Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008778

Physical Location & Seq

Genomic Coordinates Forward (+)

57778724 .. 57782887

Gene Structure 4164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG303700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2277 bp

ATGGGGAAAGTTCGGGTGAATATCAATGGTCCGGTAACCAATAAAGAGAGTGTGGATTTAAATTGCCATACTGAAGATGAGAACAAGGAGATTAGCGGTGCTGTTACAGGAGTCTTGGGAGAGGGCCAAGGGATCTTAAAGGAAGATGAAGTGCAGGTTACTGACAATCTGCAAGTCGTAAATGATGCACAAACAGAAGCAGTCCAGGTTCAGGTCCTCAGTCAGTCTGGCCAGCAAAGTTCGGAACAACAGCTTCAAGACCCTTCTCTTTTCTGGGAAGGGTTCCTGCCTACCAAGTCTCTCAAGGTTTTGGTAGTGGAAGATGATGATTCAACTCGGCGTGTCATTTGTGCATTACTGCAGAAGTGTGGCTATGAAGTAACAGCTGTAGCTAGTGGATTGCAAGCTTGGAATATTTTAAAAGATCATAGTATTCATGTCGATCTTGTTTTAACTGAGGTTGTCATGCCTGGTCCATCAGGCATTGACCTCCTAAGCAAGATGATGAGCCACGAAACTTGCAAGGATATTCCTGTGATTATGATGTCATCTAATGATTCTTTGAGTATGGTGTTTAAGTGTCTATCAAAGGGTGCGGTTGACTTTTTAGTGAAGCCTATTCGAAAGAACGAGCTTAAAAATCTTTGGCAGCATGCTTGGAGGAAATGCCGGAGCTCCAGTGGTAGTGCAAGTGAAAATGGTGTCCAGACTCAAAAAACTACGTCGACAAGTGATGAAGAGTCAGACAAAAACACTGGCAGTAATCATGAGGATGACAATGAAATCATTGGGGTTAATGCTAGGGATGAAAGTGACAAAGGAAGTGGCACTGAGATTACTCAGGCTATTATTCGTTCAAGTCCTGAAGCATTTGGAAATGACTTGGTTCCTGCAGTTACAACAAGGGAGTGTGAAGGGCAGAATGAAGAGCTTGGTGCTGTTGTCACAGGCGCAGACTTGGGTATGGGAGTTCCTAAAATTCCAAATCAGCAGCTTGAAGAACCAAAGGAGAAAGACTTGATCAACATAGTTGTCACTAATAAAGACAAACTTTCTAAAATGAAGTCACTGAAAGAGGATGATAAGCTAAAGAAAGGCCAAGTGGAGCTCAACAATGAAAAACCAAATGAGCACTTGGAAAACCAAGCAGTTGATCTGATAGGTGTCACCACTAACAGTACCACTGATCCTCAGATGCAAAGTGGTATGTTTAACACCCCGTGTAGTGTCTCCAAAGTTCCCGGCATAAGAGATAAGGACATCAATGACAGCAAAGAAATTGCTTCCCCTGAGCTCAGTTTAAAGACACAGACAGATGCTCGAGATACTGGGTTCAGTGTCCATGACCAAAATGCTTTGAGACATTTGGACCTTTCAGCCCCCTCAAGGTACAAATTTCCTACAACTGCTAATCAGGCTGGAAGTGTGAAACTTGCTAGTCATTCTCCTCTAGATAGTATCTCGGAGGAAGAAAAGGCCAAACTATTGCCTGTTTTTCTGTGTAACTTAACCAGCACTCCCCTTTATCATTCCAATGACTGCAGTAACAACAACTGCATGGACTCCGCTACAAATGATTTCCTTGCAGAAAGAAAGGCAGTTGAGGACAAACCAGAGCTGAAATCAACAATCAAACATCTCCAGTCTTCCTCTGCCTTCCAACCACACCATGATAGCCTTTTATCTTTTTCCCACCAGCCTATAATTCAAGGGAAGGCTGATGCTGCATTTGGTAGCACTATATTGGCACAAGGAAGGGGCATGAATCATCAGGTCCAGGTGGAGCACCATCATCTCCATTACCACCATCACCACCATGTGCACAGCATACCCCAGCACCAGCAGATACCCAATCATGATGAGTCGTCTGGAAAAAATATGGCAGCGGAAGATCCATGCTTTGGGCCATCTCATGTGCTGGGTACACCGATAGAAGGGAATGTTGGTAATCACAGTGTGCATGCGAGTGAGTACTCTGGAAGTGACCATAGTAGTGATGAACAGAATATAAGTAGCTCTCCCATAGATTCTAGAGGAGAAAAAGAGGGAACCATCAGCCCAATTGAAGTTGGAAGCAAAAGTGGAGTTGATCAGAATCATGTATCAAAAAGAGAGGCTGCTTTGAATAGGTTCCGCCAGAAGAGGAAAGAGAGATGCTTCGACAAGAAGGTCAGATACCAAAGCAGGAAGAAACTAGCAGATCAAAGACCACGTGTCCGTGGAAAGTTTGTTCAACAGGAGGTGCATGAAAACAAAGGCAAGGACACACATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

758

Amino Acids

83.36

Weight (kDa)

5.77

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	103 - 214	1.4e-24	Response regulator receiver domain
CCT	PF06203	704 - 746	3e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100
malus_domestica	MD01G1114400.v1.1 MD07G1182300.v1.1 MD07G1182500.v1.1
pyrus_communis	pycom01g14340 pycom07g17500
rosa_chinensis	RchiOBHm_Chr1g0364431
rosa_laevigata	RLG00000027480
rosa_multiflora	Rmu_sc0001342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291850 Rroxscaffold_4G00292280
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324400 Rh1BG287100 Rh1CG303700 Rh1DG318600
rosa_wichuraiana	Rw1G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2168
Acc36I	ACCTGC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	1901
AccI	GTMKAC	1 cut(s)	725
AciI	CCGC	5 cut(s)	96, 596, 1566, 1886, 2134
AclWI	GGATC	3 cut(s)	140, 1181, 1886
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	2 cut(s)	978, 1394
AcuI	CTGAAG	2 cut(s)	93, 885
AcvI	CACGTG	1 cut(s)	2213
AdeI	CACNNNGTG	3 cut(s)	1221, 1819, 1957
AfaI	GTAC	4 cut(s)	1180, 1391, 1924, 1973
AfiI	CCNNNNNNNGG	4 cut(s)	211, 1386, 1901, 1934
AflIII	ACRYGT	1 cut(s)	2212
AgsI	TTSAA	8 cut(s)	257, 333, 858, 998, 1709, 2066, 2125, 2234
AhdI	GACNNNNNGTC	1 cut(s)	2213
AjnI	CCWGG	3 cut(s)	204, 469, 1776
AjuI	GAANNNNNNNTTGG	2 cut(s)	1926, 1958
AloI	GAACNNNNNNTCC	2 cut(s)	2214, 2246
Alw21I	GWGCWC	6 cut(s)	677, 1110, 1134, 1296, 1788, 1824
Alw26I	GTCTC	3 cut(s)	303, 1234, 1354
Alw44I	GTGCAC	1 cut(s)	1820
AlwI	GGATC	3 cut(s)	140, 1181, 1886
Ama87I	CYCGRG	1 cut(s)	1320
AoxI	GGCC	5 cut(s)	124, 229, 1096, 1476, 1904
ApaLI	GTGCAC	1 cut(s)	1820
ApeKI	GCWGC	5 cut(s)	649, 991, 1724, 1883, 2117
ApoI	RAATTY	2 cut(s)	978, 1394
Asp700I	GAANNNNTTC	1 cut(s)	2129
AspLEI	GCGC	1 cut(s)	953
AspS9I	GGNCC	7 cut(s)	29, 124, 214, 473, 1369, 1774, 1904
AsuC2I	CCSGG	1 cut(s)	1242
AsuHPI	GGTGA	3 cut(s)	28, 1159, 1802
AsuII	TTCGAA	1 cut(s)	622
AvaI	CYCGRG	1 cut(s)	1320
AvaII	GGWCC	5 cut(s)	29, 214, 473, 1369, 1774
BaeGI	GKGCMC	1 cut(s)	1824
BalI	TGGCCA	1 cut(s)	231
BanII	GRGCYC	3 cut(s)	677, 1110, 1296
BarI	GAAGNNNNNNTAC	2 cut(s)	2159, 2191
BbrPI	CACGTG	1 cut(s)	2213
BbsI	GAAGAC	1 cut(s)	1638
Bbv12I	GWGCWC	6 cut(s)	677, 1110, 1134, 1296, 1788, 1824
BbvI	GCAGC	5 cut(s)	661, 1003, 1711, 1895, 2104
BccI	CCATC	5 cut(s)	484, 1797, 1815, 1915, 2060
BciT130I	CCWGG	3 cut(s)	206, 471, 1778
BclI	TGATCA	2 cut(s)	1020, 2089
BcnI	CCSGG	1 cut(s)	1242
BcoDI	GTCTC	3 cut(s)	303, 1234, 1354
BfaI	CTAG	6 cut(s)	393, 801, 1437, 1451, 2031, 2195
BfmI	CTRYAG	4 cut(s)	359, 387, 891, 1540
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	5 cut(s)	650, 992, 1725, 1884, 2118
BlsI	GCNGC	5 cut(s)	651, 993, 1726, 1885, 2119
BmcAI	AGTACT	1 cut(s)	1973
Bme1390I	CCNGG	4 cut(s)	206, 471, 1242, 1778
Bme18I	GGWCC	5 cut(s)	29, 214, 473, 1369, 1774
BmeRI	GACNNNNNGTC	1 cut(s)	2213
BmeT110I	CYCGRG	1 cut(s)	1320
BmgT120I	GGNCC	7 cut(s)	29, 124, 214, 473, 1369, 1774, 1904
BmiI	GGNNCC	4 cut(s)	284, 888, 2050, 2132
BmrFI	CCNGG	4 cut(s)	206, 471, 1242, 1778
BmrI	ACTGGG	1 cut(s)	1338
BmsI	GCATC	5 cut(s)	175, 1185, 1306, 1711, 2144
BmuI	ACTGGG	1 cut(s)	1338
BpiI	GAAGAC	1 cut(s)	1638
BpmI	CTGGAG	2 cut(s)	661, 1625
Bpu10I	CCTNAGC	2 cut(s)	494, 1290
Bpu14I	TTCGAA	1 cut(s)	622
BpuEI	CTTGAG	2 cut(s)	287, 1369
BpuMI	CCSGG	1 cut(s)	1242
BsaAI	YACGTR	1 cut(s)	2213
BsaBI	GATNNNNATC	1 cut(s)	2094
BsaJI	CCNNGG	2 cut(s)	127, 2218
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	4 cut(s)	664, 694, 1501, 1531
Bsc4I	CCNNNNNNNGG	4 cut(s)	211, 1386, 1901, 1934
Bse1I	ACTGG	4 cut(s)	678, 760, 1333, 1642
Bse3DI	GCAATG	1 cut(s)	2269
Bse8I	GATNNNNATC	1 cut(s)	2094
BseBI	CCWGG	3 cut(s)	206, 471, 1778
BseDI	CCNNGG	2 cut(s)	127, 2218
BseGI	GGATG	3 cut(s)	778, 811, 1084
BseJI	GATNNNNATC	1 cut(s)	2094
BseLI	CCNNNNNNNGG	4 cut(s)	211, 1386, 1901, 1934
BseMI	GCAATG	1 cut(s)	2269
BseMII	CTCAG	7 cut(s)	232, 447, 822, 854, 1205, 1281, 1309
BseNI	ACTGG	4 cut(s)	678, 760, 1333, 1642
BseRI	GAGGAG	2 cut(s)	1437, 2049
BseSI	GKGCMC	1 cut(s)	1824
BseXI	GCAGC	5 cut(s)	661, 1003, 1711, 1895, 2104
BseYI	CCCAGC	2 cut(s)	1833, 1918
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	5 cut(s)	126, 231, 1098, 1478, 1906
BsiHKAI	GWGCWC	6 cut(s)	677, 1110, 1134, 1296, 1788, 1824
BsiHKCI	CYCGRG	1 cut(s)	1320
BsiSI	CCGG	3 cut(s)	32, 670, 1242
BslI	CCNNNNNNNGG	4 cut(s)	211, 1386, 1901, 1934
BsmAI	GTCTC	3 cut(s)	303, 1234, 1354
BsnI	GGCC	5 cut(s)	126, 231, 1098, 1478, 1906
BsoBI	CYCGRG	1 cut(s)	1320
Bsp119I	TTCGAA	1 cut(s)	622
Bsp1286I	GDGCHC	6 cut(s)	677, 1110, 1134, 1296, 1788, 1824
Bsp143I	GATC	9 cut(s)	132, 424, 442, 1020, 1153, 1186, 1891, 2089, 2200
BspACI	CCGC	5 cut(s)	96, 596, 1566, 1886, 2134
BspANI	GGCC	5 cut(s)	126, 231, 1098, 1478, 1906
BspCNI	CTCAG	7 cut(s)	231, 448, 823, 853, 1204, 1282, 1308
BspHI	TCATGA	2 cut(s)	766, 1855
BspLI	GGNNCC	4 cut(s)	284, 888, 2050, 2132
BspMAI	CTGCAG	3 cut(s)	363, 895, 1544
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	3 cut(s)	140, 1181, 1886
BspQI	GCTCTTC	1 cut(s)	921
BspT104I	TTCGAA	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	2269
BsrI	ACTGG	4 cut(s)	678, 760, 1333, 1642
BssECI	CCNNGG	2 cut(s)	127, 2218
BssMI	GATC	9 cut(s)	132, 424, 442, 1020, 1153, 1186, 1891, 2089, 2200
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	3 cut(s)	206, 471, 1778
Bst4CI	ACNGT	2 cut(s)	1178, 1955
Bst6I	CTCTTC	3 cut(s)	732, 921, 2135
BstBAI	YACGTR	1 cut(s)	2213
BstBI	TTCGAA	1 cut(s)	622
BstC8I	GCNNGC	4 cut(s)	233, 405, 654, 1962
BstDEI	CTNAG	8 cut(s)	218, 456, 494, 831, 840, 1191, 1290, 1295
BstDSI	CCRYGG	1 cut(s)	2218
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	3 cut(s)	778, 811, 1084
BstHHI	GCGC	1 cut(s)	953
BstKTI	GATC	9 cut(s)	135, 427, 445, 1023, 1156, 1189, 1894, 2092, 2203
BstMAI	GTCTC	3 cut(s)	303, 1234, 1354
BstMBI	GATC	9 cut(s)	132, 424, 442, 1020, 1153, 1186, 1891, 2089, 2200
BstMWI	GCNNNNNNNGC	2 cut(s)	1415, 1724
BstNI	CCWGG	3 cut(s)	206, 471, 1778
BstNSI	RCATGY	2 cut(s)	656, 1964
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	4 cut(s)	204, 469, 1240, 1776
BstSFI	CTRYAG	4 cut(s)	359, 387, 891, 1540
BstSLI	GKGCMC	1 cut(s)	1824
BstV1I	GCAGC	5 cut(s)	661, 1003, 1711, 1895, 2104
BstV2I	GAAGAC	1 cut(s)	1638
BstX2I	RGATCY	2 cut(s)	132, 1891
BstYI	RGATCY	2 cut(s)	132, 1891
BsuRI	GGCC	5 cut(s)	126, 231, 1098, 1478, 1906
BtgI	CCRYGG	1 cut(s)	2218
BtsCI	GGATG	3 cut(s)	778, 811, 1084
BtsIMutI	CAGTG	7 cut(s)	685, 753, 828, 1067, 1182, 1342, 1960
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	4 cut(s)	233, 405, 654, 1962
CciI	TCATGA	2 cut(s)	766, 1855
CfoI	GCGC	1 cut(s)	953
Cfr13I	GGNCC	7 cut(s)	29, 124, 214, 473, 1369, 1774, 1904
Csp6I	GTAC	4 cut(s)	1179, 1390, 1923, 1972
CspCI	CAANNNNNGTGG	4 cut(s)	500, 535, 805, 840
CviQI	GTAC	4 cut(s)	1179, 1390, 1923, 1972
DdeI	CTNAG	8 cut(s)	218, 456, 494, 831, 840, 1191, 1290, 1295
DpnI	GATC	9 cut(s)	134, 426, 444, 1022, 1155, 1188, 1893, 2091, 2202
DpnII	GATC	9 cut(s)	132, 424, 442, 1020, 1153, 1186, 1891, 2089, 2200
DraI	TTTAAA	3 cut(s)	60, 420, 1302
DraIII	CACNNNGTG	3 cut(s)	1221, 1819, 1957
DrdI	GACNNNNNNGTC	1 cut(s)	2168
DriI	GACNNNNNGTC	1 cut(s)	2213
DseDI	GACNNNNNNGTC	1 cut(s)	2168
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	3 cut(s)	732, 921, 2135
Eam1105I	GACNNNNNGTC	1 cut(s)	2213
EarI	CTCTTC	3 cut(s)	732, 921, 2135
EciI	GGCGGA	1 cut(s)	2123
Ecl136II	GAGCTC	3 cut(s)	675, 1108, 1294
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	3 cut(s)	677, 1110, 1296
Eco47I	GGWCC	5 cut(s)	29, 214, 473, 1369, 1774
Eco53kI	GAGCTC	3 cut(s)	675, 1108, 1294
Eco57I	CTGAAG	2 cut(s)	93, 885
Eco72I	CACGTG	1 cut(s)	2213
Eco88I	CYCGRG	1 cut(s)	1320
Eco91I	GGTNACC	1 cut(s)	34
EcoICRI	GAGCTC	3 cut(s)	675, 1108, 1294
EcoO109I	RGGNCCY	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	34
EcoRII	CCWGG	3 cut(s)	204, 469, 1776
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	3 cut(s)	677, 1110, 1296
ErhI	CCWWGG	1 cut(s)	127
FalI	AAGNNNNNCTT	2 cut(s)	1035, 1067
FbaI	TGATCA	2 cut(s)	1020, 2089
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	5 cut(s)	650, 992, 1725, 1884, 2118
FokI	GGATG	3 cut(s)	785, 818, 1091
FriOI	GRGCYC	3 cut(s)	677, 1110, 1296
Fsp4HI	GCNGC	5 cut(s)	650, 992, 1725, 1884, 2118
FspBI	CTAG	6 cut(s)	393, 801, 1437, 1451, 2031, 2195
GlaI	GCGC	1 cut(s)	952
GluI	GCNGC	5 cut(s)	650, 992, 1725, 1884, 2118
GsaI	CCCAGC	2 cut(s)	1837, 1922
GsuI	CTGGAG	2 cut(s)	661, 1625
HaeIII	GGCC	5 cut(s)	126, 231, 1098, 1478, 1906
HapII	CCGG	3 cut(s)	32, 670, 1242
HhaI	GCGC	1 cut(s)	953
Hin6I	GCGC	1 cut(s)	951
HinP1I	GCGC	1 cut(s)	951
HincII	GTYRAC	2 cut(s)	601, 726
HindII	GTYRAC	2 cut(s)	601, 726
HindIII	AAGCTT	1 cut(s)	405
HpaII	CCGG	3 cut(s)	32, 670, 1242
HphI	GGTGA	3 cut(s)	28, 1159, 1802
Hpy166II	GTNNAC	4 cut(s)	601, 726, 1822, 1925
Hpy188I	TCNGA	7 cut(s)	244, 745, 1158, 1194, 1465, 2094, 2174
Hpy8I	GTNNAC	4 cut(s)	601, 726, 1822, 1925
Hpy99I	CGWCG	1 cut(s)	727
HpyAV	CCTTC	8 cut(s)	272, 273, 908, 1666, 1708, 1749, 1928, 2161
HpyCH4III	ACNGT	2 cut(s)	1178, 1955
HpyCH4IV	ACGT	2 cut(s)	722, 2212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1415, 1724
HpyF3I	CTNAG	8 cut(s)	218, 456, 494, 831, 840, 1191, 1290, 1295
HpySE526I	ACGT	2 cut(s)	722, 2212
HspAI	GCGC	1 cut(s)	951
Ksp22I	TGATCA	2 cut(s)	1020, 2089
Kzo9I	GATC	9 cut(s)	132, 424, 442, 1020, 1153, 1186, 1891, 2089, 2200
LguI	GCTCTTC	1 cut(s)	921
LmnI	GCTCC	4 cut(s)	672, 680, 1105, 1783
Lsp1109I	GCAGC	5 cut(s)	661, 1003, 1711, 1895, 2104
LweI	GCATC	5 cut(s)	175, 1185, 1306, 1711, 2144
MaeI	CTAG	6 cut(s)	393, 801, 1437, 1451, 2031, 2195
MaeII	ACGT	2 cut(s)	722, 2212
MalI	GATC	9 cut(s)	134, 426, 444, 1022, 1155, 1188, 1893, 2091, 2202
MboI	GATC	9 cut(s)	132, 424, 442, 1020, 1153, 1186, 1891, 2089, 2200
MfeI	CAATTG	1 cut(s)	2061
MflI	RGATCY	2 cut(s)	132, 1891
MhlI	GDGCHC	6 cut(s)	677, 1110, 1134, 1296, 1788, 1824
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	6 cut(s)	61, 978, 1278, 1394, 1704, 2061
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	5 cut(s)	120, 703, 749, 1556, 1871
MmeI	TCCRAC	2 cut(s)	1684, 2050
Mox20I	TGGCCA	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	2129
MscI	TGGCCA	1 cut(s)	231
MslI	CAYNNNNRTG	5 cut(s)	771, 1533, 1815, 1965, 1992
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	2 cut(s)	386, 1886
MspI	CCGG	3 cut(s)	32, 670, 1242
MspR9I	CCNGG	4 cut(s)	206, 471, 1242, 1778
MunI	CAATTG	1 cut(s)	2061
MvaI	CCWGG	3 cut(s)	206, 471, 1778
MwoI	GCNNNNNNNGC	2 cut(s)	1415, 1724
NciI	CCSGG	1 cut(s)	1242
NdeII	GATC	9 cut(s)	132, 424, 442, 1020, 1153, 1186, 1891, 2089, 2200
NlaIV	GGNNCC	4 cut(s)	284, 888, 2050, 2132
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	6 cut(s)	812, 943, 1033, 1065, 1165, 1982
NspI	RCATGY	2 cut(s)	656, 1964
NspV	TTCGAA	1 cut(s)	622
PaeI	GCATGC	2 cut(s)	656, 1964
PaeR7I	CTCGAG	1 cut(s)	1320
PagI	TCATGA	2 cut(s)	766, 1855
PciSI	GCTCTTC	1 cut(s)	921
PdmI	GAANNNNTTC	1 cut(s)	2129
PfeI	GAWTC	5 cut(s)	329, 557, 1765, 2027, 2095
PflMI	CCANNNNNTGG	1 cut(s)	1901
PkrI	GCNGC	5 cut(s)	651, 993, 1726, 1885, 2119
PleI	GAGTC	5 cut(s)	119, 703, 748, 1556, 1870
PmaCI	CACGTG	1 cut(s)	2213
PmlI	CACGTG	1 cut(s)	2213
PpsI	GAGTC	5 cut(s)	119, 703, 748, 1556, 1870
Ppu21I	YACGTR	1 cut(s)	2213
PpuMI	RGGWCCY	1 cut(s)	214
Psp124BI	GAGCTC	3 cut(s)	677, 1110, 1296
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	3 cut(s)	204, 469, 1776
PspCI	CACGTG	1 cut(s)	2213
PspEI	GGTNACC	1 cut(s)	34
PspFI	CCCAGC	2 cut(s)	1833, 1918
PspGI	CCWGG	3 cut(s)	204, 469, 1776
PspN4I	GGNNCC	4 cut(s)	284, 888, 2050, 2132
PspPI	GGNCC	7 cut(s)	29, 124, 214, 473, 1369, 1774, 1904
PspPPI	RGGWCCY	1 cut(s)	214
PstI	CTGCAG	3 cut(s)	363, 895, 1544
PsuI	RGATCY	2 cut(s)	132, 1891
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	4 cut(s)	1180, 1391, 1924, 1973
RsaNI	GTAC	4 cut(s)	1179, 1390, 1923, 1972
RseI	CAYNNNNRTG	5 cut(s)	771, 1533, 1815, 1965, 1992
SacI	GAGCTC	3 cut(s)	677, 1110, 1296
SalI	GTCGAC	1 cut(s)	724
SapI	GCTCTTC	1 cut(s)	921
SatI	GCNGC	5 cut(s)	650, 992, 1725, 1884, 2118
Sau3AI	GATC	9 cut(s)	132, 424, 442, 1020, 1153, 1186, 1891, 2089, 2200
Sau96I	GGNCC	7 cut(s)	29, 124, 214, 473, 1369, 1774, 1904
ScaI	AGTACT	1 cut(s)	1973
SchI	GAGTC	5 cut(s)	120, 703, 749, 1556, 1871
ScrFI	CCNGG	4 cut(s)	206, 471, 1242, 1778
SduI	GDGCHC	6 cut(s)	677, 1110, 1134, 1296, 1788, 1824
SfaNI	GCATC	5 cut(s)	175, 1185, 1306, 1711, 2144
SfcI	CTRYAG	4 cut(s)	359, 387, 891, 1540
Sfr274I	CTCGAG	1 cut(s)	1320
SfuI	TTCGAA	1 cut(s)	622
SinI	GGWCC	5 cut(s)	29, 214, 473, 1369, 1774
SlaI	CTCGAG	1 cut(s)	1320
SmiI	ATTTAAAT	1 cut(s)	60
SmiMI	CAYNNNNRTG	5 cut(s)	771, 1533, 1815, 1965, 1992
SmlI	CTYRAG	3 cut(s)	302, 1320, 1384
SmoI	CTYRAG	3 cut(s)	302, 1320, 1384
SphI	GCATGC	2 cut(s)	656, 1964
Sse9I	AATT	6 cut(s)	61, 978, 1278, 1394, 1704, 2061
SsiI	CCGC	5 cut(s)	96, 596, 1566, 1886, 2134
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	6 cut(s)	393, 801, 1437, 1451, 2031, 2195
SstI	GAGCTC	3 cut(s)	677, 1110, 1296
StyD4I	CCNGG	4 cut(s)	204, 469, 1240, 1776
StyI	CCWWGG	1 cut(s)	127
SwaI	ATTTAAAT	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	1178, 1955
TaiI	ACGT	2 cut(s)	725, 2215
TaqI	TCGA	5 cut(s)	441, 622, 725, 1321, 2160
TasI	AATT	6 cut(s)	61, 978, 1278, 1394, 1704, 2061
TatI	WGTACW	1 cut(s)	1971
TfiI	GAWTC	5 cut(s)	329, 557, 1765, 2027, 2095
TscAI	CASTG	7 cut(s)	685, 760, 835, 1074, 1189, 1342, 1960
TseFI	GTSAC	6 cut(s)	812, 943, 1033, 1065, 1165, 1982
TseI	GCWGC	5 cut(s)	649, 991, 1724, 1883, 2117
Tsp45I	GTSAC	6 cut(s)	812, 943, 1033, 1065, 1165, 1982
TspGWI	ACGGA	1 cut(s)	2207
TspRI	CASTG	7 cut(s)	685, 760, 835, 1074, 1189, 1342, 1960
Van91I	CCANNNNNTGG	1 cut(s)	1901
VneI	GTGCAC	1 cut(s)	1820
VpaK11BI	GGWCC	5 cut(s)	29, 214, 473, 1369, 1774
XapI	RAATTY	2 cut(s)	978, 1394
XbaI	TCTAGA	2 cut(s)	1450, 2030
XceI	RCATGY	2 cut(s)	656, 1964
XhoI	CTCGAG	1 cut(s)	1320
XmiI	GTMKAC	1 cut(s)	725
XmnI	GAANNNNTTC	1 cut(s)	2129
XspI	CTAG	6 cut(s)	393, 801, 1437, 1451, 2031, 2195
ZrmI	AGTACT	1 cut(s)	1973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.