1362
BbrPI	CACGTG	1 cut(s)	1073
Bbv12I	GWGCWC	4 cut(s)	191, 618, 1262, 1309
BccI	CCATC	6 cut(s)	56, 377, 409, 840, 1034, 1238
BciT130I	CCWGG	1 cut(s)	774
BclI	TGATCA	2 cut(s)	778, 820
BcoDI	GTCTC	3 cut(s)	108, 217, 327
BfmI	CTRYAG	2 cut(s)	840, 1026
BfoI	RGCGCY	1 cut(s)	1171
BisI	GCNGC	1 cut(s)	1356
BlsI	GCNGC	1 cut(s)	1357
Bme1390I	CCNGG	1 cut(s)	774
Bme18I	GGWCC	1 cut(s)	680
BmeT110I	CYCGRG	1 cut(s)	959
BmgT120I	GGNCC	1 cut(s)	680
BmiI	GGNNCC	3 cut(s)	93, 682, 1047
BmrFI	CCNGG	1 cut(s)	774
BmsI	GCATC	4 cut(s)	18, 112, 649, 1201
BoxI	GACNNNNGTC	1 cut(s)	937
Bpu10I	CCTNAGC	1 cut(s)	190
Bpu14I	TTCGAA	1 cut(s)	947
BsaAI	YACGTR	1 cut(s)	1073
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	5 cut(s)	350, 664, 795, 960, 1065
BsaWI	WCCGGW	2 cut(s)	38, 267
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 356, 689, 801
Bse118I	RCCGGY	2 cut(s)	38, 267
Bse1I	ACTGG	5 cut(s)	234, 241, 370, 583, 894
Bse3DI	GCAATG	1 cut(s)	723
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	5 cut(s)	350, 664, 795, 960, 1065
BseGI	GGATG	5 cut(s)	33, 664, 706, 832, 1192
BseLI	CCNNNNNNNGG	4 cut(s)	16, 356, 689, 801
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	3 cut(s)	204, 927, 1257
BseNI	ACTGG	5 cut(s)	234, 241, 370, 583, 894
BseRI	GAGGAG	1 cut(s)	1091
BseYI	CCCAGC	1 cut(s)	683
BsgI	GTGCAG	1 cut(s)	918
Bsh1236I	CGCG	1 cut(s)	1086
BshFI	GGCC	2 cut(s)	602, 805
BshTI	ACCGGT	2 cut(s)	38, 267
BsiHKAI	GWGCWC	4 cut(s)	191, 618, 1262, 1309
BsiHKCI	CYCGRG	1 cut(s)	959
BsiSI	CCGG	2 cut(s)	39, 268
BslFI	GGGAC	3 cut(s)	491, 539, 666
BslI	CCNNNNNNNGG	4 cut(s)	16, 356, 689, 801
BsmAI	GTCTC	3 cut(s)	108, 217, 327
BsmFI	GGGAC	3 cut(s)	491, 539, 666
BsmI	GAATGC	2 cut(s)	232, 748
BsnI	GGCC	2 cut(s)	602, 805
Bso31I	GGTCTC	1 cut(s)	108
BsoBI	CYCGRG	1 cut(s)	959
Bsp119I	TTCGAA	1 cut(s)	947
Bsp1286I	GDGCHC	4 cut(s)	191, 618, 1262, 1309
Bsp143I	GATC	7 cut(s)	278, 332, 386, 421, 778, 820, 1311
Bsp19I	CCATGG	2 cut(s)	664, 795
BspACI	CCGC	3 cut(s)	100, 1086, 1355
BspANI	GGCC	2 cut(s)	602, 805
BspCNI	CTCAG	3 cut(s)	203, 928, 1258
BspFNI	CGCG	1 cut(s)	1086
BspLI	GGNNCC	3 cut(s)	93, 682, 1047
BspPI	GGATC	4 cut(s)	286, 340, 394, 416
BspT104I	TTCGAA	1 cut(s)	947
BspTNI	GGTCTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	723
BsrFI	RCCGGY	2 cut(s)	38, 267
BsrI	ACTGG	5 cut(s)	234, 241, 370, 583, 894
BssAI	RCCGGY	2 cut(s)	38, 267
BssECI	CCNNGG	5 cut(s)	350, 664, 795, 960, 1065
BssMI	GATC	7 cut(s)	278, 332, 386, 421, 778, 820, 1311
BssSI	CACGAG	1 cut(s)	1362
BssT1I	CCWWGG	4 cut(s)	350, 664, 795, 1065
Bst2BI	CACGAG	1 cut(s)	1362
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	7 cut(s)	482, 620, 728, 844, 862, 1297, 1334
Bst6I	CTCTTC	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	1073
BstBI	TTCGAA	1 cut(s)	947
BstC8I	GCNNGC	5 cut(s)	159, 600, 803, 1034, 1262
BstDEI	CTNAG	5 cut(s)	190, 434, 936, 1140, 1266
BstDSI	CCRYGG	2 cut(s)	664, 795
BstF5I	GGATG	5 cut(s)	33, 664, 706, 832, 1192
BstFNI	CGCG	1 cut(s)	1086
BstH2I	RGCGCY	1 cut(s)	1171
BstHHI	GCGC	1 cut(s)	1170
BstKTI	GATC	7 cut(s)	281, 335, 389, 424, 781, 823, 1314
BstMAI	GTCTC	3 cut(s)	108, 217, 327
BstMBI	GATC	7 cut(s)	278, 332, 386, 421, 778, 820, 1311
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 163, 186
BstNI	CCWGG	1 cut(s)	774
BstNSI	RCATGY	3 cut(s)	50, 500, 1036
BstPAI	GACNNNNGTC	1 cut(s)	937
BstSCI	CCNGG	1 cut(s)	772
BstSFI	CTRYAG	2 cut(s)	840, 1026
BstUI	CGCG	1 cut(s)	1086
BstX2I	RGATCY	3 cut(s)	278, 386, 421
BstYI	RGATCY	3 cut(s)	278, 386, 421
BsuRI	GGCC	2 cut(s)	602, 805
BtgI	CCRYGG	2 cut(s)	664, 795
BtgZI	GCGATG	1 cut(s)	428
BtsCI	GGATG	5 cut(s)	33, 664, 706, 832, 1192
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	168, 901
Cac8I	GCNNGC	5 cut(s)	159, 600, 803, 1034, 1262
CaiI	CAGNNNCTG	1 cut(s)	860
CfoI	GCGC	1 cut(s)	1170
Cfr10I	RCCGGY	2 cut(s)	38, 267
Cfr13I	GGNCC	1 cut(s)	680
Csp6I	GTAC	1 cut(s)	920
CspAI	ACCGGT	2 cut(s)	38, 267
CviQI	GTAC	1 cut(s)	920
DdeI	CTNAG	5 cut(s)	190, 434, 936, 1140, 1266
DpnI	GATC	7 cut(s)	280, 334, 388, 423, 780, 822, 1313
DpnII	GATC	7 cut(s)	278, 332, 386, 421, 778, 820, 1311
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	189
Eco130I	CCWWGG	4 cut(s)	350, 664, 795, 1065
Eco147I	AGGCCT	2 cut(s)	602, 805
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	756
Eco47I	GGWCC	1 cut(s)	680
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	1355
Eco72I	CACGTG	1 cut(s)	1073
Eco88I	CYCGRG	1 cut(s)	959
EcoICRI	GAGCTC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	772
EcoRV	GATATC	1 cut(s)	756
EcoT14I	CCWWGG	4 cut(s)	350, 664, 795, 1065
EcoT22I	ATGCAT	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	4 cut(s)	350, 664, 795, 1065
FaqI	GGGAC	3 cut(s)	491, 539, 666
FauI	CCCGC	1 cut(s)	1079
FbaI	TGATCA	2 cut(s)	778, 820
FblI	GTMKAC	1 cut(s)	839
Fnu4HI	GCNGC	1 cut(s)	1356
FokI	GGATG	5 cut(s)	40, 671, 713, 819, 1179
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	1356
GlaI	GCGC	1 cut(s)	1169
GluI	GCNGC	1 cut(s)	1356
GsaI	CCCAGC	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	1171
HaeIII	GGCC	2 cut(s)	602, 805
HapII	CCGG	2 cut(s)	39, 268
HhaI	GCGC	1 cut(s)	1170
Hin6I	GCGC	1 cut(s)	1168
HinP1I	GCGC	1 cut(s)	1168
HindIII	AAGCTT	1 cut(s)	1323
HinfI	GANTC	3 cut(s)	346, 938, 1343
HpaII	CCGG	2 cut(s)	39, 268
HphI	GGTGA	3 cut(s)	140, 494, 788
Hpy166II	GTNNAC	4 cut(s)	301, 546, 840, 1367
Hpy188I	TCNGA	7 cut(s)	283, 332, 337, 856, 1239, 1311, 1320
Hpy188III	TCNNGA	7 cut(s)	10, 84, 192, 425, 782, 868, 1364
Hpy8I	GTNNAC	4 cut(s)	301, 546, 840, 1367
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	2 cut(s)	349, 865
HpyCH4III	ACNGT	7 cut(s)	482, 620, 728, 844, 862, 1297, 1334
HpyCH4IV	ACGT	2 cut(s)	882, 1072
HpyCH4V	TGCA	6 cut(s)	166, 496, 746, 899, 1182, 1246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 163, 186
HpyF3I	CTNAG	5 cut(s)	190, 434, 936, 1140, 1266
HpySE526I	ACGT	2 cut(s)	882, 1072
HspAI	GCGC	1 cut(s)	1168
Ksp22I	TGATCA	2 cut(s)	778, 820
Kzo9I	GATC	7 cut(s)	278, 332, 386, 421, 778, 820, 1311
LmnI	GCTCC	7 cut(s)	91, 613, 991, 1014, 1078, 1257, 1312
LweI	GCATC	4 cut(s)	18, 112, 649, 1201
MaeII	ACGT	2 cut(s)	882, 1072
MaeIII	GTNAC	5 cut(s)	482, 536, 625, 728, 812
MalI	GATC	7 cut(s)	280, 334, 388, 423, 780, 822, 1313
MboI	GATC	7 cut(s)	278, 332, 386, 421, 778, 820, 1311
MboII	GAAGA	4 cut(s)	207, 392, 431, 961
MflI	RGATCY	3 cut(s)	278, 386, 421
MhlI	GDGCHC	4 cut(s)	191, 618, 1262, 1309
MlyI	GAGTC	1 cut(s)	947
MmeI	TCCRAC	2 cut(s)	310, 1316
MnlI	CCTC	6 cut(s)	49, 498, 648, 955, 1069, 1384
Mph1103I	ATGCAT	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	1347
MseI	TTAA	4 cut(s)	450, 1149, 1253, 1329
MslI	CAYNNNNRTG	3 cut(s)	51, 621, 632
MspI	CCGG	2 cut(s)	39, 268
MspR9I	CCNGG	1 cut(s)	774
Mva1269I	GAATGC	2 cut(s)	232, 748
MvaI	CCWGG	1 cut(s)	774
MvnI	CGCG	1 cut(s)	1086
MwoI	GCNNNNNNNGC	3 cut(s)	131, 163, 186
NcoI	CCATGG	2 cut(s)	664, 795
NdeII	GATC	7 cut(s)	278, 332, 386, 421, 778, 820, 1311
NlaIV	GGNNCC	3 cut(s)	93, 682, 1047
NmuCI	GTSAC	2 cut(s)	482, 625
NsiI	ATGCAT	1 cut(s)	498
NspI	RCATGY	3 cut(s)	50, 500, 1036
NspV	TTCGAA	1 cut(s)	947
OliI	CACNNNNGTG	1 cut(s)	621
PaeI	GCATGC	1 cut(s)	1036
PceI	AGGCCT	2 cut(s)	602, 805
PctI	GAATGC	2 cut(s)	232, 748
PdmI	GAANNNNTTC	1 cut(s)	1347
PfeI	GAWTC	2 cut(s)	346, 1343
PinAI	ACCGGT	2 cut(s)	38, 267
PkrI	GCNGC	1 cut(s)	1357
PleI	GAGTC	1 cut(s)	946
PmaCI	CACGTG	1 cut(s)	1073
PmlI	CACGTG	1 cut(s)	1073
PpsI	GAGTC	1 cut(s)	946
Ppu21I	YACGTR	1 cut(s)	1073
PpuMI	RGGWCCY	1 cut(s)	680
PshAI	GACNNNNGTC	1 cut(s)	937
PsiI	TTATAA	1 cut(s)	1094
Psp124BI	GAGCTC	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	680
Psp6I	CCWGG	1 cut(s)	772
PspCI	CACGTG	1 cut(s)	1073
PspFI	CCCAGC	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	3 cut(s)	93, 682, 1047
PspPI	GGNCC	1 cut(s)	680
PspPPI	RGGWCCY	1 cut(s)	680
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	3 cut(s)	278, 386, 421
RsaI	GTAC	1 cut(s)	921
RsaNI	GTAC	1 cut(s)	920
RseI	CAYNNNNRTG	3 cut(s)	51, 621, 632
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	4 cut(s)	450, 1149, 1253, 1329
SatI	GCNGC	1 cut(s)	1356
Sau3AI	GATC	7 cut(s)	278, 332, 386, 421, 778, 820, 1311
Sau96I	GGNCC	1 cut(s)	680
SchI	GAGTC	1 cut(s)	947
ScrFI	CCNGG	1 cut(s)	774
SduI	GDGCHC	4 cut(s)	191, 618, 1262, 1309
SfaNI	GCATC	4 cut(s)	18, 112, 649, 1201
SfcI	CTRYAG	2 cut(s)	840, 1026
SfuI	TTCGAA	1 cut(s)	947
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	3 cut(s)	51, 621, 632
SphI	GCATGC	1 cut(s)	1036
SseBI	AGGCCT	2 cut(s)	602, 805
SsiI	CCGC	3 cut(s)	100, 1086, 1355
SstI	GAGCTC	1 cut(s)	191
StuI	AGGCCT	2 cut(s)	602, 805
StyD4I	CCNGG	1 cut(s)	772
StyI	CCWWGG	4 cut(s)	350, 664, 795, 1065
TaaI	ACNGT	7 cut(s)	482, 620, 728, 844, 862, 1297, 1334
TaiI	ACGT	2 cut(s)	885, 1075
TaqI	TCGA	4 cut(s)	363, 503, 867, 947
TauI	GCSGC	1 cut(s)	1358
TfiI	GAWTC	2 cut(s)	346, 1343
Tru1I	TTAA	4 cut(s)	450, 1149, 1253, 1329
Tru9I	TTAA	4 cut(s)	450, 1149, 1253, 1329
TscAI	CASTG	2 cut(s)	168, 901
TseFI	GTSAC	2 cut(s)	482, 625
Tsp45I	GTSAC	2 cut(s)	482, 625
TspDTI	ATGAA	4 cut(s)	219, 250, 588, 717
TspGWI	ACGGA	1 cut(s)	825
TspRI	CASTG	2 cut(s)	168, 901
VpaK11BI	GGWCC	1 cut(s)	680
XapI	RAATTY	2 cut(s)	67, 748
XceI	RCATGY	3 cut(s)	50, 500, 1036
XmiI	GTMKAC	1 cut(s)	839
XmnI	GAANNNNTTC	1 cut(s)	1347
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.