Rroxscaffold_1G00017570

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007983
Physical Location & Seq
Reverse (-)
21615793 .. 21618594
2802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00017570.1

Sequence Viewer

Length: 1410 bp
ATGTCGTTTCAGAACAAGGGTTTTTGGATGGCAAAGGGTGCAGGACATGAAAATGATCGAGATGCAACTTTTGGTAGCCCTTCAAGAATTGAACCAAAGCGGTCTCACCAATGGTTTGTAGAGTCTGCTGAACCTCAGATGTTCCCCAACAAAAAGCAAGCAGTACATATTCCAAACAGTAAACTGAGCACGGATATGCCAAATGAAAATGTCTCTTGGGAGAATCCTTCCAGCTTTCAGTCGGTTCCCCATCAATTTATTGACCGGTTATTTGGATCGGATACAACAAGCTCTGCCAACTTTTCGGACAGGAACGTGTCTCCTGTTGGATCAGATGATTGGAGCATAAGAACAAAGGGTATTGATGACCAGTTTGGAGAAGATGCTGCGGTAAATTTGTCCATATCTCATGCTATTGAAGATCCTGAAGTGTGTCTTGGCTTTGCTGGGATTAGGAAAATCAAAGTCAACCAGGTTAAGGACAGCGACAATGGCATGCAAGCATCAAGGGAACATGGTTCTAGCAGGGAATATAACAGTAACCTGCCCACAAGTCAGGCATTTGATAGGACACACGAAACCAGTTTCATATCAGCAGGGCAGGCATATGATAAGGAGCATGGTAATGTCACACTTATGGGTCATGCCTACAACCAGGGAGCTGCCCATGTTAGACCTTTAGGTCCCAACTATGGCAAGAGGGAAGAAAATGTGATATCGATGGGTGATGGTTACGGTAAAGGTAATGCCAATATGATATCTTTTGGCGGGTTTCCTGATGAACAAGATATGAACACCATGGGCAGGGCTGTTGCAAACTATGATCAATTATACCATCAGTCTTCTGTGCAAACATCAGAAACTGCGAATGAGAAAGAATTGGATGCAATAAATGTCAATGCAGTTGATAATACTGCTTCTGTAGCTAAATCAAGACCAGAATCAGCTTCCAAGAGTAAACCAGAGATCAAACCAATAAAGAAACAAGCTCCAAACAGCTTCCCCTCTAATGTTAGAAGCTTGATTTCAACTGGCATCTTAGATGGCGTTCCTGTAAAGTATGTCTCCATGGCACGTGAGGAACTTCGCGGAATTATAAAGGGTTCCAGCTATCTTTGCGGCTGTCAATCATGTAACTTTACCAAGGGGCTTAATGCTTATGAATTTGAGCGGCATGCTGGTTGCAAAACAAAACATCCAAACAATCACATATACTTTGAGAATGGGAAGACCATCTATCAGATAGTACAGGAATTAAGGAGCACCCCTGAAAGCTTGTTATTCGATACAATGCAAACGGTCTTTGGCGCTCCAATCAATCAGAAAGCTTTTCTCAGTTGGAAAGAATCCTTTCAAGCAGCAACTCGTGAACTTCAGCGCATTTACGGAAAGGAGGAACTGAACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

469

Amino Acids

52.02

Weight (kDa)

6.18

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 364 - 419 2.8e-13 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1097
AasI GACNNNNNNGTC 1 cut(s) 681
Acc36I ACCTGC 1 cut(s) 552
AccBSI CCGCTC 1 cut(s) 1171
AccII CGCG 1 cut(s) 1089
AciI CCGC 6 cut(s) 100, 389, 768, 1089, 1119, 1171
AclWI GGATC 3 cut(s) 283, 337, 416
AcsI RAATTY 2 cut(s) 394, 1163
AcuI CTGAAG 2 cut(s) 447, 1358
AcvI CACGTG 1 cut(s) 1076
AfaI GTAC 2 cut(s) 165, 1248
AfiI CCNNNNNNNGG 3 cut(s) 478, 692, 804
AflIII ACRYGT 1 cut(s) 315
AgeI ACCGGT 1 cut(s) 264
AgsI TTSAA 5 cut(s) 84, 92, 419, 1029, 1355
AjnI CCWGG 2 cut(s) 471, 654
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
Alw21I GWGCWC 2 cut(s) 191, 1265
Alw26I GTCTC 4 cut(s) 108, 217, 324, 1069
AlwI GGATC 3 cut(s) 283, 337, 416
AlwNI CAGNNNCTG 1 cut(s) 863
ApeKI GCWGC 3 cut(s) 386, 662, 1358
ApoI RAATTY 2 cut(s) 394, 1163
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AsiGI ACCGGT 1 cut(s) 264
Asp700I GAANNNNTTC 1 cut(s) 1350
AspLEI GCGC 2 cut(s) 1310, 1380
AspS9I GGNCC 1 cut(s) 683
AsuHPI GGTGA 2 cut(s) 98, 737
AvaII GGWCC 1 cut(s) 683
BauI CACGAG 1 cut(s) 1365
BbrPI CACGTG 1 cut(s) 1076
BbsI GAAGAC 2 cut(s) 834, 1235
Bbv12I GWGCWC 2 cut(s) 191, 1265
BbvI GCAGC 3 cut(s) 373, 649, 1370
BccI CCATC 7 cut(s) 22, 258, 715, 722, 843, 1037, 1241
BciT130I CCWGG 2 cut(s) 473, 656
BciVI GTATCC 1 cut(s) 274
BclI TGATCA 1 cut(s) 823
BcoDI GTCTC 4 cut(s) 108, 217, 324, 1069
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 1 cut(s) 921
BfoI RGCGCY 1 cut(s) 1311
BfuAI ACCTGC 1 cut(s) 552
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 5 cut(s) 387, 663, 1120, 1172, 1359
BlsI GCNGC 5 cut(s) 388, 664, 1121, 1173, 1360
Bme1390I CCNGG 2 cut(s) 473, 656
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 1 cut(s) 683
BmiI GGNNCC 3 cut(s) 246, 685, 1105
BmrFI CCNGG 2 cut(s) 473, 656
BmsI GCATC 5 cut(s) 52, 373, 512, 874, 1044
BpiI GAAGAC 2 cut(s) 834, 1235
Bsa29I ATCGAT 1 cut(s) 719
BsaAI YACGTR 1 cut(s) 1076
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 4 cut(s) 655, 798, 1068, 1143
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 3 cut(s) 478, 692, 804
Bse118I RCCGGY 1 cut(s) 264
Bse1I ACTGG 3 cut(s) 370, 582, 1036
BseBI CCWGG 2 cut(s) 473, 656
BseCI ATCGAT 1 cut(s) 719
BseDI CCNNGG 4 cut(s) 655, 798, 1068, 1143
BseGI GGATG 3 cut(s) 33, 889, 1195
BseLI CCNNNNNNNGG 3 cut(s) 478, 692, 804
BseMII CTCAG 3 cut(s) 149, 176, 1348
BseNI ACTGG 3 cut(s) 370, 582, 1036
BseXI GCAGC 3 cut(s) 373, 649, 1370
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 1089
BshTI ACCGGT 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 719
BsiHKAI GWGCWC 2 cut(s) 191, 1265
BsiSI CCGG 1 cut(s) 265
BslFI GGGAC 1 cut(s) 669
BslI CCNNNNNNNGG 3 cut(s) 478, 692, 804
BsmAI GTCTC 4 cut(s) 108, 217, 324, 1069
BsmFI GGGAC 1 cut(s) 669
Bso31I GGTCTC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 191, 1265
Bsp143I GATC 6 cut(s) 55, 275, 329, 421, 823, 966
Bsp19I CCATGG 2 cut(s) 798, 1068
BspACI CCGC 6 cut(s) 100, 389, 768, 1089, 1119, 1171
BspCNI CTCAG 3 cut(s) 148, 177, 1347
BspDI ATCGAT 1 cut(s) 719
BspFNI CGCG 1 cut(s) 1089
BspLI GGNNCC 3 cut(s) 246, 685, 1105
BspMI ACCTGC 1 cut(s) 552
BspPI GGATC 3 cut(s) 283, 337, 416
BspTNI GGTCTC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 1171
BsrFI RCCGGY 1 cut(s) 264
BsrI ACTGG 3 cut(s) 370, 582, 1036
BssAI RCCGGY 1 cut(s) 264
BssECI CCNNGG 4 cut(s) 655, 798, 1068, 1143
BssMI GATC 6 cut(s) 55, 275, 329, 421, 823, 966
BssSI CACGAG 1 cut(s) 1365
BssT1I CCWWGG 3 cut(s) 798, 1068, 1143
Bst2BI CACGAG 1 cut(s) 1365
Bst2UI CCWGG 2 cut(s) 473, 656
Bst4CI ACNGT 4 cut(s) 179, 539, 737, 1300
BstAPI GCANNNNNTGC 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 1076
BstC8I GCNNGC 5 cut(s) 159, 497, 501, 603, 1176
BstDEI CTNAG 4 cut(s) 135, 185, 1039, 1334
BstDSI CCRYGG 2 cut(s) 798, 1068
BstF5I GGATG 3 cut(s) 33, 889, 1195
BstFNI CGCG 1 cut(s) 1089
BstH2I RGCGCY 1 cut(s) 1311
BstHHI GCGC 2 cut(s) 1310, 1380
BstKTI GATC 6 cut(s) 58, 278, 332, 424, 826, 969
BstMAI GTCTC 4 cut(s) 108, 217, 324, 1069
BstMBI GATC 6 cut(s) 55, 275, 329, 421, 823, 966
BstMWI GCNNNNNNNGC 5 cut(s) 38, 492, 602, 923, 1116
BstNI CCWGG 2 cut(s) 473, 656
BstNSI RCATGY 2 cut(s) 499, 1178
BstSCI CCNGG 2 cut(s) 471, 654
BstSFI CTRYAG 1 cut(s) 921
BstUI CGCG 1 cut(s) 1089
BstV1I GCAGC 3 cut(s) 373, 649, 1370
BstV2I GAAGAC 2 cut(s) 834, 1235
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
Bsu15I ATCGAT 1 cut(s) 719
BsuI GTATCC 1 cut(s) 274
BsuTUI ATCGAT 1 cut(s) 719
BtgI CCRYGG 2 cut(s) 798, 1068
BtsCI GGATG 3 cut(s) 33, 889, 1195
BveI ACCTGC 1 cut(s) 552
Cac8I GCNNGC 5 cut(s) 159, 497, 501, 603, 1176
CaiI CAGNNNCTG 1 cut(s) 863
CfoI GCGC 2 cut(s) 1310, 1380
Cfr10I RCCGGY 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 683
ClaI ATCGAT 1 cut(s) 719
CsiI ACCWGGT 1 cut(s) 471
Csp6I GTAC 2 cut(s) 164, 1247
CspAI ACCGGT 1 cut(s) 264
CviQI GTAC 2 cut(s) 164, 1247
DdeI CTNAG 4 cut(s) 135, 185, 1039, 1334
DpnI GATC 6 cut(s) 57, 277, 331, 423, 825, 968
DpnII GATC 6 cut(s) 55, 275, 329, 421, 823, 966
DrdI GACNNNNNNGTC 1 cut(s) 681
DseDI GACNNNNNNGTC 1 cut(s) 681
Eco130I CCWWGG 3 cut(s) 798, 1068, 1143
Eco31I GGTCTC 1 cut(s) 108
Eco32I GATATC 2 cut(s) 717, 759
Eco47I GGWCC 1 cut(s) 683
Eco57I CTGAAG 2 cut(s) 447, 1358
Eco72I CACGTG 1 cut(s) 1076
EcoO109I RGGNCCY 1 cut(s) 683
EcoRII CCWGG 2 cut(s) 471, 654
EcoRV GATATC 2 cut(s) 717, 759
EcoT14I CCWWGG 3 cut(s) 798, 1068, 1143
ErhI CCWWGG 3 cut(s) 798, 1068, 1143
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 669
FauI CCCGC 1 cut(s) 761
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 5 cut(s) 387, 663, 1120, 1172, 1359
FokI GGATG 3 cut(s) 40, 896, 1182
Fsp4HI GCNGC 5 cut(s) 387, 663, 1120, 1172, 1359
FspBI CTAG 1 cut(s) 522
GlaI GCGC 2 cut(s) 1309, 1379
GluI GCNGC 5 cut(s) 387, 663, 1120, 1172, 1359
GsaI CCCAGC 1 cut(s) 450
HaeII RGCGCY 1 cut(s) 1311
HapII CCGG 1 cut(s) 265
HhaI GCGC 2 cut(s) 1310, 1380
Hin6I GCGC 2 cut(s) 1308, 1378
HinP1I GCGC 2 cut(s) 1308, 1378
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 3 cut(s) 1018, 1273, 1326
HinfI GANTC 4 cut(s) 122, 223, 941, 1346
HpaII CCGG 1 cut(s) 265
HphI GGTGA 2 cut(s) 98, 737
Hpy166II GTNNAC 4 cut(s) 182, 469, 959, 1370
Hpy188I TCNGA 8 cut(s) 12, 138, 280, 307, 334, 859, 1242, 1323
Hpy188III TCNNGA 6 cut(s) 59, 84, 425, 776, 933, 1367
Hpy8I GTNNAC 4 cut(s) 182, 469, 959, 1370
HpyAV CCTTC 2 cut(s) 90, 237
HpyCH4III ACNGT 4 cut(s) 179, 539, 737, 1300
HpyCH4IV ACGT 2 cut(s) 315, 1075
HpyCH4V TGCA 9 cut(s) 41, 65, 499, 815, 850, 887, 902, 1185, 1294
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 492, 602, 923, 1116
HpyF3I CTNAG 4 cut(s) 135, 185, 1039, 1334
HpySE526I ACGT 2 cut(s) 315, 1075
HspAI GCGC 2 cut(s) 1308, 1378
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 6 cut(s) 55, 275, 329, 421, 823, 966
LmnI GCTCC 6 cut(s) 342, 616, 659, 994, 1260, 1315
Lsp1109I GCAGC 3 cut(s) 373, 649, 1370
LweI GCATC 5 cut(s) 52, 373, 512, 874, 1044
MabI ACCWGGT 1 cut(s) 471
MaeI CTAG 1 cut(s) 522
MaeII ACGT 2 cut(s) 315, 1075
MaeIII GTNAC 4 cut(s) 539, 628, 731, 1133
MalI GATC 6 cut(s) 57, 277, 331, 423, 825, 968
MbiI CCGCTC 1 cut(s) 1171
MboI GATC 6 cut(s) 55, 275, 329, 421, 823, 966
MboII GAAGA 5 cut(s) 392, 431, 716, 834, 1240
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 191, 1265
MluCI AATT 8 cut(s) 87, 254, 394, 827, 878, 1092, 1163, 1253
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 2 cut(s) 307, 1319
MnlI CCTC 5 cut(s) 144, 693, 1015, 1072, 1387
MroXI GAANNNNTTC 1 cut(s) 1350
MseI TTAA 3 cut(s) 477, 1152, 1256
MslI CAYNNNNRTG 4 cut(s) 51, 194, 624, 635
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 2 cut(s) 473, 656
MvaI CCWGG 2 cut(s) 473, 656
MvnI CGCG 1 cut(s) 1089
MwoI GCNNNNNNNGC 5 cut(s) 38, 492, 602, 923, 1116
NcoI CCATGG 2 cut(s) 798, 1068
NdeI CATATG 1 cut(s) 607
NdeII GATC 6 cut(s) 55, 275, 329, 421, 823, 966
NlaIV GGNNCC 3 cut(s) 246, 685, 1105
NmuCI GTSAC 1 cut(s) 628
NspI RCATGY 2 cut(s) 499, 1178
PaeI GCATGC 2 cut(s) 499, 1178
PdmI GAANNNNTTC 1 cut(s) 1350
PfeI GAWTC 3 cut(s) 223, 941, 1346
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 5 cut(s) 388, 664, 1121, 1173, 1360
PleI GAGTC 1 cut(s) 130
PmaCI CACGTG 1 cut(s) 1076
PmlI CACGTG 1 cut(s) 1076
PpsI GAGTC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 1076
PpuMI RGGWCCY 1 cut(s) 683
PsiI TTATAA 1 cut(s) 1097
Psp5II RGGWCCY 1 cut(s) 683
Psp6I CCWGG 2 cut(s) 471, 654
PspCI CACGTG 1 cut(s) 1076
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 2 cut(s) 471, 654
PspN4I GGNNCC 3 cut(s) 246, 685, 1105
PspPI GGNCC 1 cut(s) 683
PspPPI RGGWCCY 1 cut(s) 683
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 2 cut(s) 165, 1248
RsaNI GTAC 2 cut(s) 164, 1247
RseI CAYNNNNRTG 4 cut(s) 51, 194, 624, 635
SaqAI TTAA 3 cut(s) 477, 1152, 1256
SatI GCNGC 5 cut(s) 387, 663, 1120, 1172, 1359
Sau3AI GATC 6 cut(s) 55, 275, 329, 421, 823, 966
Sau96I GGNCC 1 cut(s) 683
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 473, 656
SduI GDGCHC 2 cut(s) 191, 1265
SexAI ACCWGGT 1 cut(s) 471
SfaNI GCATC 5 cut(s) 52, 373, 512, 874, 1044
SfcI CTRYAG 1 cut(s) 921
SinI GGWCC 1 cut(s) 683
SmiMI CAYNNNNRTG 4 cut(s) 51, 194, 624, 635
SphI GCATGC 2 cut(s) 499, 1178
Sse9I AATT 8 cut(s) 87, 254, 394, 827, 878, 1092, 1163, 1253
SsiI CCGC 6 cut(s) 100, 389, 768, 1089, 1119, 1171
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 2 cut(s) 471, 654
StyI CCWWGG 3 cut(s) 798, 1068, 1143
TaaI ACNGT 4 cut(s) 179, 539, 737, 1300
TaiI ACGT 2 cut(s) 318, 1078
TaqI TCGA 3 cut(s) 58, 719, 1284
TasI AATT 8 cut(s) 87, 254, 394, 827, 878, 1092, 1163, 1253
TatI WGTACW 2 cut(s) 163, 1246
TauI GCSGC 2 cut(s) 1122, 1174
TfiI GAWTC 3 cut(s) 223, 941, 1346
Tru1I TTAA 3 cut(s) 477, 1152, 1256
Tru9I TTAA 3 cut(s) 477, 1152, 1256
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 3 cut(s) 386, 662, 1358
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 6 cut(s) 63, 219, 577, 795, 806, 1176
TspGWI ACGGA 2 cut(s) 206, 1401
VpaK11BI GGWCC 1 cut(s) 683
XapI RAATTY 2 cut(s) 394, 1163
XceI RCATGY 2 cut(s) 499, 1178
XmnI GAANNNNTTC 1 cut(s) 1350
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.