FvH4_3g35080

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007983
Physical Location & Seq
Forward (+)
30290016 .. 30292988
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35080.t2

Sequence Viewer

Length: 1410 bp
ATGTCTTTTCAGAACAAGGGGTTTTGGATGGCAAAGGGTGCGGGACATGACAATGATGGAGATGCAACTTTTGGTAACCCTTCTAGAATTGAACCAAAGCGGTCTCACCAATGGTTTGTAGATTCTGCTGAACCCCAGCTGTTCCCCAACAAAAAGCAAGCAGTACATATTCCAAACAGCAAATTGAGCGTGGAAATGCCAAATGAAAATGTCTCTTGGGAGAATCCTTCCAGTTTTCAGTCGGTTCCACATCAATTTATTGACCGGTTATTTGGATCTGATACAGCAAGCTCTACCAACTTTTCAGACAGGAACGTGTCTCCTGTTGGATCAGATGATTGGAGCATAAGAACAAAGGGTATCGATGACCAATTCGGATCAGATGCACCTGTAAATTTGTCCATATCTCATGCTATTGAAAATCCTGAAGTATGTCTTGGCTATGCTGGAATTAGAAAAATTAAAGTCAACCAGGTTAAGGACAGCGACATTGACATGCATGCGTCAAGGGAACATGGTTCTAGTAGGGAATATAACATTAATCTGCCCACAAGTCAGGCATTCGATAGAACACACGAAACCGGTTTCATATCAGCTGGGCAGGCATATGATAAGGAGCATGATAATGTCACATTAATGGGTCATGCCTACAACAAGGGAGCTGCCCATGTCAGACCTTTAGGTGCCAGTTATGGGAAGAGGGAAGAAAATGTGATATCAATGAGTGATGGTTATAGTAAAGGGAATGCAAATATGATATCTTTTGGCGGGTTTCCCGATGAACAAGATATGAACACCATGGGAAGGGCTGTTGCAAACTATGATCAATTATATCATCAGTCTTCAGTTCAGACATCAGAAACTGCGCATGAGAAAGAATTGGACACAACAAATGCCAATGCAGTTGATAATACTGCGTCTGTAGCTAAATCAAAACCAGAATCAGCTTCCAAGAGTAAACCAGAAAGCAAACCGACAAAGAAACAAGCTCCAAACAGCTTCCCCTCTAATGTTAGAAGCTTGATTTCAACAGGCATCTTAGATGGCGTTCCCGTAAAGTATGTCTCGATGGCACGTGAGGAACTTCGCGGAATTATAAAGGGTGCCAGCTATCTTTGTGGGTGTCAATCATGTAACTTCACTAAGGGGCTTAATGCTTATGAATTTGAGCGGCATGCTGGTTGCAAAACAAAACATCCAAACAATCACATATACTTTGAGAATGGGAAGACCATCTATCAGATAGTACAGGAATTAAGGAGCACCCCTGAGAGCTTGTTATTTGATACAATGCAAACAGTCTTTGGGGCTCCGATCAATCAGAAAGCTTTTCTCAGTTGGAAAGAATCCTTTCAAGCCGCAACTCGTGAACTTCAGCGCATTTACGGAAAGGAAGAACTGAACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

470

Amino Acids

51.97

Weight (kDa)

6.26

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 361 - 416 2.9e-13 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1097
Acc16I TGCGCA 1 cut(s) 867
AccB1I GGYRCC 2 cut(s) 683, 1103
AccBSI CCGCTC 1 cut(s) 1171
AccII CGCG 1 cut(s) 1089
AciI CCGC 6 cut(s) 41, 100, 768, 1089, 1171, 1359
AclWI GGATC 3 cut(s) 283, 337, 385
AcsI RAATTY 2 cut(s) 394, 1163
AcuI CTGAAG 3 cut(s) 447, 828, 1358
AcvI CACGTG 1 cut(s) 1076
AfaI GTAC 2 cut(s) 165, 1248
AfiI CCNNNNNNNGG 3 cut(s) 478, 693, 804
AflIII ACRYGT 1 cut(s) 315
AgeI ACCGGT 2 cut(s) 264, 581
AgsI TTSAA 4 cut(s) 92, 419, 1029, 1355
AjnI CCWGG 1 cut(s) 471
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
Alw21I GWGCWC 1 cut(s) 1265
Alw26I GTCTC 4 cut(s) 108, 217, 324, 1069
AlwI GGATC 3 cut(s) 283, 337, 385
AlwNI CAGNNNCTG 1 cut(s) 863
ApeKI GCWGC 1 cut(s) 662
ApoI RAATTY 2 cut(s) 394, 1163
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AseI ATTAAT 2 cut(s) 540, 635
AsiGI ACCGGT 2 cut(s) 264, 581
Asp700I GAANNNNTTC 1 cut(s) 1350
AspLEI GCGC 2 cut(s) 868, 1380
AsuHPI GGTGA 1 cut(s) 98
BanI GGYRCC 2 cut(s) 683, 1103
BanII GRGCYC 1 cut(s) 1312
BauI CACGAG 1 cut(s) 1365
BbrPI CACGTG 1 cut(s) 1076
BbsI GAAGAC 2 cut(s) 834, 1235
Bbv12I GWGCWC 1 cut(s) 1265
BbvI GCAGC 1 cut(s) 649
BccI CCATC 6 cut(s) 22, 50, 722, 1037, 1063, 1241
BciT130I CCWGG 1 cut(s) 473
BclI TGATCA 1 cut(s) 823
BcoDI GTCTC 4 cut(s) 108, 217, 324, 1069
BfaI CTAG 2 cut(s) 84, 522
BfmI CTRYAG 1 cut(s) 921
BisI GCNGC 3 cut(s) 663, 1172, 1359
BlsI GCNGC 3 cut(s) 664, 1173, 1360
Bme1390I CCNGG 1 cut(s) 473
BmiI GGNNCC 4 cut(s) 246, 685, 1105, 1311
BmrFI CCNGG 1 cut(s) 473
BmsI GCATC 3 cut(s) 52, 373, 1044
BpiI GAAGAC 2 cut(s) 834, 1235
Bsa29I ATCGAT 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 1076
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 798
BsaWI WCCGGW 2 cut(s) 264, 581
Bsc4I CCNNNNNNNGG 3 cut(s) 478, 693, 804
Bse118I RCCGGY 2 cut(s) 264, 581
Bse1I ACTGG 2 cut(s) 231, 687
BseBI CCWGG 1 cut(s) 473
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 798
BseGI GGATG 2 cut(s) 33, 1195
BseLI CCNNNNNNNGG 3 cut(s) 478, 693, 804
BseMII CTCAG 2 cut(s) 1260, 1348
BseNI ACTGG 2 cut(s) 231, 687
BseXI GCAGC 1 cut(s) 649
BseYI CCCAGC 2 cut(s) 135, 596
Bsh1236I CGCG 1 cut(s) 1089
BshNI GGYRCC 2 cut(s) 683, 1103
BshTI ACCGGT 2 cut(s) 264, 581
BshVI ATCGAT 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 1265
BsiSI CCGG 2 cut(s) 265, 582
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 3 cut(s) 478, 693, 804
BsmAI GTCTC 4 cut(s) 108, 217, 324, 1069
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 2 cut(s) 560, 751
Bso31I GGTCTC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 1265, 1312
Bsp143I GATC 5 cut(s) 275, 329, 377, 823, 1314
Bsp19I CCATGG 1 cut(s) 798
BspACI CCGC 6 cut(s) 41, 100, 768, 1089, 1171, 1359
BspCNI CTCAG 2 cut(s) 1261, 1347
BspDI ATCGAT 1 cut(s) 363
BspFNI CGCG 1 cut(s) 1089
BspLI GGNNCC 4 cut(s) 246, 685, 1105, 1311
BspPI GGATC 3 cut(s) 283, 337, 385
BspT107I GGYRCC 2 cut(s) 683, 1103
BspTNI GGTCTC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 1171
BsrFI RCCGGY 2 cut(s) 264, 581
BsrI ACTGG 2 cut(s) 231, 687
BssAI RCCGGY 2 cut(s) 264, 581
BssECI CCNNGG 1 cut(s) 798
BssMI GATC 5 cut(s) 275, 329, 377, 823, 1314
BssSI CACGAG 1 cut(s) 1365
BssT1I CCWWGG 1 cut(s) 798
Bst2BI CACGAG 1 cut(s) 1365
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 1 cut(s) 1300
Bst6I CTCTTC 1 cut(s) 692
BstAPI GCANNNNNTGC 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 1076
BstC8I GCNNGC 6 cut(s) 159, 289, 501, 603, 1108, 1176
BstDEI CTNAG 4 cut(s) 1039, 1143, 1269, 1334
BstDSI CCRYGG 1 cut(s) 798
BstEII GGTNACC 1 cut(s) 74
BstF5I GGATG 2 cut(s) 33, 1195
BstFNI CGCG 1 cut(s) 1089
BstHHI GCGC 2 cut(s) 868, 1380
BstKTI GATC 5 cut(s) 278, 332, 380, 826, 1317
BstMAI GTCTC 4 cut(s) 108, 217, 324, 1069
BstMBI GATC 5 cut(s) 275, 329, 377, 823, 1314
BstMWI GCNNNNNNNGC 4 cut(s) 38, 186, 602, 923
BstNI CCWGG 1 cut(s) 473
BstNSI RCATGY 3 cut(s) 499, 503, 1178
BstPI GGTNACC 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 471
BstSFI CTRYAG 1 cut(s) 921
BstUI CGCG 1 cut(s) 1089
BstV1I GCAGC 1 cut(s) 649
BstV2I GAAGAC 2 cut(s) 834, 1235
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
Bsu15I ATCGAT 1 cut(s) 363
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 798
BtsCI GGATG 2 cut(s) 33, 1195
Cac8I GCNNGC 6 cut(s) 159, 289, 501, 603, 1108, 1176
CaiI CAGNNNCTG 1 cut(s) 863
CfoI GCGC 2 cut(s) 868, 1380
Cfr10I RCCGGY 2 cut(s) 264, 581
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 2 cut(s) 492, 906
CsiI ACCWGGT 1 cut(s) 471
Csp6I GTAC 2 cut(s) 164, 1247
CspAI ACCGGT 2 cut(s) 264, 581
CviQI GTAC 2 cut(s) 164, 1247
DdeI CTNAG 4 cut(s) 1039, 1143, 1269, 1334
DpnI GATC 5 cut(s) 277, 331, 379, 825, 1316
DpnII GATC 5 cut(s) 275, 329, 377, 823, 1314
Eam1104I CTCTTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 692
Eco130I CCWWGG 1 cut(s) 798
Eco24I GRGCYC 1 cut(s) 1312
Eco31I GGTCTC 1 cut(s) 108
Eco32I GATATC 2 cut(s) 717, 759
Eco57I CTGAAG 3 cut(s) 447, 828, 1358
Eco72I CACGTG 1 cut(s) 1076
Eco91I GGTNACC 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 471
EcoRV GATATC 2 cut(s) 717, 759
EcoT14I CCWWGG 1 cut(s) 798
EcoT22I ATGCAT 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 1312
ErhI CCWWGG 1 cut(s) 798
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 57
FauI CCCGC 2 cut(s) 34, 761
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 3 cut(s) 663, 1172, 1359
FokI GGATG 2 cut(s) 40, 1182
FriOI GRGCYC 1 cut(s) 1312
Fsp4HI GCNGC 3 cut(s) 663, 1172, 1359
FspBI CTAG 2 cut(s) 84, 522
FspI TGCGCA 1 cut(s) 867
GlaI GCGC 2 cut(s) 867, 1379
GluI GCNGC 3 cut(s) 663, 1172, 1359
GsaI CCCAGC 2 cut(s) 139, 600
HapII CCGG 2 cut(s) 265, 582
HgaI GACGC 2 cut(s) 492, 906
HhaI GCGC 2 cut(s) 868, 1380
Hin6I GCGC 2 cut(s) 866, 1378
HinP1I GCGC 2 cut(s) 866, 1378
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 2 cut(s) 1018, 1326
HinfI GANTC 4 cut(s) 122, 223, 941, 1346
HpaII CCGG 2 cut(s) 265, 582
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 3 cut(s) 469, 959, 1370
Hpy188III TCNNGA 5 cut(s) 84, 425, 776, 1066, 1367
Hpy8I GTNNAC 3 cut(s) 469, 959, 1370
HpyAV CCTTC 3 cut(s) 90, 237, 798
HpyCH4III ACNGT 1 cut(s) 1300
HpyCH4IV ACGT 2 cut(s) 315, 1075
HpyCH4V TGCA 8 cut(s) 65, 386, 499, 749, 815, 902, 1185, 1294
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 186, 602, 923
HpyF3I CTNAG 4 cut(s) 1039, 1143, 1269, 1334
HpySE526I ACGT 2 cut(s) 315, 1075
HspAI GCGC 2 cut(s) 866, 1378
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 5 cut(s) 275, 329, 377, 823, 1314
LmnI GCTCC 6 cut(s) 342, 616, 659, 994, 1260, 1315
Lsp1109I GCAGC 1 cut(s) 649
LweI GCATC 3 cut(s) 52, 373, 1044
MabI ACCWGGT 1 cut(s) 471
MaeI CTAG 2 cut(s) 84, 522
MaeII ACGT 2 cut(s) 315, 1075
MaeIII GTNAC 3 cut(s) 74, 628, 1133
MalI GATC 5 cut(s) 277, 331, 379, 825, 1316
MbiI CCGCTC 1 cut(s) 1171
MboI GATC 5 cut(s) 275, 329, 377, 823, 1314
MboII GAAGA 5 cut(s) 709, 716, 834, 1240, 1406
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 2 cut(s) 1265, 1312
MmeI TCCRAC 2 cut(s) 307, 1319
MnlI CCTC 3 cut(s) 693, 1015, 1072
Mph1103I ATGCAT 1 cut(s) 501
MroXI GAANNNNTTC 1 cut(s) 1350
MseI TTAA 6 cut(s) 462, 477, 540, 635, 1152, 1256
MslI CAYNNNNRTG 4 cut(s) 51, 494, 624, 635
MspA1I CMGCKG 2 cut(s) 139, 596
MspI CCGG 2 cut(s) 265, 582
MspR9I CCNGG 1 cut(s) 473
Mva1269I GAATGC 2 cut(s) 560, 751
MvaI CCWGG 1 cut(s) 473
MvnI CGCG 1 cut(s) 1089
MwoI GCNNNNNNNGC 4 cut(s) 38, 186, 602, 923
NcoI CCATGG 1 cut(s) 798
NdeI CATATG 1 cut(s) 607
NdeII GATC 5 cut(s) 275, 329, 377, 823, 1314
NlaIV GGNNCC 4 cut(s) 246, 685, 1105, 1311
NmuCI GTSAC 1 cut(s) 628
NsbI TGCGCA 1 cut(s) 867
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 3 cut(s) 499, 503, 1178
PaeI GCATGC 2 cut(s) 503, 1178
PctI GAATGC 2 cut(s) 560, 751
PdmI GAANNNNTTC 1 cut(s) 1350
PfeI GAWTC 4 cut(s) 122, 223, 941, 1346
PinAI ACCGGT 2 cut(s) 264, 581
PkrI GCNGC 3 cut(s) 664, 1173, 1360
PmaCI CACGTG 1 cut(s) 1076
PmlI CACGTG 1 cut(s) 1076
Ppu21I YACGTR 1 cut(s) 1076
PshBI ATTAAT 2 cut(s) 540, 635
PsiI TTATAA 1 cut(s) 1097
Psp6I CCWGG 1 cut(s) 471
PspCI CACGTG 1 cut(s) 1076
PspEI GGTNACC 1 cut(s) 74
PspFI CCCAGC 2 cut(s) 135, 596
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 4 cut(s) 246, 685, 1105, 1311
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 1 cut(s) 275
PvuII CAGCTG 2 cut(s) 139, 596
RsaI GTAC 2 cut(s) 165, 1248
RsaNI GTAC 2 cut(s) 164, 1247
RseI CAYNNNNRTG 4 cut(s) 51, 494, 624, 635
SaqAI TTAA 6 cut(s) 462, 477, 540, 635, 1152, 1256
SatI GCNGC 3 cut(s) 663, 1172, 1359
Sau3AI GATC 5 cut(s) 275, 329, 377, 823, 1314
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 2 cut(s) 1265, 1312
SexAI ACCWGGT 1 cut(s) 471
SfaNI GCATC 3 cut(s) 52, 373, 1044
SfcI CTRYAG 1 cut(s) 921
SmiMI CAYNNNNRTG 4 cut(s) 51, 494, 624, 635
SphI GCATGC 2 cut(s) 503, 1178
SsiI CCGC 6 cut(s) 41, 100, 768, 1089, 1171, 1359
SspMI CTAG 2 cut(s) 84, 522
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 1 cut(s) 798
TaaI ACNGT 1 cut(s) 1300
TaiI ACGT 2 cut(s) 318, 1078
TaqI TCGA 3 cut(s) 363, 564, 1067
TatI WGTACW 2 cut(s) 163, 1246
TauI GCSGC 2 cut(s) 1174, 1361
TfiI GAWTC 4 cut(s) 122, 223, 941, 1346
Tru1I TTAA 6 cut(s) 462, 477, 540, 635, 1152, 1256
Tru9I TTAA 6 cut(s) 462, 477, 540, 635, 1152, 1256
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 1 cut(s) 662
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 5 cut(s) 219, 577, 795, 806, 1176
TspGWI ACGGA 1 cut(s) 1401
VspI ATTAAT 2 cut(s) 540, 635
XapI RAATTY 2 cut(s) 394, 1163
XbaI TCTAGA 1 cut(s) 83
XceI RCATGY 3 cut(s) 499, 503, 1178
XmnI GAANNNNTTC 1 cut(s) 1350
XspI CTAG 2 cut(s) 84, 522
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.