Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008778

Physical Location & Seq

Genomic Coordinates Reverse (-)

12214013 .. 12218001

Gene Structure 3989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00291850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGCCGACTGTTTGGCAAAAGACATCACCTTCCAAGTTCCAATTCATATCATATCTATTGAAGTTGGAGTTGGTAGTGCAAGTGAAAATGGTGTCCAGACTCAAAAAACTTTGTCGACAAGTGATGAAGAGTCAGACAAAAACACTGGCAGTAATCATGAGGATGACAATGAAATCATTGGGGTTAATGCTAGGGATGAAAGTGACAAAGGAAGTGGCACTGAGATTACTCAGGCGATTATTCGTTCAAGTCCTGAAGCATTTGGAAATGACTTGGTTCCTGCAGTTACAACAAGGGAGTGCGAAGGGCAGAATGAAGAGCTTGGTGCTGTTATCACAGGCGCAGACTTGGGTATGGGAGTTCCTAAAATTCCAAATCTGCAGCTTGAAGAACCAAAAGAGAAAGGCTTGATCAACATAGTTGTCACTAATAAAGACAAACTTTCTAAAATGAAGTCACTGAAAGAGGATGATAAGCTAAAGAAAGGCCAAGTGGAGCTCAACAATGAAAAACCAAATGAGCACTTGGAAAACCAAGCAGTTGATCTGATAGGTGTCACCACTAACAGTACCACTGACCCTCAGATGCAAAGTGGTATGTTTAACGTCCCATGTAGTGTCTCCAAAGTTCCAGGCATAAGAGATAAGGACATCAATGACAGCAAAGAAATTGCTTCCCTTGAGCTCAGTTTAAAGACACAGACAGATGCTCGAGATACTGGGTTCAGTGTCCATGACCAAAATGCTTTGAGACATTTGGACCTTTCAGCCCCCTCAGGGTACAATTTTCCTACAACTGCTAATCAGGCTGGAAGTGTGAAACTTGCTAGTCATTCTCCTCTAGATAGTATATCGGAGGAAGAAAAGGCCAAACTATTGCCTTTTTTTCTGTGTAACCTAACCAGCACTCCACTTTATCATTCCAATGACTGCAGTAACAACAACTGCATGGACTCCGCTACAAATGATTTCCTTACAGAACAAAAGGCAGTTGAGGACAAACCAGAGCTGAAATCAACAATCAAACATCTCCAGTCTTCCTCTGCCATCCAACCACACCATGATAGCCTTTTATCTTTTTCCCACCAGCCTATAATTCAAGGGAAGGCTGATGCTGCATTTGGTAGCACTATATTGGCACAAGCAAGGGGCATGAATCAGCAGGTCCAGGTGGAGCACCATCATCTCCATTACCACCATCACCACCATGTGCACAGCATACCCCAGCACCAGCAGATACCCAATCATGATGAGTCGTCTGGAAAAAATATGGCAGCGGAAGATCCATGCTTTGGGCCATCTGATGTGCTGGGTACACCGATAGAAGGGAATGTTGGTAATCACAGTTTGCATGGGAGTGAGTACTCTGGAAGTGACCATAGTAGTGATGAACAGAATATAAGTAGCTCTCCCATAGATTCTATAGGAGAAAAGAGGGAACCATCAGCCCAATTGAAGTTGGAAGCAAAAGTGGAGTTGATCAGAATCATGTATCAAAAAGAGAGGCTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

504

Amino Acids

54.89

Weight (kDa)

5.15

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100
malus_domestica	MD01G1114400.v1.1 MD07G1182300.v1.1 MD07G1182500.v1.1
pyrus_communis	pycom01g14340 pycom07g17500
rosa_chinensis	RchiOBHm_Chr1g0364431
rosa_laevigata	RLG00000027480
rosa_multiflora	Rmu_sc0001342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291850 Rroxscaffold_4G00292280
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324400 Rh1BG287100 Rh1CG303700 Rh1DG318600
rosa_wichuraiana	Rw1G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1153
AccB7I	CCANNNNNTGG	1 cut(s)	1292
AccI	GTMKAC	1 cut(s)	116
AciI	CCGC	2 cut(s)	957, 1277
AclWI	GGATC	1 cut(s)	1277
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	1210
AfaI	GTAC	4 cut(s)	571, 782, 1315, 1364
AfiI	CCNNNNNNNGG	3 cut(s)	777, 1292, 1325
AgsI	TTSAA	5 cut(s)	62, 249, 389, 1100, 1456
AjnI	CCWGG	2 cut(s)	631, 1167
AjuI	GAANNNNNNNTTGG	6 cut(s)	27, 54, 59, 86, 1317, 1349
AluBI	AGCT	7 cut(s)	322, 385, 478, 499, 685, 1009, 1407
AluI	AGCT	7 cut(s)	322, 385, 478, 499, 685, 1009, 1407
Alw21I	GWGCWC	5 cut(s)	501, 525, 687, 1179, 1215
Alw26I	GTCTC	2 cut(s)	625, 745
Alw44I	GTGCAC	1 cut(s)	1211
AlwI	GGATC	1 cut(s)	1277
Ama87I	CYCGRG	1 cut(s)	711
AoxI	GGCC	4 cut(s)	3, 487, 867, 1295
ApaLI	GTGCAC	1 cut(s)	1211
ApeKI	GCWGC	4 cut(s)	382, 1115, 1274, 1507
ApoI	RAATTY	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	3 cut(s)	760, 1165, 1295
AsuHPI	GGTGA	3 cut(s)	19, 550, 1193
AvaI	CYCGRG	1 cut(s)	711
AvaII	GGWCC	2 cut(s)	760, 1165
AxyI	CCTNAGG	1 cut(s)	775
BaeGI	GKGCMC	1 cut(s)	1215
BanII	GRGCYC	2 cut(s)	501, 687
BbsI	GAAGAC	1 cut(s)	1029
Bbv12I	GWGCWC	5 cut(s)	501, 525, 687, 1179, 1215
BbvI	GCAGC	4 cut(s)	394, 1102, 1286, 1494
BccI	CCATC	5 cut(s)	1055, 1188, 1206, 1306, 1450
BciT130I	CCWGG	2 cut(s)	633, 1169
BclI	TGATCA	2 cut(s)	411, 1479
BcoDI	GTCTC	2 cut(s)	625, 745
BfaI	CTAG	3 cut(s)	192, 828, 842
BfmI	CTRYAG	4 cut(s)	282, 380, 931, 1422
BfuAI	ACCTGC	1 cut(s)	1153
BisI	GCNGC	4 cut(s)	383, 1116, 1275, 1508
BlsI	GCNGC	4 cut(s)	384, 1117, 1276, 1509
BmcAI	AGTACT	1 cut(s)	1364
Bme1390I	CCNGG	2 cut(s)	633, 1169
Bme18I	GGWCC	2 cut(s)	760, 1165
BmeT110I	CYCGRG	1 cut(s)	711
BmgT120I	GGNCC	3 cut(s)	760, 1165, 1295
BmiI	GGNNCC	2 cut(s)	279, 1440
BmrFI	CCNGG	2 cut(s)	633, 1169
BmrI	ACTGGG	1 cut(s)	729
BmsI	GCATC	3 cut(s)	576, 697, 1102
BmuI	ACTGGG	1 cut(s)	729
BpiI	GAAGAC	1 cut(s)	1029
BpmI	CTGGAG	1 cut(s)	1016
BpuEI	CTTGAG	1 cut(s)	701
BsaBI	GATNNNNATC	1 cut(s)	1484
BsaXI	ACNNNNNCTCC	2 cut(s)	892, 922
Bsc4I	CCNNNNNNNGG	3 cut(s)	777, 1292, 1325
Bse1I	ACTGG	3 cut(s)	151, 724, 1033
Bse21I	CCTNAGG	1 cut(s)	775
Bse8I	GATNNNNATC	1 cut(s)	1484
BseBI	CCWGG	2 cut(s)	633, 1169
BseGI	GGATG	4 cut(s)	169, 202, 475, 1047
BseJI	GATNNNNATC	1 cut(s)	1484
BseLI	CCNNNNNNNGG	3 cut(s)	777, 1292, 1325
BseMII	CTCAG	5 cut(s)	213, 245, 596, 700, 789
BseNI	ACTGG	3 cut(s)	151, 724, 1033
BseRI	GAGGAG	1 cut(s)	828
BseSI	GKGCMC	1 cut(s)	1215
BseXI	GCAGC	4 cut(s)	394, 1102, 1286, 1494
BseYI	CCCAGC	2 cut(s)	1224, 1309
BshFI	GGCC	4 cut(s)	5, 489, 869, 1297
BsiHKAI	GWGCWC	5 cut(s)	501, 525, 687, 1179, 1215
BsiHKCI	CYCGRG	1 cut(s)	711
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	3 cut(s)	777, 1292, 1325
BsmAI	GTCTC	2 cut(s)	625, 745
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	4 cut(s)	5, 489, 869, 1297
BsoBI	CYCGRG	1 cut(s)	711
Bsp1286I	GDGCHC	5 cut(s)	501, 525, 687, 1179, 1215
Bsp143I	GATC	4 cut(s)	411, 544, 1282, 1479
BspACI	CCGC	2 cut(s)	957, 1277
BspANI	GGCC	4 cut(s)	5, 489, 869, 1297
BspCNI	CTCAG	5 cut(s)	214, 244, 595, 699, 788
BspHI	TCATGA	2 cut(s)	157, 1246
BspLI	GGNNCC	2 cut(s)	279, 1440
BspMAI	CTGCAG	3 cut(s)	286, 384, 935
BspMI	ACCTGC	1 cut(s)	1153
BspPI	GGATC	1 cut(s)	1277
BspQI	GCTCTTC	1 cut(s)	312
BsrI	ACTGG	3 cut(s)	151, 724, 1033
BssMI	GATC	4 cut(s)	411, 544, 1282, 1479
Bst2UI	CCWGG	2 cut(s)	633, 1169
Bst4CI	ACNGT	3 cut(s)	11, 569, 1346
Bst6I	CTCTTC	2 cut(s)	123, 312
BstDEI	CTNAG	5 cut(s)	222, 231, 582, 686, 775
BstF5I	GGATG	4 cut(s)	169, 202, 475, 1047
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	4 cut(s)	414, 547, 1285, 1482
BstMAI	GTCTC	2 cut(s)	625, 745
BstMBI	GATC	4 cut(s)	411, 544, 1282, 1479
BstMWI	GCNNNNNNNGC	2 cut(s)	806, 1115
BstNI	CCWGG	2 cut(s)	633, 1169
BstSCI	CCNGG	2 cut(s)	631, 1167
BstSFI	CTRYAG	4 cut(s)	282, 380, 931, 1422
BstSLI	GKGCMC	1 cut(s)	1215
BstV1I	GCAGC	4 cut(s)	394, 1102, 1286, 1494
BstV2I	GAAGAC	1 cut(s)	1029
BstX2I	RGATCY	1 cut(s)	1282
BstYI	RGATCY	1 cut(s)	1282
Bsu36I	CCTNAGG	1 cut(s)	775
BsuRI	GGCC	4 cut(s)	5, 489, 869, 1297
BtsCI	GGATG	4 cut(s)	169, 202, 475, 1047
BtsIMutI	CAGTG	5 cut(s)	144, 219, 458, 573, 733
BveI	ACCTGC	1 cut(s)	1153
CciI	TCATGA	2 cut(s)	157, 1246
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	3 cut(s)	760, 1165, 1295
Csp6I	GTAC	4 cut(s)	570, 781, 1314, 1363
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviQI	GTAC	4 cut(s)	570, 781, 1314, 1363
DdeI	CTNAG	5 cut(s)	222, 231, 582, 686, 775
DpnI	GATC	4 cut(s)	413, 546, 1284, 1481
DpnII	GATC	4 cut(s)	411, 544, 1282, 1479
DraI	TTTAAA	1 cut(s)	693
DraIII	CACNNNGTG	1 cut(s)	1210
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	123, 312
EarI	CTCTTC	2 cut(s)	123, 312
Ecl136II	GAGCTC	2 cut(s)	499, 685
Eco24I	GRGCYC	2 cut(s)	501, 687
Eco47I	GGWCC	2 cut(s)	760, 1165
Eco53kI	GAGCTC	2 cut(s)	499, 685
Eco57I	CTGAAG	1 cut(s)	276
Eco81I	CCTNAGG	1 cut(s)	775
Eco88I	CYCGRG	1 cut(s)	711
EcoICRI	GAGCTC	2 cut(s)	499, 685
EcoRII	CCWGG	2 cut(s)	631, 1167
EcoT38I	GRGCYC	2 cut(s)	501, 687
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FaqI	GGGAC	1 cut(s)	593
FbaI	TGATCA	2 cut(s)	411, 1479
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	4 cut(s)	383, 1116, 1275, 1508
FokI	GGATG	4 cut(s)	176, 209, 482, 1034
FriOI	GRGCYC	2 cut(s)	501, 687
Fsp4HI	GCNGC	4 cut(s)	383, 1116, 1275, 1508
FspBI	CTAG	3 cut(s)	192, 828, 842
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	4 cut(s)	383, 1116, 1275, 1508
GsaI	CCCAGC	2 cut(s)	1228, 1313
GsuI	CTGGAG	1 cut(s)	1016
HaeIII	GGCC	4 cut(s)	5, 489, 869, 1297
HhaI	GCGC	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	7 cut(s)	100, 131, 953, 1156, 1253, 1418, 1485
HphI	GGTGA	3 cut(s)	19, 550, 1193
Hpy166II	GTNNAC	3 cut(s)	117, 1213, 1316
Hpy188I	TCNGA	6 cut(s)	136, 549, 585, 856, 1303, 1484
Hpy188III	TCNNGA	8 cut(s)	97, 158, 254, 713, 842, 1247, 1260, 1368
Hpy8I	GTNNAC	3 cut(s)	117, 1213, 1316
HpyAV	CCTTC	4 cut(s)	40, 299, 1099, 1319
HpyCH4III	ACNGT	3 cut(s)	11, 569, 1346
HpyCH4IV	ACGT	1 cut(s)	606
HpyCH4V	TGCA	9 cut(s)	80, 284, 382, 589, 933, 948, 1118, 1213, 1351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	806, 1115
HpyF3I	CTNAG	5 cut(s)	222, 231, 582, 686, 775
HpySE526I	ACGT	1 cut(s)	606
HspAI	GCGC	1 cut(s)	342
Ksp22I	TGATCA	2 cut(s)	411, 1479
Kzo9I	GATC	4 cut(s)	411, 544, 1282, 1479
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	496, 1174
Lsp1109I	GCAGC	4 cut(s)	394, 1102, 1286, 1494
LweI	GCATC	3 cut(s)	576, 697, 1102
MaeI	CTAG	3 cut(s)	192, 828, 842
MaeII	ACGT	1 cut(s)	606
MaeIII	GTNAC	8 cut(s)	203, 286, 424, 456, 556, 893, 935, 1373
MalI	GATC	4 cut(s)	413, 546, 1284, 1481
MboI	GATC	4 cut(s)	411, 544, 1282, 1479
MboII	GAAGA	6 cut(s)	140, 329, 401, 872, 1029, 1292
MfeI	CAATTG	1 cut(s)	1451
MflI	RGATCY	1 cut(s)	1282
MhlI	GDGCHC	5 cut(s)	501, 525, 687, 1179, 1215
MluCI	AATT	6 cut(s)	42, 369, 669, 784, 1095, 1451
MlyI	GAGTC	4 cut(s)	94, 140, 947, 1262
MmeI	TCCRAC	3 cut(s)	46, 1075, 1440
MseI	TTAA	4 cut(s)	186, 603, 692, 1513
MslI	CAYNNNNRTG	5 cut(s)	162, 924, 1206, 1356, 1383
MspA1I	CMGCKG	1 cut(s)	1277
MspR9I	CCNGG	2 cut(s)	633, 1169
MunI	CAATTG	1 cut(s)	1451
MvaI	CCWGG	2 cut(s)	633, 1169
MwoI	GCNNNNNNNGC	2 cut(s)	806, 1115
NdeII	GATC	4 cut(s)	411, 544, 1282, 1479
NlaIV	GGNNCC	2 cut(s)	279, 1440
NmuCI	GTSAC	5 cut(s)	203, 424, 456, 556, 1373
PaeR7I	CTCGAG	1 cut(s)	711
PagI	TCATGA	2 cut(s)	157, 1246
PciSI	GCTCTTC	1 cut(s)	312
PfeI	GAWTC	3 cut(s)	1156, 1418, 1485
PflMI	CCANNNNNTGG	1 cut(s)	1292
PkrI	GCNGC	4 cut(s)	384, 1117, 1276, 1509
PleI	GAGTC	4 cut(s)	94, 139, 947, 1261
PpsI	GAGTC	4 cut(s)	94, 139, 947, 1261
Psp124BI	GAGCTC	2 cut(s)	501, 687
Psp6I	CCWGG	2 cut(s)	631, 1167
PspFI	CCCAGC	2 cut(s)	1224, 1309
PspGI	CCWGG	2 cut(s)	631, 1167
PspN4I	GGNNCC	2 cut(s)	279, 1440
PspPI	GGNCC	3 cut(s)	760, 1165, 1295
PstI	CTGCAG	3 cut(s)	286, 384, 935
PsuI	RGATCY	1 cut(s)	1282
RsaI	GTAC	4 cut(s)	571, 782, 1315, 1364
RsaNI	GTAC	4 cut(s)	570, 781, 1314, 1363
RseI	CAYNNNNRTG	5 cut(s)	162, 924, 1206, 1356, 1383
SacI	GAGCTC	2 cut(s)	501, 687
SalI	GTCGAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	4 cut(s)	186, 603, 692, 1513
SatI	GCNGC	4 cut(s)	383, 1116, 1275, 1508
Sau3AI	GATC	4 cut(s)	411, 544, 1282, 1479
Sau96I	GGNCC	3 cut(s)	760, 1165, 1295
ScaI	AGTACT	1 cut(s)	1364
SchI	GAGTC	4 cut(s)	94, 140, 947, 1262
ScrFI	CCNGG	2 cut(s)	633, 1169
SduI	GDGCHC	5 cut(s)	501, 525, 687, 1179, 1215
SfaNI	GCATC	3 cut(s)	576, 697, 1102
SfcI	CTRYAG	4 cut(s)	282, 380, 931, 1422
Sfr274I	CTCGAG	1 cut(s)	711
SinI	GGWCC	2 cut(s)	760, 1165
SlaI	CTCGAG	1 cut(s)	711
SmiMI	CAYNNNNRTG	5 cut(s)	162, 924, 1206, 1356, 1383
SmlI	CTYRAG	2 cut(s)	680, 711
SmoI	CTYRAG	2 cut(s)	680, 711
Sse9I	AATT	6 cut(s)	42, 369, 669, 784, 1095, 1451
SsiI	CCGC	2 cut(s)	957, 1277
SspMI	CTAG	3 cut(s)	192, 828, 842
SstI	GAGCTC	2 cut(s)	501, 687
StyD4I	CCNGG	2 cut(s)	631, 1167
TaaI	ACNGT	3 cut(s)	11, 569, 1346
TaiI	ACGT	1 cut(s)	609
TaqI	TCGA	2 cut(s)	116, 712
TasI	AATT	6 cut(s)	42, 369, 669, 784, 1095, 1451
TatI	WGTACW	1 cut(s)	1362
TfiI	GAWTC	3 cut(s)	1156, 1418, 1485
Tru1I	TTAA	4 cut(s)	186, 603, 692, 1513
Tru9I	TTAA	4 cut(s)	186, 603, 692, 1513
TscAI	CASTG	5 cut(s)	151, 226, 465, 580, 733
TseFI	GTSAC	5 cut(s)	203, 424, 456, 556, 1373
TseI	GCWGC	4 cut(s)	382, 1115, 1274, 1507
Tsp45I	GTSAC	5 cut(s)	203, 424, 456, 556, 1373
TspDTI	ATGAA	9 cut(s)	35, 141, 186, 213, 330, 467, 522, 1169, 1404
TspRI	CASTG	5 cut(s)	151, 226, 465, 580, 733
Van91I	CCANNNNNTGG	1 cut(s)	1292
VneI	GTGCAC	1 cut(s)	1211
VpaK11BI	GGWCC	2 cut(s)	760, 1165
XapI	RAATTY	1 cut(s)	369
XbaI	TCTAGA	1 cut(s)	841
XhoI	CTCGAG	1 cut(s)	711
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	3 cut(s)	192, 828, 842
ZrmI	AGTACT	1 cut(s)	1364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.