RLG00000035602

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007983
Physical Location & Seq
Forward (+)
69249830 .. 69252518
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035602

Sequence Viewer

Length: 1608 bp
ATGAAGCACCCACGAGCTTTCACTCTTGCGGCCGGAGTTTCTCGCCGGAAATTGCAAGACAGATCGTCCATCAATCTTCTGGTAGGTTCAGATGGAATTCATCACTGTCTGTGCTTATTGACACTTAAACTTGAAGACTGCGTGACGGTGGAATCAAATCTTGTTCTTCCTTTTCCACTGTGGAGTATAAGAAGCAAAATGTCGTTTCAGAACAAGGGTTTTTGGATGGCAAAGGGTGCAGGACATGAAAACGATCGAGATGCAACTTTTGGTAGCCCTTCAAGAATTGAACCAAAGCGGTCTCACCAATGGTTTGTAGATTCAGCTGAACCCCAGATGTTCCCCAACAAAAAGCAAGCAGTACATATTCCAAACAGTAAACTGAGCACGGATATGCCAAATGAAAATGTCGCTTGGGAGAATCCTTCCAGCTTTCAGTCGGTTCCCCATCAATTTATTGACCGGTTATTTGGATCGGATACAACAAGCTCTGCCAACTTTTCAGACAGGAACGTGTCTCCTGTTGGATCAGATGATTGGAGCATAAGAACAAAGGGTATTGATGACCAGTTCGGAGAAGATGCTGCGGTAAATTTGTCCATATCTCATGCTATTGAAGATCCTGAAGTATGTCTTGGCTTTGCTGGGATTAGGAAAATCAAAGTCAACCAGGTTAAGGACAGCGACAATGGCATGCATGCATCAAGGCAACATGGTTCTAGCAGGGAATATAACAGTAACCTGCCCACAAGTCAGGCATTTGATAGGACACACGAAACTAGTTTCATATCAGCAGGGCAGGCATATGATAAGGAGCATGGTAATGTCACACTAATGGGTCATGCCTACAACCAGGGAGCTGCCCATGTTAGAGCTTTAGGTCCCAACTATGGCAAGAGGGAAGAAAATGTGATATCAATGGGTGATGGTTACAGTAAAGGTAATGCCAATATGATATCTTTTGGCGGGTTTCCTGATGAACAAGATATGAACACCATGGGCAGGGCTGTTGCAAACTATGATCAATTATACCATGAGTCTTCTGTGCAAACATCAGAAACTGTGAATGAGAAAGAATTGGATGCAACAAATGTCAATGCAGTTGATAATACTGCTTCTGTAGCTAAATCAAGACCAGAATCAGCTTCCAAGAGTAAACCAGAGATCAAACCAATAAAGAAACAAGCTCCAAACAGCTTCCCCTCTAATGTTAGAAGCTTGATTTCAACTGGCATCTTAGATGGCGTTCCTGTAAAGTATGTCTCCATGGCACGTGAGGAACTTCGCGGAATTATAAAGGGTTCCAGCTATCTTTGCGGCTGTCAATCATGTAACTTTACCAAGGGGCTTAATGCTTATGAATTTGAGCGGCATGCTGGTTGCAAAACAAAACATCCAAACAATCACATATACTTTGAGAATGGGAAGACCATCTATCAGATAGTACAGGAATTAAGGAGCACCCCTGAAAGCTTGTTATTTGATACAATGCAAACAGTCTTTGGTGCTCCGATCAATCAGAAAGCTTTTCTCAGTTGGAAAGAATCCTTTCAAGCAGCAACCCGTGAACTTCAGCGCATTTACGGAAAGGAGGAACTGAACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

536

Amino Acids

59.39

Weight (kDa)

6.82

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 430 - 485 3.4e-13 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1295
Acc36I ACCTGC 1 cut(s) 750
AccBSI CCGCTC 1 cut(s) 1369
AccII CGCG 1 cut(s) 1287
AciI CCGC 7 cut(s) 29, 298, 587, 966, 1287, 1317, 1369
AclWI GGATC 3 cut(s) 481, 535, 614
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 3 cut(s) 96, 592, 1361
AcuI CTGAAG 2 cut(s) 645, 1556
AcvI CACGTG 1 cut(s) 1274
AfaI GTAC 2 cut(s) 363, 1446
AfiI CCNNNNNNNGG 3 cut(s) 676, 890, 1002
AflIII ACRYGT 1 cut(s) 513
AgeI ACCGGT 1 cut(s) 462
AgsI TTSAA 6 cut(s) 134, 282, 290, 617, 1227, 1553
AhdI GACNNNNNGTC 1 cut(s) 64
AhlI ACTAGT 1 cut(s) 779
AjnI CCWGG 2 cut(s) 669, 852
AjuI GAANNNNNNNTTGG 2 cut(s) 618, 650
Alw21I GWGCWC 3 cut(s) 389, 1463, 1510
Alw26I GTCTC 3 cut(s) 306, 522, 1267
AlwI GGATC 3 cut(s) 481, 535, 614
AlwNI CAGNNNCTG 1 cut(s) 1061
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 3 cut(s) 584, 860, 1556
ApoI RAATTY 3 cut(s) 96, 592, 1361
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AsiGI ACCGGT 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 1548
AspLEI GCGC 1 cut(s) 1578
AspS9I GGNCC 1 cut(s) 881
AsuHPI GGTGA 2 cut(s) 296, 935
AvaII GGWCC 1 cut(s) 881
BauI CACGAG 1 cut(s) 12
BbrPI CACGTG 1 cut(s) 1274
BbsI GAAGAC 3 cut(s) 141, 1032, 1433
Bbv12I GWGCWC 3 cut(s) 389, 1463, 1510
BbvI GCAGC 3 cut(s) 571, 847, 1568
BccI CCATC 7 cut(s) 77, 86, 220, 456, 920, 1235, 1439
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciT130I CCWGG 2 cut(s) 671, 854
BciVI GTATCC 1 cut(s) 472
BclI TGATCA 1 cut(s) 1021
BcoDI GTCTC 3 cut(s) 306, 522, 1267
BcuI ACTAGT 1 cut(s) 779
BfaI CTAG 2 cut(s) 720, 780
BfmI CTRYAG 1 cut(s) 1119
BfuAI ACCTGC 1 cut(s) 750
BfuI GTATCC 1 cut(s) 472
BisI GCNGC 6 cut(s) 30, 585, 861, 1318, 1370, 1557
BlsI GCNGC 6 cut(s) 31, 586, 862, 1319, 1371, 1558
Bme1390I CCNGG 2 cut(s) 671, 854
Bme18I GGWCC 1 cut(s) 881
BmeRI GACNNNNNGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 881
BmiI GGNNCC 3 cut(s) 444, 883, 1303
BmrFI CCNGG 2 cut(s) 671, 854
BmsI GCATC 5 cut(s) 250, 571, 710, 1072, 1242
BpiI GAAGAC 3 cut(s) 141, 1032, 1433
BsaAI YACGTR 1 cut(s) 1274
BsaI GGTCTC 1 cut(s) 306
BsaJI CCNNGG 4 cut(s) 853, 996, 1266, 1341
BsaWI WCCGGW 1 cut(s) 462
Bsc4I CCNNNNNNNGG 3 cut(s) 676, 890, 1002
Bse118I RCCGGY 1 cut(s) 462
Bse1I ACTGG 2 cut(s) 568, 1234
BseBI CCWGG 2 cut(s) 671, 854
BseDI CCNNGG 4 cut(s) 853, 996, 1266, 1341
BseGI GGATG 3 cut(s) 231, 1087, 1393
BseLI CCNNNNNNNGG 3 cut(s) 676, 890, 1002
BseMII CTCAG 2 cut(s) 374, 1546
BseNI ACTGG 2 cut(s) 568, 1234
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 3 cut(s) 571, 847, 1568
BseYI CCCAGC 1 cut(s) 644
BsgI GTGCAG 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 1287
Bsh1285I CGRYCG 2 cut(s) 33, 256
BshFI GGCC 1 cut(s) 32
BshTI ACCGGT 1 cut(s) 462
BsiEI CGRYCG 2 cut(s) 33, 256
BsiHKAI GWGCWC 3 cut(s) 389, 1463, 1510
BsiSI CCGG 3 cut(s) 33, 46, 463
BslFI GGGAC 1 cut(s) 867
BslI CCNNNNNNNGG 3 cut(s) 676, 890, 1002
BsmAI GTCTC 3 cut(s) 306, 522, 1267
BsmFI GGGAC 1 cut(s) 867
BsnI GGCC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 306
Bsp1286I GDGCHC 3 cut(s) 389, 1463, 1510
Bsp143I GATC 8 cut(s) 62, 253, 473, 527, 619, 1021, 1164, 1512
Bsp19I CCATGG 2 cut(s) 996, 1266
BspACI CCGC 7 cut(s) 29, 298, 587, 966, 1287, 1317, 1369
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 375, 1545
BspFNI CGCG 1 cut(s) 1287
BspLI GGNNCC 3 cut(s) 444, 883, 1303
BspMI ACCTGC 1 cut(s) 750
BspPI GGATC 3 cut(s) 481, 535, 614
BspTNI GGTCTC 1 cut(s) 306
BsrBI CCGCTC 1 cut(s) 1369
BsrFI RCCGGY 1 cut(s) 462
BsrI ACTGG 2 cut(s) 568, 1234
BssAI RCCGGY 1 cut(s) 462
BssECI CCNNGG 4 cut(s) 853, 996, 1266, 1341
BssMI GATC 8 cut(s) 62, 253, 473, 527, 619, 1021, 1164, 1512
BssSI CACGAG 1 cut(s) 12
BssT1I CCWWGG 3 cut(s) 996, 1266, 1341
Bst2BI CACGAG 1 cut(s) 12
Bst2UI CCWGG 2 cut(s) 671, 854
Bst4CI ACNGT 8 cut(s) 107, 148, 180, 377, 737, 935, 1063, 1498
BstAPI GCANNNNNTGC 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 1274
BstC8I GCNNGC 5 cut(s) 357, 695, 699, 801, 1374
BstDEI CTNAG 3 cut(s) 383, 1237, 1532
BstDSI CCRYGG 2 cut(s) 996, 1266
BstF5I GGATG 3 cut(s) 231, 1087, 1393
BstFNI CGCG 1 cut(s) 1287
BstHHI GCGC 1 cut(s) 1578
BstKTI GATC 8 cut(s) 65, 256, 476, 530, 622, 1024, 1167, 1515
BstMAI GTCTC 3 cut(s) 306, 522, 1267
BstMBI GATC 8 cut(s) 62, 253, 473, 527, 619, 1021, 1164, 1512
BstMCI CGRYCG 2 cut(s) 33, 256
BstMWI GCNNNNNNNGC 5 cut(s) 236, 690, 800, 1121, 1314
BstNI CCWGG 2 cut(s) 671, 854
BstNSI RCATGY 3 cut(s) 697, 701, 1376
BstSCI CCNGG 2 cut(s) 669, 852
BstSFI CTRYAG 1 cut(s) 1119
BstUI CGCG 1 cut(s) 1287
BstV1I GCAGC 3 cut(s) 571, 847, 1568
BstV2I GAAGAC 3 cut(s) 141, 1032, 1433
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
BstZI CGGCCG 1 cut(s) 30
BsuI GTATCC 1 cut(s) 472
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 2 cut(s) 996, 1266
BtsCI GGATG 3 cut(s) 231, 1087, 1393
BtsIMutI CAGTG 2 cut(s) 103, 176
BveI ACCTGC 1 cut(s) 750
Cac8I GCNNGC 5 cut(s) 357, 695, 699, 801, 1374
CaiI CAGNNNCTG 1 cut(s) 1061
CfoI GCGC 1 cut(s) 1578
Cfr10I RCCGGY 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 881
CsiI ACCWGGT 1 cut(s) 669
Csp6I GTAC 2 cut(s) 362, 1445
CspAI ACCGGT 1 cut(s) 462
CviQI GTAC 2 cut(s) 362, 1445
DdeI CTNAG 3 cut(s) 383, 1237, 1532
DpnI GATC 8 cut(s) 64, 255, 475, 529, 621, 1023, 1166, 1514
DpnII GATC 8 cut(s) 62, 253, 473, 527, 619, 1021, 1164, 1512
DriI GACNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 30
EagI CGGCCG 1 cut(s) 30
Eam1105I GACNNNNNGTC 1 cut(s) 64
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 3 cut(s) 996, 1266, 1341
Eco31I GGTCTC 1 cut(s) 306
Eco32I GATATC 2 cut(s) 915, 957
Eco47I GGWCC 1 cut(s) 881
Eco52I CGGCCG 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 645, 1556
Eco72I CACGTG 1 cut(s) 1274
EcoO109I RGGNCCY 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 669, 852
EcoRV GATATC 2 cut(s) 915, 957
EcoT14I CCWWGG 3 cut(s) 996, 1266, 1341
EcoT22I ATGCAT 2 cut(s) 699, 703
ErhI CCWWGG 3 cut(s) 996, 1266, 1341
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 1 cut(s) 867
FauI CCCGC 1 cut(s) 959
FauNDI CATATG 1 cut(s) 805
FbaI TGATCA 1 cut(s) 1021
Fnu4HI GCNGC 6 cut(s) 30, 585, 861, 1318, 1370, 1557
FokI GGATG 3 cut(s) 238, 1094, 1380
Fsp4HI GCNGC 6 cut(s) 30, 585, 861, 1318, 1370, 1557
FspBI CTAG 2 cut(s) 720, 780
GlaI GCGC 1 cut(s) 1577
GluI GCNGC 6 cut(s) 30, 585, 861, 1318, 1370, 1557
GsaI CCCAGC 1 cut(s) 648
HaeIII GGCC 1 cut(s) 32
HapII CCGG 3 cut(s) 33, 46, 463
HhaI GCGC 1 cut(s) 1578
Hin6I GCGC 1 cut(s) 1576
HinP1I GCGC 1 cut(s) 1576
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 3 cut(s) 1216, 1471, 1524
HinfI GANTC 6 cut(s) 152, 320, 421, 1037, 1139, 1544
HpaII CCGG 3 cut(s) 33, 46, 463
HphI GGTGA 2 cut(s) 296, 935
Hpy166II GTNNAC 4 cut(s) 380, 667, 1157, 1568
Hpy188III TCNNGA 5 cut(s) 257, 282, 623, 974, 1131
Hpy8I GTNNAC 4 cut(s) 380, 667, 1157, 1568
HpyAV CCTTC 2 cut(s) 288, 435
HpyCH4III ACNGT 8 cut(s) 107, 148, 180, 377, 737, 935, 1063, 1498
HpyCH4IV ACGT 2 cut(s) 513, 1273
HpyF10VI GCNNNNNNNGC 5 cut(s) 236, 690, 800, 1121, 1314
HpyF3I CTNAG 3 cut(s) 383, 1237, 1532
HpySE526I ACGT 2 cut(s) 513, 1273
HspAI GCGC 1 cut(s) 1576
Ksp22I TGATCA 1 cut(s) 1021
Kzo9I GATC 8 cut(s) 62, 253, 473, 527, 619, 1021, 1164, 1512
LmnI GCTCC 6 cut(s) 540, 814, 857, 1192, 1458, 1513
Lsp1109I GCAGC 3 cut(s) 571, 847, 1568
LweI GCATC 5 cut(s) 250, 571, 710, 1072, 1242
MabI ACCWGGT 1 cut(s) 669
MaeI CTAG 2 cut(s) 720, 780
MaeII ACGT 2 cut(s) 513, 1273
MaeIII GTNAC 5 cut(s) 142, 737, 826, 929, 1331
MalI GATC 8 cut(s) 64, 255, 475, 529, 621, 1023, 1166, 1514
MbiI CCGCTC 1 cut(s) 1369
MboI GATC 8 cut(s) 62, 253, 473, 527, 619, 1021, 1164, 1512
MboII GAAGA 8 cut(s) 68, 146, 158, 590, 629, 914, 1032, 1438
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 3 cut(s) 389, 1463, 1510
MlyI GAGTC 1 cut(s) 1046
MmeI TCCRAC 2 cut(s) 505, 1517
MnlI CCTC 4 cut(s) 891, 1213, 1270, 1585
Mph1103I ATGCAT 2 cut(s) 699, 703
MroXI GAANNNNTTC 1 cut(s) 1548
MseI TTAA 4 cut(s) 126, 675, 1350, 1454
MslI CAYNNNNRTG 3 cut(s) 392, 822, 833
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 3 cut(s) 33, 46, 463
MspR9I CCNGG 2 cut(s) 671, 854
MvaI CCWGG 2 cut(s) 671, 854
MvnI CGCG 1 cut(s) 1287
MwoI GCNNNNNNNGC 5 cut(s) 236, 690, 800, 1121, 1314
NcoI CCATGG 2 cut(s) 996, 1266
NdeI CATATG 1 cut(s) 805
NdeII GATC 8 cut(s) 62, 253, 473, 527, 619, 1021, 1164, 1512
NlaIV GGNNCC 3 cut(s) 444, 883, 1303
NmuCI GTSAC 2 cut(s) 142, 826
NsiI ATGCAT 2 cut(s) 699, 703
NspI RCATGY 3 cut(s) 697, 701, 1376
PaeI GCATGC 3 cut(s) 697, 701, 1376
PdmI GAANNNNTTC 1 cut(s) 1548
PfeI GAWTC 5 cut(s) 152, 320, 421, 1139, 1544
PinAI ACCGGT 1 cut(s) 462
PkrI GCNGC 6 cut(s) 31, 586, 862, 1319, 1371, 1558
Ple19I CGATCG 1 cut(s) 256
PleI GAGTC 1 cut(s) 1045
PmaCI CACGTG 1 cut(s) 1274
PmlI CACGTG 1 cut(s) 1274
PpsI GAGTC 1 cut(s) 1045
Ppu21I YACGTR 1 cut(s) 1274
PpuMI RGGWCCY 1 cut(s) 881
PsiI TTATAA 1 cut(s) 1295
Psp5II RGGWCCY 1 cut(s) 881
Psp6I CCWGG 2 cut(s) 669, 852
PspCI CACGTG 1 cut(s) 1274
PspFI CCCAGC 1 cut(s) 644
PspGI CCWGG 2 cut(s) 669, 852
PspN4I GGNNCC 3 cut(s) 444, 883, 1303
PspPI GGNCC 1 cut(s) 881
PspPPI RGGWCCY 1 cut(s) 881
PstNI CAGNNNCTG 1 cut(s) 1061
PsuI RGATCY 1 cut(s) 619
PvuI CGATCG 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 2 cut(s) 363, 1446
RsaNI GTAC 2 cut(s) 362, 1445
RseI CAYNNNNRTG 3 cut(s) 392, 822, 833
SaqAI TTAA 4 cut(s) 126, 675, 1350, 1454
SatI GCNGC 6 cut(s) 30, 585, 861, 1318, 1370, 1557
Sau3AI GATC 8 cut(s) 62, 253, 473, 527, 619, 1021, 1164, 1512
Sau96I GGNCC 1 cut(s) 881
SchI GAGTC 1 cut(s) 1046
ScrFI CCNGG 2 cut(s) 671, 854
SduI GDGCHC 3 cut(s) 389, 1463, 1510
SexAI ACCWGGT 1 cut(s) 669
SfaNI GCATC 5 cut(s) 250, 571, 710, 1072, 1242
SfcI CTRYAG 1 cut(s) 1119
SinI GGWCC 1 cut(s) 881
SmiMI CAYNNNNRTG 3 cut(s) 392, 822, 833
SpeI ACTAGT 1 cut(s) 779
SphI GCATGC 3 cut(s) 697, 701, 1376
SsiI CCGC 7 cut(s) 29, 298, 587, 966, 1287, 1317, 1369
SspMI CTAG 2 cut(s) 720, 780
StyD4I CCNGG 2 cut(s) 669, 852
StyI CCWWGG 3 cut(s) 996, 1266, 1341
TaaI ACNGT 8 cut(s) 107, 148, 180, 377, 737, 935, 1063, 1498
TaiI ACGT 2 cut(s) 516, 1276
TaqI TCGA 1 cut(s) 256
TatI WGTACW 2 cut(s) 361, 1444
TauI GCSGC 3 cut(s) 32, 1320, 1372
TfiI GAWTC 5 cut(s) 152, 320, 421, 1139, 1544
Tru1I TTAA 4 cut(s) 126, 675, 1350, 1454
Tru9I TTAA 4 cut(s) 126, 675, 1350, 1454
TscAI CASTG 2 cut(s) 110, 183
TseFI GTSAC 2 cut(s) 142, 826
TseI GCWGC 3 cut(s) 584, 860, 1556
Tsp45I GTSAC 2 cut(s) 142, 826
TspDTI ATGAA 8 cut(s) 17, 89, 261, 417, 775, 993, 1004, 1374
TspGWI ACGGA 2 cut(s) 404, 1599
TspRI CASTG 2 cut(s) 110, 183
VpaK11BI GGWCC 1 cut(s) 881
XapI RAATTY 3 cut(s) 96, 592, 1361
XceI RCATGY 3 cut(s) 697, 701, 1376
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 1548
XspI CTAG 2 cut(s) 720, 780
Zsp2I ATGCAT 2 cut(s) 699, 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.