Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007983

Physical Location & Seq

Genomic Coordinates Reverse (-)

5658808 .. 5661691

Gene Structure 2884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G083800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGTCTTTCCAGAACAAGGGATTTTGGATGCCCAAGGGTGCTGGACTTGTTAATGATGGAGATGCAACTTACGGCAACCCTTCAAGAATTGAGCCAAAGCGGCCTCATCAATGGTTTGTAGATGCTGCTGAACCAGAGCTGTTCCCGAACAAGAAGCAAGCAGTACATATTCCAAACAGCAAATTGGGCTCCGGAATGTCAAATGAAAATGTCTCTTCTTGGGAGAACGCTTCTAGCTTCCAGTCAGTTCCACACCAATTCATTGACCGGTTATTTGGATCTGATACAGCAAGCTCTGTCAACTTTGCCGAGAGGAACATATCTCCTGTCGGATCAGATAATTGGAATATAAGAAAGGGTATCGATGACCAGTTTGGAGAAGATTCGCCTGTTAGTTTGTCAGTATCTCATGCCATGGAAGATCCTGAAACATGTCTTAACTATGCTGGAATTAGAAAAGTTAAAGTCAATCAGGTCAGGGACAGTGACAATGGTATGCATGCTTCACGGGAACATGGTTCTAATAGGGGAAGTAACAGTAACCTGTCCTCAAGTCAGGCATTTGATAGGGTAAATGAAACTGCTTTTTTATCAGTGGGGCAGGCCTATGATAAGGAGCATGGCAGTGTCACACTAATAGGACATCCCTACAACCACGGGGATGCCCATGTCAGACCAATAGATACCAACTATGGCAAGGGAGATGAAAATGCAATATCAGTTGGTGACAATTGCAGTAAAGGGAATGCTAATATGATATCTTTTGGTGGGTTTCCTGACGAACAAGATATTATCCCCATAGGCAGGCCTGTTGGCAACTATGATCAATTGTACCATCCAGATTCAGTTCAAACATTGGAAACTTCATACGAGAAGGACTTGGATGCATCAAATGCCAGTGCGGTTGATAATACTGCTTCTTTAGCTAAACCAAGACTGGAATCAGTTTCTAAGAATAAACCTGAGATCAAACCGTCAAGGAAACCAGCTCCAAACAGCTTTCCCTCAAATGTTAGAAGCTTGATTTCAACTGGCATGCTTGACGGGGTTCCTGTAAAATATGTTTCCTTGGCACGTGAGGGTTATATCCCTCCACGTAACAAGGAGCTTCGCGGAATTATAAAAGGTGTTGGCTACCTATGTGGGTGTCAATCATGTAATTATGCTAAGGTTCTAAATGCATATGAGTTTGAGCGCCATGCTGGTTGCAAAACAAAACATCCAAACAATCACATATACTTTGAGAACGGGAAGACCATCTATCAGATAGTGCAAGAATTAAGGAGCACCCCTGAGAGCTTGTTATTTGATACACTTCAAACTGTTTTTGGTGCTCCGATCAATCAGAAATCTTTTCACAGCTGGAAAGAATCATTTCAAGCAGCAACTCGTGAACTTCAGCGTATTTATGGAAAGGAGGAACTGAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas

Protein Analysis

478

Amino Acids

52.68

Weight (kDa)

6.22

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59830 AT5G59830 AT5G59830
fragaria_vesca	FvH4_3g35080 FvH4_3g35080
malus_domestica	MD03G1099200.v1.1 MD11G1113100.v1.1
prunus_persica	Prupe.6G083800_v2.0.a1 Prupe.6G083800_v2.0.a1 Prupe.6G083800_v2.0.a1 Prupe.6G083800_v2.0.a1
pyrus_communis	pycom03g08150 pycom11g09540
rosa_chinensis	RchiOBHm_Chr5g0063081
rosa_laevigata	RLG00000035602
rosa_multiflora	Rmu_sc0005045.1_g000041
rosa_roxburghii	Rroxscaffold_1G00017570
rosa_rugosa	Rorug05G0354100 Rorug05G0354200
rosa_samantha	Rh5AG414600 Rh5BG429500 Rh5CG452900 Rh5DG443000
rosa_wichuraiana	Rw5G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
AccII	CGCG	1 cut(s)	1113
AccIII	TCCGGA	1 cut(s)	191
AciI	CCGC	3 cut(s)	100, 902, 1113
AclWI	GGATC	3 cut(s)	286, 340, 416
AcuI	CTGAAG	1 cut(s)	1382
AcvI	CACGTG	1 cut(s)	1076
AfaI	GTAC	2 cut(s)	165, 833
AfiI	CCNNNNNNNGG	2 cut(s)	16, 804
AflIII	ACRYGT	1 cut(s)	431
AgeI	ACCGGT	1 cut(s)	267
AgsI	TTSAA	5 cut(s)	84, 851, 1029, 1319, 1379
Alw21I	GWGCWC	2 cut(s)	1289, 1336
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	286, 340, 416
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	3 cut(s)	101, 603, 806
ApeKI	GCWGC	2 cut(s)	125, 1382
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AsiGI	ACCGGT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	1374
AspLEI	GCGC	1 cut(s)	1197
AsuHPI	GGTGA	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	487, 519
BauI	CACGAG	1 cut(s)	1389
BbrPI	CACGTG	1 cut(s)	1076
BbsI	GAAGAC	1 cut(s)	1259
Bbv12I	GWGCWC	2 cut(s)	1289, 1336
BbvI	GCAGC	2 cut(s)	112, 1394
BccI	CCATC	3 cut(s)	50, 843, 1265
BceAI	ACGGC	1 cut(s)	88
BclI	TGATCA	1 cut(s)	823
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	1198
BglI	GCCNNNNNGGC	1 cut(s)	100
BisI	GCNGC	3 cut(s)	101, 126, 1383
BlsI	GCNGC	3 cut(s)	102, 127, 1384
BmiI	GGNNCC	2 cut(s)	190, 1050
BmsI	GCATC	6 cut(s)	18, 52, 112, 652, 874, 896
BpiI	GAAGAC	1 cut(s)	1259
Bpu10I	CCTNAGC	1 cut(s)	1167
BpuEI	CTTGAG	1 cut(s)	535
Bsa29I	ATCGAT	1 cut(s)	363
BsaAI	YACGTR	2 cut(s)	1076, 1097
BsaJI	CCNNGG	4 cut(s)	33, 414, 655, 1068
BsaWI	WCCGGW	2 cut(s)	191, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 804
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	5 cut(s)	241, 370, 897, 942, 1036
BseAI	TCCGGA	1 cut(s)	191
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	4 cut(s)	33, 414, 655, 1068
BseGI	GGATG	6 cut(s)	33, 643, 667, 835, 889, 1219
BseLI	CCNNNNNNNGG	2 cut(s)	16, 804
BseMII	CTCAG	2 cut(s)	954, 1284
BseNI	ACTGG	5 cut(s)	241, 370, 897, 942, 1036
BseXI	GCAGC	2 cut(s)	112, 1394
Bsh1236I	CGCG	1 cut(s)	1113
BshFI	GGCC	3 cut(s)	103, 605, 808
BshTI	ACCGGT	1 cut(s)	267
BshVI	ATCGAT	1 cut(s)	363
BsiHKAI	GWGCWC	2 cut(s)	1289, 1336
BsiSI	CCGG	2 cut(s)	192, 268
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	2 cut(s)	16, 804
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	494
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	3 cut(s)	103, 605, 808
Bsp1286I	GDGCHC	3 cut(s)	191, 1289, 1336
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	6 cut(s)	278, 332, 421, 823, 966, 1338
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	3 cut(s)	100, 902, 1113
BspANI	GGCC	3 cut(s)	103, 605, 808
BspCNI	CTCAG	2 cut(s)	955, 1285
BspDI	ATCGAT	1 cut(s)	363
BspEI	TCCGGA	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	1113
BspLI	GGNNCC	2 cut(s)	190, 1050
BspPI	GGATC	3 cut(s)	286, 340, 416
BsrFI	RCCGGY	1 cut(s)	267
BsrI	ACTGG	5 cut(s)	241, 370, 897, 942, 1036
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	4 cut(s)	33, 414, 655, 1068
BssMI	GATC	6 cut(s)	278, 332, 421, 823, 966, 1338
BssSI	CACGAG	1 cut(s)	1389
BssT1I	CCWWGG	3 cut(s)	33, 414, 1068
Bst2BI	CACGAG	1 cut(s)	1389
Bst4CI	ACNGT	4 cut(s)	485, 539, 975, 1324
Bst6I	CTCTTC	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstBAI	YACGTR	2 cut(s)	1076, 1097
BstC8I	GCNNGC	6 cut(s)	159, 292, 501, 603, 806, 1037
BstDEI	CTNAG	4 cut(s)	951, 963, 1167, 1293
BstDSI	CCRYGG	2 cut(s)	414, 655
BstF5I	GGATG	6 cut(s)	33, 643, 667, 835, 889, 1219
BstFNI	CGCG	1 cut(s)	1113
BstH2I	RGCGCY	1 cut(s)	1198
BstHHI	GCGC	1 cut(s)	1197
BstKTI	GATC	6 cut(s)	281, 335, 424, 826, 969, 1341
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	6 cut(s)	278, 332, 421, 823, 966, 1338
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 186, 893, 923
BstNSI	RCATGY	3 cut(s)	435, 503, 1039
BstUI	CGCG	1 cut(s)	1113
BstV1I	GCAGC	2 cut(s)	112, 1394
BstV2I	GAAGAC	1 cut(s)	1259
BstX2I	RGATCY	2 cut(s)	278, 421
BstYI	RGATCY	2 cut(s)	278, 421
Bsu15I	ATCGAT	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	103, 605, 808
BsuTUI	ATCGAT	1 cut(s)	363
BtgI	CCRYGG	2 cut(s)	414, 655
BtsCI	GGATG	6 cut(s)	33, 643, 667, 835, 889, 1219
BtsI	GCAGTG	1 cut(s)	631
BtsIMutI	CAGTG	4 cut(s)	490, 600, 631, 904
Cac8I	GCNNGC	6 cut(s)	159, 292, 501, 603, 806, 1037
CfoI	GCGC	1 cut(s)	1197
Cfr10I	RCCGGY	1 cut(s)	267
ClaI	ATCGAT	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	164, 832
CspAI	ACCGGT	1 cut(s)	267
CviQI	GTAC	2 cut(s)	164, 832
DdeI	CTNAG	4 cut(s)	951, 963, 1167, 1293
DpnI	GATC	6 cut(s)	280, 334, 423, 825, 968, 1340
DpnII	GATC	6 cut(s)	278, 332, 421, 823, 966, 1338
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco130I	CCWWGG	3 cut(s)	33, 414, 1068
Eco147I	AGGCCT	2 cut(s)	605, 808
Eco24I	GRGCYC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	759
Eco57I	CTGAAG	1 cut(s)	1382
Eco72I	CACGTG	1 cut(s)	1076
EcoRV	GATATC	1 cut(s)	759
EcoT14I	CCWWGG	3 cut(s)	33, 414, 1068
EcoT22I	ATGCAT	3 cut(s)	501, 889, 1183
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	3 cut(s)	33, 414, 1068
FaqI	GGGAC	1 cut(s)	494
FauNDI	CATATG	1 cut(s)	1183
FbaI	TGATCA	1 cut(s)	823
Fnu4HI	GCNGC	3 cut(s)	101, 126, 1383
FokI	GGATG	6 cut(s)	40, 630, 674, 822, 896, 1206
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	101, 126, 1383
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	1196
GluI	GCNGC	3 cut(s)	101, 126, 1383
HaeII	RGCGCY	1 cut(s)	1198
HaeIII	GGCC	3 cut(s)	103, 605, 808
HapII	CCGG	2 cut(s)	192, 268
HhaI	GCGC	1 cut(s)	1197
Hin6I	GCGC	1 cut(s)	1195
HinP1I	GCGC	1 cut(s)	1195
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	1018
HinfI	GANTC	4 cut(s)	383, 842, 941, 1370
HpaII	CCGG	2 cut(s)	192, 268
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	2 cut(s)	301, 1394
Hpy188I	TCNGA	7 cut(s)	283, 332, 337, 674, 1266, 1338, 1347
Hpy188III	TCNNGA	8 cut(s)	10, 84, 145, 192, 425, 776, 839, 1391
Hpy8I	GTNNAC	2 cut(s)	301, 1394
HpyAV	CCTTC	2 cut(s)	90, 868
HpyCH4III	ACNGT	4 cut(s)	485, 539, 975, 1324
HpyCH4IV	ACGT	2 cut(s)	1075, 1096
HpyCH4V	TGCA	8 cut(s)	65, 499, 713, 735, 887, 1181, 1209, 1273
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 186, 893, 923
HpyF3I	CTNAG	4 cut(s)	951, 963, 1167, 1293
HpySE526I	ACGT	2 cut(s)	1075, 1096
HspAI	GCGC	1 cut(s)	1195
Kpn2I	TCCGGA	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	6 cut(s)	278, 332, 421, 823, 966, 1338
LmnI	GCTCC	6 cut(s)	194, 616, 994, 1105, 1284, 1339
Lsp1109I	GCAGC	2 cut(s)	112, 1394
LweI	GCATC	6 cut(s)	18, 52, 112, 652, 874, 896
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	2 cut(s)	1075, 1096
MaeIII	GTNAC	6 cut(s)	485, 533, 539, 628, 725, 1097
MalI	GATC	6 cut(s)	280, 334, 423, 825, 968, 1340
MboI	GATC	6 cut(s)	278, 332, 421, 823, 966, 1338
MboII	GAAGA	4 cut(s)	207, 392, 431, 1264
MfeI	CAATTG	2 cut(s)	730, 827
MflI	RGATCY	2 cut(s)	278, 421
MhlI	GDGCHC	3 cut(s)	191, 1289, 1336
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	7 cut(s)	114, 306, 559, 1015, 1072, 1101, 1411
Mph1103I	ATGCAT	3 cut(s)	501, 889, 1183
MroI	TCCGGA	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	1374
MseI	TTAA	4 cut(s)	51, 438, 462, 1280
MslI	CAYNNNNRTG	2 cut(s)	624, 660
MspA1I	CMGCKG	1 cut(s)	1362
MspI	CCGG	2 cut(s)	192, 268
MunI	CAATTG	2 cut(s)	730, 827
Mva1269I	GAATGC	1 cut(s)	751
MvnI	CGCG	1 cut(s)	1113
MwoI	GCNNNNNNNGC	4 cut(s)	100, 186, 893, 923
NcoI	CCATGG	1 cut(s)	414
NdeI	CATATG	1 cut(s)	1183
NdeII	GATC	6 cut(s)	278, 332, 421, 823, 966, 1338
NlaIV	GGNNCC	2 cut(s)	190, 1050
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	3 cut(s)	485, 628, 725
NsiI	ATGCAT	3 cut(s)	501, 889, 1183
NspI	RCATGY	3 cut(s)	435, 503, 1039
PaeI	GCATGC	2 cut(s)	503, 1039
PceI	AGGCCT	2 cut(s)	605, 808
PciI	ACATGT	1 cut(s)	431
PctI	GAATGC	1 cut(s)	751
PdmI	GAANNNNTTC	1 cut(s)	1374
PfeI	GAWTC	4 cut(s)	383, 842, 941, 1370
PinAI	ACCGGT	1 cut(s)	267
PkrI	GCNGC	3 cut(s)	102, 127, 1384
PmaCI	CACGTG	1 cut(s)	1076
PmlI	CACGTG	1 cut(s)	1076
Ppu21I	YACGTR	2 cut(s)	1076, 1097
PscI	ACATGT	1 cut(s)	431
PsiI	TTATAA	1 cut(s)	1121
PspCI	CACGTG	1 cut(s)	1076
PspN4I	GGNNCC	2 cut(s)	190, 1050
PsuI	RGATCY	2 cut(s)	278, 421
PvuII	CAGCTG	1 cut(s)	1362
RsaI	GTAC	2 cut(s)	165, 833
RsaNI	GTAC	2 cut(s)	164, 832
RseI	CAYNNNNRTG	2 cut(s)	624, 660
SaqAI	TTAA	4 cut(s)	51, 438, 462, 1280
SatI	GCNGC	3 cut(s)	101, 126, 1383
Sau3AI	GATC	6 cut(s)	278, 332, 421, 823, 966, 1338
SduI	GDGCHC	3 cut(s)	191, 1289, 1336
SfaNI	GCATC	6 cut(s)	18, 52, 112, 652, 874, 896
SmiMI	CAYNNNNRTG	2 cut(s)	624, 660
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
SphI	GCATGC	2 cut(s)	503, 1039
SseBI	AGGCCT	2 cut(s)	605, 808
SsiI	CCGC	3 cut(s)	100, 902, 1113
SspMI	CTAG	1 cut(s)	234
StuI	AGGCCT	2 cut(s)	605, 808
StyI	CCWWGG	3 cut(s)	33, 414, 1068
TaaI	ACNGT	4 cut(s)	485, 539, 975, 1324
TaiI	ACGT	2 cut(s)	1078, 1099
TaqI	TCGA	1 cut(s)	363
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	4 cut(s)	383, 842, 941, 1370
Tru1I	TTAA	4 cut(s)	51, 438, 462, 1280
Tru9I	TTAA	4 cut(s)	51, 438, 462, 1280
TscAI	CASTG	4 cut(s)	490, 600, 631, 904
TseFI	GTSAC	3 cut(s)	485, 628, 725
TseI	GCWGC	2 cut(s)	125, 1382
Tsp45I	GTSAC	3 cut(s)	485, 628, 725
TspDTI	ATGAA	5 cut(s)	219, 250, 591, 720, 855
TspRI	CASTG	4 cut(s)	490, 600, 631, 904
XceI	RCATGY	3 cut(s)	435, 503, 1039
XmnI	GAANNNNTTC	1 cut(s)	1374
XspI	CTAG	1 cut(s)	234
Zsp2I	ATGCAT	3 cut(s)	501, 889, 1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.