Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008778

Physical Location & Seq

Genomic Coordinates Forward (+)

14536153 .. 14542032

Gene Structure 5880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2295 bp

ATGGAATTCTGTACACAAACCATAGGAGGACAAAAACATGAAAACTTACCATTTGTTTTCTTGTCATCTTTTTCCTTTGCATGCATCTTTGGGATGAATAGCAATAGTCGTGTAACCAAAGAGCGTGCGGAATTAAATTGCCACATTCGAGATGAGAGCAAGGAAATTAAGGATGGCGCCATGGGAGATGGCCGACAGCTCTCAAAGGAGGAAGATTTTCGGGTTAATGAGGATTTGCAAGGCGTAAATGGTGGGCGGCCAGAACAACAGCTTCAAGGATGGGAGGAGTTCTTATCTGTCAGGTCTCTGAAGGTTCTGCTAGTGGAAAATGATGATGGAACTCGCAATATTCTCCGTGCTTTACTGCAAAATTGTGGCTACGAAGTAATAGAGGCAGATAATGGTATACGAGCTTGGGAAATCTTAGAAGATCTTACAACTCATGTTGATCTTATTTTGAGTGAGGTTGTCATGCCCAGTTTGTCAGGGATGGATCTCCTGACCAACATAATGGACCACAAAACTCGAAAGAATATTCCTGTAATTATGATGTCGAGTCAAGATTCTATGAGTACAGTTATTAAGTGTTTATCAAGGGGCGCTGTTGACTTTTTATTGAAGCCTATACGAAAGAATGAGCTTAAAAACCTATGGCGGCATGTTTGGAGGAAATGCCAAAGGCAATCTAGTGGTAGTGGAAGTGCAAGTGATATCGGGACTCAAAAATCTACAAAGTCGTCAGGTTTTGAGGAGTCCGACAAGAACACTGGTAGTAATTGTGAGGATAACGTTGCCCTCGGAAACATTAGTCTGACTGACAAGGATGAAGGTGACAATGGAAGTGGCACTGAGACCAGTCAGGTTGATCCTTCAAGGGATGACACTTTTGGCAATGACGGGGTGCCTGCATTTAAAACTAGTGAGGGTGAAGGGCAAAATGAAGAGCTTGGTGATGTTGTCATGGGCAAAGACTCGGCTATAGGACTTCCTAGAACTTCAGTTTTGCAGCTTGATGAACCAAAAGAAGAAGGGTTAACCAACACGACCGGCACTAATAAAGACAGACTTCCAGAAATGGACTCAAAGAACGATGATGAACAAACAGACAAAGGGCAACCAGAGCTCAACAATGAAAAACCAAATCGGGAATTGAGAAACCAGGCTGTTGATCTAATGGGTGGCATCGGTAACAGTACCACCTTTCCTCAGATGCAATGTATTATGTTTGACGTTCCAAATGGTGTCTTCAAGCTTCCAGAGATAAAAGCTAAGGCCATCCATGACAGTAAAGAAATTCCTTCCCTCGAGCTCAGTTTAATGACGCAGAGAGATGTTCAAGATGCCAGGTGCAGTGGTCATGATCAAAATGTTCTGAGACATTCAAACAATTCAGCCTTCTCAAGGTACAAGTTTTCTACAAATTCGAAGCAGACCCCATCTGGGAGTATTGGTAGCTATTATCCTCTCGGTAATAGCTCAGGGGGAGCAAATGCAAAATCATTTCAAAATTGTCAATCTAAATCATATGGCACTCCTCTCTACCAGCGTTCCAATGGCTGTAGCAATAACAATGACACAGGGTCCACTACTAACAAGTTCTTTGCCAACGAAGAGATATCGGAGGACAATGCAGGCCCCAGATCAATCGACACTTCCTGTGTCTTCCAACCAGACCACAACAGGATTATGTCTTATAACCAGCCTATAAAACAAGGTCAGGCTGATGCTGCAGTCCATAACACAACTTTATCACAAGAATGGGGAATGAATCAGCACGTGCAAGTGCTACAGCAGCACCACCATATGCATAACGTGCGTCTGGACCAGCACCAGCAGATACTGAATCACGATGGTTTGTCTCTGAAAAATCTGGCGGCAGCAGCTCCACAGTGTGGGTCATCCAATGTGCAGGGTGCACCAATGGAACCAAATGTTGGCAGTAACAGTTTGCATGGGTGTGCCTTAGAAAGAAACAACAGTATCAACAGGCAGAGTGGGGGTAGCTCTGCCATAAATTCTAGGGGAACTTACATGGAATCTGATAAGCACATAGCTGGAGAAGGAGGAACTATCAGTGCAACTGAAGGTGGTAGCAAAAGTGAAATTGATCGATACCGTCTTGCACAAAGAGAGGCTGCTTTGCATAAATTCCGCCAGAAGAGGAAAGATAGATGCTTCGAGAAGAAGGTTAGATACCAGAGCAGGAAAAAACTGGCGGAAGAAAGGCCCCGTGTTCGTGGACAGTTTATTCGAAATGTGGTAAATGAAACCAAAGGCAACGATACAGATAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

765

Amino Acids

84.53

Weight (kDa)

5.81

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	105 - 216	1.4e-23	Response regulator receiver domain
CCT	PF06203	710 - 752	7.5e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100
malus_domestica	MD01G1114400.v1.1 MD07G1182300.v1.1 MD07G1182500.v1.1
pyrus_communis	pycom01g14340 pycom07g17500
rosa_chinensis	RchiOBHm_Chr1g0364431
rosa_laevigata	RLG00000027480
rosa_multiflora	Rmu_sc0001342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291850 Rroxscaffold_4G00292280
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324400 Rh1BG287100 Rh1CG303700 Rh1DG318600
rosa_wichuraiana	Rw1G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1695
AccB1I	GGYRCC	2 cut(s)	176, 901
AccB7I	CCANNNNNTGG	2 cut(s)	1892, 1934
AccI	GTMKAC	1 cut(s)	406
AciI	CCGC	6 cut(s)	128, 256, 655, 1874, 2152, 2216
AclI	AACGTT	1 cut(s)	789
AclWI	GGATC	2 cut(s)	501, 860
AcoI	YGGCCR	2 cut(s)	190, 257
AcsI	RAATTY	5 cut(s)	5, 1293, 1420, 2014, 2147
AcuI	CTGAAG	3 cut(s)	329, 981, 2103
AcvI	CACGTG	1 cut(s)	1777
AcyI	GRCGYC	1 cut(s)	177
AdeI	CACNNNGTG	1 cut(s)	1892
AfaI	GTAC	4 cut(s)	13, 574, 1195, 1406
AfiI	CCNNNNNNNGG	4 cut(s)	1401, 1440, 1892, 1934
AgsI	TTSAA	7 cut(s)	275, 619, 873, 1249, 1337, 1383, 1505
AhdI	GACNNNNNGTC	1 cut(s)	1579
AhlI	ACTAGT	1 cut(s)	917
AjnI	CCWGG	2 cut(s)	1158, 1343
AjuI	GAANNNNNNNTTGG	2 cut(s)	1917, 1949
Alw21I	GWGCWC	3 cut(s)	1125, 1311, 1918
Alw26I	GTCTC	4 cut(s)	309, 845, 1369, 1863
Alw44I	GTGCAC	1 cut(s)	1914
AlwI	GGATC	2 cut(s)	501, 860
AlwNI	CAGNNNCTG	1 cut(s)	1840
Ama87I	CYCGRG	1 cut(s)	1304
AoxI	GGCC	5 cut(s)	190, 257, 1272, 1633, 2225
ApaLI	GTGCAC	1 cut(s)	1914
ApeKI	GCWGC	6 cut(s)	1006, 1727, 1792, 1877, 1880, 2135
ApoI	RAATTY	5 cut(s)	5, 1293, 1420, 2014, 2147
ArsI	GACNNNNNNTTYG	2 cut(s)	2232, 2264
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	179, 602
AspS9I	GGNCC	5 cut(s)	514, 1581, 1634, 1822, 2226
AsuHPI	GGTGA	3 cut(s)	842, 938, 962
AsuII	TTCGAA	2 cut(s)	1424, 2251
AvaI	CYCGRG	1 cut(s)	1304
AvaII	GGWCC	3 cut(s)	514, 1581, 1822
BaeGI	GKGCMC	1 cut(s)	1918
BaeI	ACNNNNGTAYC	2 cut(s)	1963, 1996
BanI	GGYRCC	2 cut(s)	176, 901
BanII	GRGCYC	2 cut(s)	1125, 1311
BarI	GAAGNNNNNNTAC	2 cut(s)	2177, 2209
BbrPI	CACGTG	1 cut(s)	1777
BbsI	GAAGAC	2 cut(s)	1237, 1654
Bbv12I	GWGCWC	3 cut(s)	1125, 1311, 1918
BbvI	GCAGC	6 cut(s)	1018, 1714, 1804, 1889, 1892, 2122
BccI	CCATC	8 cut(s)	167, 182, 273, 329, 484, 1283, 1444, 1844
BciT130I	CCWGG	2 cut(s)	1160, 1345
BclI	TGATCA	1 cut(s)	1360
BcoDI	GTCTC	4 cut(s)	309, 845, 1369, 1863
BcuI	ACTAGT	1 cut(s)	917
BfaI	CTAG	5 cut(s)	320, 687, 918, 990, 2019
BfmI	CTRYAG	4 cut(s)	978, 1558, 1728, 1787
BfoI	RGCGCY	2 cut(s)	180, 603
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	9 cut(s)	257, 656, 1007, 1728, 1793, 1875, 1878, 1881, 2136
BlsI	GCNGC	9 cut(s)	258, 657, 1008, 1729, 1794, 1876, 1879, 1882, 2137
Bme1390I	CCNGG	2 cut(s)	1160, 1345
Bme18I	GGWCC	3 cut(s)	514, 1581, 1822
BmeRI	GACNNNNNGTC	1 cut(s)	1579
BmeT110I	CYCGRG	1 cut(s)	1304
BmgT120I	GGNCC	5 cut(s)	514, 1581, 1634, 1822, 2226
BmiI	GGNNCC	6 cut(s)	178, 903, 1582, 1636, 1926, 2228
BmrFI	CCNGG	2 cut(s)	1160, 1345
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	6 cut(s)	93, 1191, 1200, 1330, 1714, 2162
BmuI	ACTGGG	1 cut(s)	471
BpiI	GAAGAC	2 cut(s)	1237, 1654
BpmI	CTGGAG	1 cut(s)	2076
Bpu10I	CCTNAGC	2 cut(s)	1269, 1477
Bpu14I	TTCGAA	2 cut(s)	1424, 2251
BpuEI	CTTGAG	1 cut(s)	1384
Bsa29I	ATCGAT	1 cut(s)	2110
BsaAI	YACGTR	1 cut(s)	1777
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	2 cut(s)	309, 845
BsaJI	CCNNGG	2 cut(s)	180, 796
BsaXI	ACNNNNNCTCC	2 cut(s)	1435, 1465
Bsc4I	CCNNNNNNNGG	4 cut(s)	1401, 1440, 1892, 1934
Bse118I	RCCGGY	1 cut(s)	1046
Bse1I	ACTGG	4 cut(s)	477, 772, 855, 2217
Bse3DI	GCAATG	2 cut(s)	898, 1220
BseBI	CCWGG	2 cut(s)	1160, 1345
BseCI	ATCGAT	1 cut(s)	2110
BseDI	CCNNGG	2 cut(s)	180, 796
BseGI	GGATG	8 cut(s)	99, 178, 284, 495, 829, 883, 1275, 1898
BseLI	CCNNNNNNNGG	4 cut(s)	1401, 1440, 1892, 1934
BseMI	GCAATG	2 cut(s)	898, 1220
BseMII	CTCAG	5 cut(s)	840, 1220, 1324, 1364, 1491
BseNI	ACTGG	4 cut(s)	477, 772, 855, 2217
BseRI	GAGGAG	3 cut(s)	299, 764, 1524
BseSI	GKGCMC	1 cut(s)	1918
BseXI	GCAGC	6 cut(s)	1018, 1714, 1804, 1889, 1892, 2122
BsgI	GTGCAG	2 cut(s)	1369, 1928
Bsh1285I	CGRYCG	1 cut(s)	1047
BshFI	GGCC	5 cut(s)	192, 259, 1274, 1635, 2227
BshNI	GGYRCC	2 cut(s)	176, 901
BshVI	ATCGAT	1 cut(s)	2110
BsiEI	CGRYCG	1 cut(s)	1047
BsiHKAI	GWGCWC	3 cut(s)	1125, 1311, 1918
BsiHKCI	CYCGRG	1 cut(s)	1304
BsiSI	CCGG	1 cut(s)	1047
BslFI	GGGAC	1 cut(s)	730
BslI	CCNNNNNNNGG	4 cut(s)	1401, 1440, 1892, 1934
BsmAI	GTCTC	4 cut(s)	309, 845, 1369, 1863
BsmFI	GGGAC	1 cut(s)	730
BsnI	GGCC	5 cut(s)	192, 259, 1274, 1635, 2227
Bso31I	GGTCTC	2 cut(s)	309, 845
BsoBI	CYCGRG	1 cut(s)	1304
Bsp119I	TTCGAA	2 cut(s)	1424, 2251
Bsp1286I	GDGCHC	3 cut(s)	1125, 1311, 1918
Bsp1407I	TGTACA	1 cut(s)	11
Bsp143I	GATC	8 cut(s)	430, 448, 493, 865, 1168, 1360, 1640, 2107
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	6 cut(s)	128, 256, 655, 1874, 2152, 2216
BspANI	GGCC	5 cut(s)	192, 259, 1274, 1635, 2227
BspCNI	CTCAG	5 cut(s)	841, 1219, 1323, 1365, 1490
BspDI	ATCGAT	1 cut(s)	2110
BspHI	TCATGA	1 cut(s)	1357
BspLI	GGNNCC	6 cut(s)	178, 903, 1582, 1636, 1926, 2228
BspMAI	CTGCAG	1 cut(s)	1732
BspPI	GGATC	2 cut(s)	501, 860
BspQI	GCTCTTC	1 cut(s)	936
BspT104I	TTCGAA	2 cut(s)	1424, 2251
BspT107I	GGYRCC	2 cut(s)	176, 901
BspTNI	GGTCTC	2 cut(s)	309, 845
BsrDI	GCAATG	2 cut(s)	898, 1220
BsrFI	RCCGGY	1 cut(s)	1046
BsrGI	TGTACA	1 cut(s)	11
BsrI	ACTGG	4 cut(s)	477, 772, 855, 2217
BssAI	RCCGGY	1 cut(s)	1046
BssECI	CCNNGG	2 cut(s)	180, 796
BssMI	GATC	8 cut(s)	430, 448, 493, 865, 1168, 1360, 1640, 2107
BssNAI	GTATAC	1 cut(s)	407
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	180
Bst1107I	GTATAC	1 cut(s)	407
Bst2UI	CCWGG	2 cut(s)	1160, 1345
Bst4CI	ACNGT	8 cut(s)	577, 1193, 1286, 1890, 1946, 1979, 2117, 2244
Bst6I	CTCTTC	3 cut(s)	936, 1605, 2153
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	1813
BstAUI	TGTACA	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	1777
BstBI	TTCGAA	2 cut(s)	1424, 2251
BstC8I	GCNNGC	4 cut(s)	82, 126, 906, 1633
BstDEI	CTNAG	8 cut(s)	424, 849, 1206, 1269, 1310, 1373, 1477, 1963
BstDSI	CCRYGG	1 cut(s)	180
BstENI	CCTNNNNNAGG	1 cut(s)	1399
BstF5I	GGATG	8 cut(s)	99, 178, 284, 495, 829, 883, 1275, 1898
BstH2I	RGCGCY	2 cut(s)	180, 603
BstHHI	GCGC	2 cut(s)	179, 602
BstKTI	GATC	8 cut(s)	433, 451, 496, 868, 1171, 1363, 1643, 2110
BstMAI	GTCTC	4 cut(s)	309, 845, 1369, 1863
BstMBI	GATC	8 cut(s)	430, 448, 493, 865, 1168, 1360, 1640, 2107
BstMCI	CGRYCG	1 cut(s)	1047
BstMWI	GCNNNNNNNGC	5 cut(s)	1120, 1727, 1792, 1813, 1880
BstNI	CCWGG	2 cut(s)	1160, 1345
BstNSI	RCATGY	2 cut(s)	84, 662
BstSCI	CCNGG	2 cut(s)	1158, 1343
BstSFI	CTRYAG	4 cut(s)	978, 1558, 1728, 1787
BstSLI	GKGCMC	1 cut(s)	1918
BstV1I	GCAGC	6 cut(s)	1018, 1714, 1804, 1889, 1892, 2122
BstV2I	GAAGAC	2 cut(s)	1237, 1654
BstX2I	RGATCY	2 cut(s)	430, 493
BstXI	CCANNNNNNTGG	1 cut(s)	511
BstYI	RGATCY	2 cut(s)	430, 493
BstZ17I	GTATAC	1 cut(s)	407
Bsu15I	ATCGAT	1 cut(s)	2110
BsuRI	GGCC	5 cut(s)	192, 259, 1274, 1635, 2227
BsuTUI	ATCGAT	1 cut(s)	2110
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	8 cut(s)	99, 178, 284, 495, 829, 883, 1275, 1898
BtsI	GCAGTG	1 cut(s)	1357
BtsIMutI	CAGTG	5 cut(s)	765, 846, 1357, 1895, 2080
Cac8I	GCNNGC	4 cut(s)	82, 126, 906, 1633
CaiI	CAGNNNCTG	1 cut(s)	1840
CciI	TCATGA	1 cut(s)	1357
CfoI	GCGC	2 cut(s)	179, 602
Cfr10I	RCCGGY	1 cut(s)	1046
Cfr13I	GGNCC	5 cut(s)	514, 1581, 1634, 1822, 2226
ClaI	ATCGAT	1 cut(s)	2110
CseI	GACGC	2 cut(s)	1330, 1805
Csp6I	GTAC	4 cut(s)	12, 573, 1194, 1405
CspCI	CAANNNNNGTGG	2 cut(s)	823, 858
CviQI	GTAC	4 cut(s)	12, 573, 1194, 1405
DdeI	CTNAG	8 cut(s)	424, 849, 1206, 1269, 1310, 1373, 1477, 1963
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	8 cut(s)	432, 450, 495, 867, 1170, 1362, 1642, 2109
DpnII	GATC	8 cut(s)	430, 448, 493, 865, 1168, 1360, 1640, 2107
DraI	TTTAAA	1 cut(s)	913
DraIII	CACNNNGTG	1 cut(s)	1892
DriI	GACNNNNNGTC	1 cut(s)	1579
EaeI	YGGCCR	2 cut(s)	190, 257
Eam1104I	CTCTTC	3 cut(s)	936, 1605, 2153
Eam1105I	GACNNNNNGTC	1 cut(s)	1579
EarI	CTCTTC	3 cut(s)	936, 1605, 2153
EciI	GGCGGA	2 cut(s)	2141, 2231
Ecl136II	GAGCTC	2 cut(s)	1123, 1309
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	2 cut(s)	1125, 1311
Eco31I	GGTCTC	2 cut(s)	309, 845
Eco32I	GATATC	2 cut(s)	712, 1617
Eco47I	GGWCC	3 cut(s)	514, 1581, 1822
Eco53kI	GAGCTC	2 cut(s)	1123, 1309
Eco57I	CTGAAG	3 cut(s)	329, 981, 2103
Eco72I	CACGTG	1 cut(s)	1777
Eco88I	CYCGRG	1 cut(s)	1304
EcoICRI	GAGCTC	2 cut(s)	1123, 1309
EcoNI	CCTNNNNNAGG	1 cut(s)	1399
EcoO109I	RGGNCCY	2 cut(s)	1634, 2226
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	2 cut(s)	1158, 1343
EcoRV	GATATC	2 cut(s)	712, 1617
EcoT14I	CCWWGG	1 cut(s)	180
EcoT22I	ATGCAT	2 cut(s)	86, 1809
EcoT38I	GRGCYC	2 cut(s)	1125, 1311
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	180
FalI	AAGNNNNNCTT	2 cut(s)	1050, 1082
FaqI	GGGAC	1 cut(s)	730
FauNDI	CATATG	2 cut(s)	1525, 1803
FbaI	TGATCA	1 cut(s)	1360
FblI	GTMKAC	1 cut(s)	406
Fnu4HI	GCNGC	9 cut(s)	257, 656, 1007, 1728, 1793, 1875, 1878, 1881, 2136
FokI	GGATG	8 cut(s)	106, 185, 291, 502, 836, 890, 1262, 1885
FriOI	GRGCYC	2 cut(s)	1125, 1311
Fsp4HI	GCNGC	9 cut(s)	257, 656, 1007, 1728, 1793, 1875, 1878, 1881, 2136
FspBI	CTAG	5 cut(s)	320, 687, 918, 990, 2019
GlaI	GCGC	2 cut(s)	178, 601
GluI	GCNGC	9 cut(s)	257, 656, 1007, 1728, 1793, 1875, 1878, 1881, 2136
GsuI	CTGGAG	1 cut(s)	2076
HaeII	RGCGCY	2 cut(s)	180, 603
HaeIII	GGCC	5 cut(s)	192, 259, 1274, 1635, 2227
HapII	CCGG	1 cut(s)	1047
HgaI	GACGC	2 cut(s)	1330, 1805
HhaI	GCGC	2 cut(s)	179, 602
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	2 cut(s)	177, 600
HinP1I	GCGC	2 cut(s)	177, 600
HincII	GTYRAC	2 cut(s)	607, 1035
HindII	GTYRAC	2 cut(s)	607, 1035
HindIII	AAGCTT	1 cut(s)	1250
HinfI	GANTC	9 cut(s)	556, 563, 718, 752, 971, 1079, 1768, 1843, 2036
HpaI	GTTAAC	1 cut(s)	1035
HpaII	CCGG	1 cut(s)	1047
HphI	GGTGA	3 cut(s)	842, 938, 962
Hpy166II	GTNNAC	7 cut(s)	14, 407, 607, 1035, 1584, 1916, 2240
Hpy188I	TCNGA	9 cut(s)	309, 757, 800, 813, 1209, 1374, 1621, 1863, 2041
Hpy8I	GTNNAC	7 cut(s)	14, 407, 607, 1035, 1584, 1916, 2240
HpyCH4III	ACNGT	8 cut(s)	577, 1193, 1286, 1890, 1946, 1979, 2117, 2244
HpyCH4IV	ACGT	4 cut(s)	789, 1230, 1776, 1812
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1120, 1727, 1792, 1813, 1880
HpyF3I	CTNAG	8 cut(s)	424, 849, 1206, 1269, 1310, 1373, 1477, 1963
HpySE526I	ACGT	4 cut(s)	789, 1230, 1776, 1812
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	2 cut(s)	177, 600
KasI	GGCGCC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	1360
KspAI	GTTAAC	1 cut(s)	1035
Kzo9I	GATC	8 cut(s)	430, 448, 493, 865, 1168, 1360, 1640, 2107
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	2 cut(s)	1484, 1888
Lsp1109I	GCAGC	6 cut(s)	1018, 1714, 1804, 1889, 1892, 2122
LweI	GCATC	6 cut(s)	93, 1191, 1200, 1330, 1714, 2162
MaeI	CTAG	5 cut(s)	320, 687, 918, 990, 2019
MaeII	ACGT	4 cut(s)	789, 1230, 1776, 1812
MaeIII	GTNAC	4 cut(s)	112, 830, 1187, 1940
MalI	GATC	8 cut(s)	432, 450, 495, 867, 1170, 1362, 1642, 2109
MboI	GATC	8 cut(s)	430, 448, 493, 865, 1168, 1360, 1640, 2107
MflI	RGATCY	2 cut(s)	430, 493
MhlI	GDGCHC	3 cut(s)	1125, 1311, 1918
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	5 cut(s)	565, 712, 761, 965, 1073
MmeI	TCCRAC	2 cut(s)	780, 1690
Mph1103I	ATGCAT	2 cut(s)	86, 1809
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	8 cut(s)	134, 168, 225, 582, 642, 912, 1034, 1316
MslI	CAYNNNNRTG	2 cut(s)	1756, 1956
MspI	CCGG	1 cut(s)	1047
MspR9I	CCNGG	2 cut(s)	1160, 1345
MvaI	CCWGG	2 cut(s)	1160, 1345
MwoI	GCNNNNNNNGC	5 cut(s)	1120, 1727, 1792, 1813, 1880
NarI	GGCGCC	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	180
NdeI	CATATG	2 cut(s)	1525, 1803
NdeII	GATC	8 cut(s)	430, 448, 493, 865, 1168, 1360, 1640, 2107
NlaIV	GGNNCC	6 cut(s)	178, 903, 1582, 1636, 1926, 2228
NmeAIII	GCCGAG	1 cut(s)	953
NmuCI	GTSAC	1 cut(s)	830
NsiI	ATGCAT	2 cut(s)	86, 1809
NspI	RCATGY	2 cut(s)	84, 662
NspV	TTCGAA	2 cut(s)	1424, 2251
PaeI	GCATGC	1 cut(s)	84
PaeR7I	CTCGAG	1 cut(s)	1304
PagI	TCATGA	1 cut(s)	1357
PciSI	GCTCTTC	1 cut(s)	936
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	4 cut(s)	563, 1768, 1843, 2036
PflMI	CCANNNNNTGG	2 cut(s)	1892, 1934
PkrI	GCNGC	9 cut(s)	258, 657, 1008, 1729, 1794, 1876, 1879, 1882, 2137
PleI	GAGTC	5 cut(s)	564, 712, 760, 965, 1073
PluTI	GGCGCC	1 cut(s)	180
PmaCI	CACGTG	1 cut(s)	1777
PmlI	CACGTG	1 cut(s)	1777
PpsI	GAGTC	5 cut(s)	564, 712, 760, 965, 1073
Ppu21I	YACGTR	1 cut(s)	1777
PsiI	TTATAA	1 cut(s)	1695
Psp124BI	GAGCTC	2 cut(s)	1125, 1311
Psp1406I	AACGTT	1 cut(s)	789
Psp6I	CCWGG	2 cut(s)	1158, 1343
PspCI	CACGTG	1 cut(s)	1777
PspGI	CCWGG	2 cut(s)	1158, 1343
PspN4I	GGNNCC	6 cut(s)	178, 903, 1582, 1636, 1926, 2228
PspPI	GGNCC	5 cut(s)	514, 1581, 1634, 1822, 2226
PspXI	VCTCGAGB	1 cut(s)	1304
PstI	CTGCAG	1 cut(s)	1732
PstNI	CAGNNNCTG	1 cut(s)	1840
PsuI	RGATCY	2 cut(s)	430, 493
RsaI	GTAC	4 cut(s)	13, 574, 1195, 1406
RsaNI	GTAC	4 cut(s)	12, 573, 1194, 1405
RseI	CAYNNNNRTG	2 cut(s)	1756, 1956
SacI	GAGCTC	2 cut(s)	1125, 1311
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	8 cut(s)	134, 168, 225, 582, 642, 912, 1034, 1316
SatI	GCNGC	9 cut(s)	257, 656, 1007, 1728, 1793, 1875, 1878, 1881, 2136
Sau3AI	GATC	8 cut(s)	430, 448, 493, 865, 1168, 1360, 1640, 2107
Sau96I	GGNCC	5 cut(s)	514, 1581, 1634, 1822, 2226
SchI	GAGTC	5 cut(s)	565, 712, 761, 965, 1073
ScrFI	CCNGG	2 cut(s)	1160, 1345
SduI	GDGCHC	3 cut(s)	1125, 1311, 1918
SfaNI	GCATC	6 cut(s)	93, 1191, 1200, 1330, 1714, 2162
SfcI	CTRYAG	4 cut(s)	978, 1558, 1728, 1787
SfoI	GGCGCC	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	1304
SfuI	TTCGAA	2 cut(s)	1424, 2251
SinI	GGWCC	3 cut(s)	514, 1581, 1822
SlaI	CTCGAG	1 cut(s)	1304
SmiMI	CAYNNNNRTG	2 cut(s)	1756, 1956
SmlI	CTYRAG	2 cut(s)	1304, 1399
SmoI	CTYRAG	2 cut(s)	1304, 1399
SpeI	ACTAGT	1 cut(s)	917
SphI	GCATGC	1 cut(s)	84
SsiI	CCGC	6 cut(s)	128, 256, 655, 1874, 2152, 2216
SspDI	GGCGCC	1 cut(s)	176
SspI	AATATT	2 cut(s)	349, 535
SspMI	CTAG	5 cut(s)	320, 687, 918, 990, 2019
SstI	GAGCTC	2 cut(s)	1125, 1311
StyD4I	CCNGG	2 cut(s)	1158, 1343
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	8 cut(s)	577, 1193, 1286, 1890, 1946, 1979, 2117, 2244
TaiI	ACGT	4 cut(s)	792, 1233, 1779, 1815
TaqI	TCGA	9 cut(s)	148, 526, 554, 1305, 1424, 1647, 2110, 2178, 2251
TatI	WGTACW	2 cut(s)	11, 572
TauI	GCSGC	3 cut(s)	259, 658, 1877
TfiI	GAWTC	4 cut(s)	563, 1768, 1843, 2036
Tru1I	TTAA	8 cut(s)	134, 168, 225, 582, 642, 912, 1034, 1316
Tru9I	TTAA	8 cut(s)	134, 168, 225, 582, 642, 912, 1034, 1316
TscAI	CASTG	5 cut(s)	772, 853, 1357, 1895, 2080
TseFI	GTSAC	1 cut(s)	830
TseI	GCWGC	6 cut(s)	1006, 1727, 1792, 1877, 1880, 2135
Tsp45I	GTSAC	1 cut(s)	830
TspDTI	ATGAA	9 cut(s)	54, 110, 840, 954, 1029, 1110, 1146, 1781, 2280
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	5 cut(s)	772, 853, 1357, 1895, 2080
Van91I	CCANNNNNTGG	2 cut(s)	1892, 1934
VneI	GTGCAC	1 cut(s)	1914
VpaK11BI	GGWCC	3 cut(s)	514, 1581, 1822
XagI	CCTNNNNNAGG	1 cut(s)	1399
XapI	RAATTY	5 cut(s)	5, 1293, 1420, 2014, 2147
XceI	RCATGY	2 cut(s)	84, 662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1550
XhoI	CTCGAG	1 cut(s)	1304
XmiI	GTMKAC	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	5 cut(s)	320, 687, 918, 990, 2019
Zsp2I	ATGCAT	2 cut(s)	86, 1809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.