Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008778

Physical Location & Seq

Genomic Coordinates Reverse (-)

24197971 .. 24201415

Gene Structure 3445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGTGTTTTAATAACATTGAAACTGGTGATGAAGTGGAAACCGAGAGGCAAGTGTTTGGTTCATCTGAAGAAGATGAATTTCGAGTTGAAGATACTGCTAGAAATACCAACAATGTACAGATTTCTCAACAACAGCAGCAACCGCTAGCTCATGTTGTGAAGTGGGAGAGGTATCTCCCAGTTAGATCGCTTAAGGTTCTTCTGGTGGAGAATGATGACTCAACACGCCATATTGTTACTGCCCTTTTAAAGAATTGCAGCTATGAAGTTACTGCTGTTCCGGATGTCCTTGAAGCCTGGAGAATTCTAGAAGATGAGAAAAGTTGCATTGATCTTGTCTTAACAGAGGTTGACATGCCTGTGCATTCAGGAACCGGTCTGCTGTCCAAGATTATGAGCCATAAGACACTTAAGAACATCCCCGTCATAATGATGTCATCACATGATTCTATGGTTCTGGTCTTTAAGTGTTTGTCGAATGGTGCTGTTGATTTTCTCGTGAAACCCATTAGAAAGAACGAACTAAAGAATCTTTGGCAACATGTCTGGAGAAGATGTCACAGCTCTAGCGGAAGCGGAAGTGAGAGTGGAATACATGACAAGAAGTCGGTGAAACCTGAAAGCACCCAAGGGTCAGAAAATGATGCCAGCATCAGTGATGAACACAGGAATGAAAGTGGGAGTAGTGGTGGTTTGAGTAACCAAGATGGTGGGAGTGATAACGGGAGTGGAACTCAGAGTTCTTGGACAAAAAGAGCCAGTGATACTAAGAGCACCTCGCCTTCAAATCAATTTCCCGATGCACCCAACAAGAAAGGAACCTATGAAAATGGATGTGCACATGTTAATAGACTGAAGGAGGCTGAAGATCAGAAGGAACAAATAGGCACGGGATCACAGACAGGAATGTCTATGAGTAAGAAAGCTGAAGAACCAGGAGATCTTGAAAAGAATGCAAAGTATTCTGTTCAAGCTTTGGAGAGAAACAATGATGACACGCTGAATCGCTCTTCTGGTAACTCACAAGTAGAAAGCAAAGCACCTTCATCTAACCGAGAAGATTTGCAATCACTCGAGCAAACTCTGAAAAAAACAAGAGAGGATAGAGATTACAAAGTCGGTGATCGAAGTGTGTTGAGGCATTCAAATCTCTCTGCATTCTCAAAATACAATAATGGTGCTACTTCTGCTAAGAAGGCTCCAGAAGAAAATGTGGAAAGTTGTTCTCCTCATGACAGTCCTATTGCAAAACTGTTGGGTTCGAGTTCAAGCAGTGACAATCCTTTAAAGCAGCAGTCTAGTGGAAGTGACCGATGGGCACAAAGAGAAGCTGCTTTGATGAAGTTTCGCCTTAAACGTAAAGAGCGATGTTTTGAGAAAAAGGTTAGGTACCATAGCAGGAAGAAACTAGCTGAGCAACGGCCTCACGTCAAAGGTCAATTCATTCGCAAGAGGGATGATCATAAATCAGGAAGTGAAGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

495

Amino Acids

55.29

Weight (kDa)

7.24

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	66 - 177	3.5e-21	Response regulator receiver domain
CCT	PF06203	469 - 511	4e-15	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100
malus_domestica	MD01G1114400.v1.1 MD07G1182300.v1.1 MD07G1182500.v1.1
pyrus_communis	pycom01g14340 pycom07g17500
rosa_chinensis	RchiOBHm_Chr1g0364431
rosa_laevigata	RLG00000027480
rosa_multiflora	Rmu_sc0001342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291850 Rroxscaffold_4G00292280
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324400 Rh1BG287100 Rh1CG303700 Rh1DG318600
rosa_wichuraiana	Rw1G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	907
Acc65I	GGTACC	1 cut(s)	1389
AccB1I	GGYRCC	1 cut(s)	1389
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	3 cut(s)	143, 570, 576
AclWI	GGATC	1 cut(s)	901
AcsI	RAATTY	2 cut(s)	77, 303
AcuI	CTGAAG	4 cut(s)	87, 875, 885, 948
AfaI	GTAC	2 cut(s)	117, 1391
AflII	CTTAAG	2 cut(s)	191, 410
AflIII	ACRYGT	2 cut(s)	541, 841
AgeI	ACCGGT	1 cut(s)	374
AgsI	TTSAA	8 cut(s)	20, 89, 293, 786, 947, 971, 1146, 1269
AhdI	GACNNNNNGTC	1 cut(s)	604
AjiI	CACGTC	1 cut(s)	1429
AjnI	CCWGG	2 cut(s)	296, 934
AluBI	AGCT	7 cut(s)	149, 261, 564, 926, 974, 1331, 1412
AluI	AGCT	7 cut(s)	149, 261, 564, 926, 974, 1331, 1412
Alw21I	GWGCWC	2 cut(s)	776, 841
Alw44I	GTGCAC	1 cut(s)	837
AlwI	GGATC	1 cut(s)	901
Ama87I	CYCGRG	1 cut(s)	1073
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	1 cut(s)	1421
ApaLI	GTGCAC	1 cut(s)	837
ApeKI	GCWGC	4 cut(s)	136, 258, 1291, 1331
ApoI	RAATTY	2 cut(s)	77, 303
AsiGI	ACCGGT	1 cut(s)	374
Asp718I	GGTACC	1 cut(s)	1389
AsuHPI	GGTGA	3 cut(s)	38, 622, 1133
AsuNHI	GCTAGC	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	1073
BaeGI	GKGCMC	2 cut(s)	841, 1321
BanI	GGYRCC	1 cut(s)	1389
BauI	CACGAG	1 cut(s)	497
Bbv12I	GWGCWC	2 cut(s)	776, 841
BbvI	GCAGC	4 cut(s)	148, 270, 1303, 1318
BccI	CCATC	2 cut(s)	701, 1308
BceAI	ACGGC	1 cut(s)	1436
BciT130I	CCWGG	2 cut(s)	298, 936
BclI	TGATCA	1 cut(s)	1459
BfaI	CTAG	6 cut(s)	99, 146, 308, 567, 1299, 1409
BfrI	CTTAAG	2 cut(s)	191, 410
BglII	AGATCT	1 cut(s)	940
BisI	GCNGC	4 cut(s)	137, 259, 1292, 1332
BlpI	GCTNAGC	1 cut(s)	1413
BlsI	GCNGC	4 cut(s)	138, 260, 1293, 1333
Bme1390I	CCNGG	2 cut(s)	298, 936
BmeRI	GACNNNNNGTC	1 cut(s)	604
BmeT110I	CYCGRG	1 cut(s)	1073
BmgBI	CACGTC	1 cut(s)	1429
BmiI	GGNNCC	4 cut(s)	373, 820, 1200, 1391
BmrFI	CCNGG	2 cut(s)	298, 936
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	3 cut(s)	634, 660, 790
BmtI	GCTAGC	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	173
BplI	GAGNNNNNCTC	2 cut(s)	718, 750
BpmI	CTGGAG	3 cut(s)	319, 568, 1185
Bpu1102I	GCTNAGC	1 cut(s)	1413
BsaJI	CCNNGG	1 cut(s)	628
BsaWI	WCCGGW	2 cut(s)	280, 374
BsaXI	ACNNNNNCTCC	4 cut(s)	541, 571, 673, 703
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	3 cut(s)	28, 179, 759
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	298, 936
BseDI	CCNNGG	1 cut(s)	628
BseGI	GGATG	4 cut(s)	289, 417, 839, 1462
BseMII	CTCAG	2 cut(s)	749, 1404
BseNI	ACTGG	3 cut(s)	28, 179, 759
BseRI	GAGGAG	1 cut(s)	1218
BseSI	GKGCMC	2 cut(s)	841, 1321
BseXI	GCAGC	4 cut(s)	148, 270, 1303, 1318
BshFI	GGCC	1 cut(s)	1423
BshNI	GGYRCC	1 cut(s)	1389
BshTI	ACCGGT	1 cut(s)	374
BsiHKAI	GWGCWC	2 cut(s)	776, 841
BsiHKCI	CYCGRG	1 cut(s)	1073
BsiSI	CCGG	2 cut(s)	281, 375
BsmI	GAATGC	4 cut(s)	364, 958, 1141, 1157
BsnI	GGCC	1 cut(s)	1423
BsoBI	CYCGRG	1 cut(s)	1073
Bsp1286I	GDGCHC	3 cut(s)	776, 841, 1321
Bsp13I	TCCGGA	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	115
Bsp143I	GATC	7 cut(s)	185, 331, 868, 893, 940, 1123, 1459
Bsp1720I	GCTNAGC	1 cut(s)	1413
BspACI	CCGC	3 cut(s)	143, 570, 576
BspANI	GGCC	1 cut(s)	1423
BspCNI	CTCAG	2 cut(s)	748, 1405
BspEI	TCCGGA	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	1231
BspLI	GGNNCC	4 cut(s)	373, 820, 1200, 1391
BspOI	GCTAGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	901
BspQI	GCTCTTC	1 cut(s)	1015
BspT107I	GGYRCC	1 cut(s)	1389
BspTI	CTTAAG	2 cut(s)	191, 410
BsrFI	RCCGGY	1 cut(s)	374
BsrGI	TGTACA	1 cut(s)	115
BsrI	ACTGG	3 cut(s)	28, 179, 759
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	7 cut(s)	185, 331, 868, 893, 940, 1123, 1459
BssSI	CACGAG	1 cut(s)	497
BssT1I	CCWWGG	1 cut(s)	628
Bst2BI	CACGAG	1 cut(s)	497
Bst2UI	CCWGG	2 cut(s)	298, 936
Bst4CI	ACNGT	2 cut(s)	1238, 1254
Bst6I	CTCTTC	1 cut(s)	1015
BstAFI	CTTAAG	2 cut(s)	191, 410
BstAUI	TGTACA	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	147, 649
BstDEI	CTNAG	4 cut(s)	735, 768, 1191, 1413
BstF5I	GGATG	4 cut(s)	289, 417, 839, 1462
BstKTI	GATC	7 cut(s)	188, 334, 871, 896, 943, 1126, 1462
BstMBI	GATC	7 cut(s)	185, 331, 868, 893, 940, 1123, 1459
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 1187, 1196
BstNI	CCWGG	2 cut(s)	298, 936
BstNSI	RCATGY	3 cut(s)	358, 545, 845
BstSCI	CCNGG	2 cut(s)	296, 934
BstSLI	GKGCMC	2 cut(s)	841, 1321
BstV1I	GCAGC	4 cut(s)	148, 270, 1303, 1318
BstX2I	RGATCY	1 cut(s)	940
BstXI	CCANNNNNNTGG	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	940
BsuRI	GGCC	1 cut(s)	1423
BtgZI	GCGATG	1 cut(s)	1381
BtrI	CACGTC	1 cut(s)	1429
BtsCI	GGATG	4 cut(s)	289, 417, 839, 1462
BtsI	GCAGTG	1 cut(s)	1279
BtsIMutI	CAGTG	3 cut(s)	661, 766, 1279
Cac8I	GCNNGC	2 cut(s)	147, 649
CciI	TCATGA	1 cut(s)	1231
Cfr10I	RCCGGY	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	116, 1390
CspAI	ACCGGT	1 cut(s)	374
CviAII	CATG	7 cut(s)	152, 355, 443, 542, 596, 842, 1232
CviQI	GTAC	2 cut(s)	116, 1390
DdeI	CTNAG	4 cut(s)	735, 768, 1191, 1413
DpnI	GATC	7 cut(s)	187, 333, 870, 895, 942, 1125, 1461
DpnII	GATC	7 cut(s)	185, 331, 868, 893, 940, 1123, 1459
DraI	TTTAAA	2 cut(s)	249, 1287
DrdI	GACNNNNNNGTC	1 cut(s)	907
DriI	GACNNNNNGTC	1 cut(s)	604
DseDI	GACNNNNNNGTC	1 cut(s)	907
Eam1104I	CTCTTC	1 cut(s)	1015
Eam1105I	GACNNNNNGTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	1015
Eco130I	CCWWGG	1 cut(s)	628
Eco57I	CTGAAG	4 cut(s)	87, 875, 885, 948
Eco88I	CYCGRG	1 cut(s)	1073
EcoRI	GAATTC	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	296, 934
EcoT14I	CCWWGG	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	7 cut(s)	155, 358, 446, 545, 599, 845, 1235
FatI	CATG	7 cut(s)	151, 354, 442, 541, 595, 841, 1231
FbaI	TGATCA	1 cut(s)	1459
Fnu4HI	GCNGC	4 cut(s)	137, 259, 1292, 1332
FokI	GGATG	4 cut(s)	296, 404, 846, 1469
Fsp4HI	GCNGC	4 cut(s)	137, 259, 1292, 1332
FspBI	CTAG	6 cut(s)	99, 146, 308, 567, 1299, 1409
GluI	GCNGC	4 cut(s)	137, 259, 1292, 1332
GsuI	CTGGAG	3 cut(s)	319, 568, 1185
HaeIII	GGCC	1 cut(s)	1423
HapII	CCGG	2 cut(s)	281, 375
Hin1II	CATG	7 cut(s)	155, 358, 446, 545, 599, 845, 1235
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	972
HinfI	GANTC	4 cut(s)	218, 446, 529, 1003
HpaII	CCGG	2 cut(s)	281, 375
HphI	GGTGA	3 cut(s)	38, 622, 1133
Hpy166II	GTNNAC	2 cut(s)	352, 839
Hpy188I	TCNGA	5 cut(s)	67, 637, 738, 873, 1086
Hpy8I	GTNNAC	2 cut(s)	352, 839
HpyAV	CCTTC	5 cut(s)	792, 850, 868, 1053, 1189
HpyCH4III	ACNGT	2 cut(s)	1238, 1254
HpyCH4IV	ACGT	2 cut(s)	1357, 1428
HpyCH4V	TGCA	9 cut(s)	258, 327, 364, 803, 839, 956, 1066, 1157, 1247
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 1187, 1196
HpyF3I	CTNAG	4 cut(s)	735, 768, 1191, 1413
HpySE526I	ACGT	2 cut(s)	1357, 1428
Hsp92II	CATG	7 cut(s)	155, 358, 446, 545, 599, 845, 1235
Kpn2I	TCCGGA	1 cut(s)	280
KpnI	GGTACC	1 cut(s)	1393
Ksp22I	TGATCA	1 cut(s)	1459
Kzo9I	GATC	7 cut(s)	185, 331, 868, 893, 940, 1123, 1459
LguI	GCTCTTC	1 cut(s)	1015
LmnI	GCTCC	1 cut(s)	1204
Lsp1109I	GCAGC	4 cut(s)	148, 270, 1303, 1318
LweI	GCATC	3 cut(s)	634, 660, 790
MaeI	CTAG	6 cut(s)	99, 146, 308, 567, 1299, 1409
MaeII	ACGT	2 cut(s)	1357, 1428
MaeIII	GTNAC	7 cut(s)	235, 268, 557, 698, 1016, 1274, 1307
MalI	GATC	7 cut(s)	187, 333, 870, 895, 942, 1125, 1461
MboI	GATC	7 cut(s)	185, 331, 868, 893, 940, 1123, 1459
MfeI	CAATTG	1 cut(s)	1483
MflI	RGATCY	1 cut(s)	940
MhlI	GDGCHC	3 cut(s)	776, 841, 1321
MluCI	AATT	6 cut(s)	77, 253, 303, 791, 1439, 1483
MlyI	GAGTC	1 cut(s)	212
MroI	TCCGGA	1 cut(s)	280
MseI	TTAA	9 cut(s)	9, 192, 248, 341, 411, 465, 846, 1286, 1353
MslI	CAYNNNNRTG	3 cut(s)	359, 431, 669
MspCI	CTTAAG	2 cut(s)	191, 410
MspI	CCGG	2 cut(s)	281, 375
MspR9I	CCNGG	2 cut(s)	298, 936
MunI	CAATTG	1 cut(s)	1483
Mva1269I	GAATGC	4 cut(s)	364, 958, 1141, 1157
MvaI	CCWGG	2 cut(s)	298, 936
MwoI	GCNNNNNNNGC	3 cut(s)	142, 1187, 1196
NdeII	GATC	7 cut(s)	185, 331, 868, 893, 940, 1123, 1459
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	7 cut(s)	155, 358, 446, 545, 599, 845, 1235
NlaIV	GGNNCC	4 cut(s)	373, 820, 1200, 1391
NmuCI	GTSAC	3 cut(s)	557, 1274, 1307
NspI	RCATGY	3 cut(s)	358, 545, 845
PaeR7I	CTCGAG	1 cut(s)	1073
PagI	TCATGA	1 cut(s)	1231
PciI	ACATGT	2 cut(s)	541, 841
PciSI	GCTCTTC	1 cut(s)	1015
PcsI	WCGNNNNNNNCGW	2 cut(s)	1354, 1363
PctI	GAATGC	4 cut(s)	364, 958, 1141, 1157
PfeI	GAWTC	3 cut(s)	446, 529, 1003
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	4 cut(s)	138, 260, 1293, 1333
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PscI	ACATGT	2 cut(s)	541, 841
Psp6I	CCWGG	2 cut(s)	296, 934
PspGI	CCWGG	2 cut(s)	296, 934
PspN4I	GGNNCC	4 cut(s)	373, 820, 1200, 1391
PspXI	VCTCGAGB	1 cut(s)	1073
PsuI	RGATCY	1 cut(s)	940
RsaI	GTAC	2 cut(s)	117, 1391
RsaNI	GTAC	2 cut(s)	116, 1390
RseI	CAYNNNNRTG	3 cut(s)	359, 431, 669
SapI	GCTCTTC	1 cut(s)	1015
SaqAI	TTAA	9 cut(s)	9, 192, 248, 341, 411, 465, 846, 1286, 1353
SatI	GCNGC	4 cut(s)	137, 259, 1292, 1332
Sau3AI	GATC	7 cut(s)	185, 331, 868, 893, 940, 1123, 1459
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	298, 936
SduI	GDGCHC	3 cut(s)	776, 841, 1321
SfaNI	GCATC	3 cut(s)	634, 660, 790
Sfr274I	CTCGAG	1 cut(s)	1073
SlaI	CTCGAG	1 cut(s)	1073
SmiMI	CAYNNNNRTG	3 cut(s)	359, 431, 669
SmlI	CTYRAG	3 cut(s)	191, 410, 1073
SmoI	CTYRAG	3 cut(s)	191, 410, 1073
Sse9I	AATT	6 cut(s)	77, 253, 303, 791, 1439, 1483
SsiI	CCGC	3 cut(s)	143, 570, 576
SspMI	CTAG	6 cut(s)	99, 146, 308, 567, 1299, 1409
StyD4I	CCNGG	2 cut(s)	296, 934
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	2 cut(s)	1238, 1254
TaiI	ACGT	2 cut(s)	1360, 1431
TaqI	TCGA	5 cut(s)	82, 476, 1074, 1126, 1262
TaqII	GACCGA	1 cut(s)	1326
TasI	AATT	6 cut(s)	77, 253, 303, 791, 1439, 1483
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	3 cut(s)	446, 529, 1003
Tru1I	TTAA	9 cut(s)	9, 192, 248, 341, 411, 465, 846, 1286, 1353
Tru9I	TTAA	9 cut(s)	9, 192, 248, 341, 411, 465, 846, 1286, 1353
TscAI	CASTG	3 cut(s)	661, 766, 1279
TseFI	GTSAC	3 cut(s)	557, 1274, 1307
TseI	GCWGC	4 cut(s)	136, 258, 1291, 1331
Tsp45I	GTSAC	3 cut(s)	557, 1274, 1307
TspRI	CASTG	3 cut(s)	661, 766, 1279
Vha464I	CTTAAG	2 cut(s)	191, 410
VneI	GTGCAC	1 cut(s)	837
XapI	RAATTY	2 cut(s)	77, 303
XbaI	TCTAGA	1 cut(s)	307
XceI	RCATGY	3 cut(s)	358, 545, 845
XhoI	CTCGAG	1 cut(s)	1073
XspI	CTAG	6 cut(s)	99, 146, 308, 567, 1299, 1409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.