Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008778

Physical Location & Seq

Genomic Coordinates Reverse (-)

12641481 .. 12646705

Gene Structure 5225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2397 bp

ATGGGGAAAGTTCGGGTGAATATCAATGGTCCAGTAACCAATAAAGACAGTGTGGATTTAAATTGCCATACTGAAGATGAGGACAAGGAGATTAGCGGTCCTGTTACAGGAGTCTTGGGAGAGGGCCAAGGGATCTTAAAGGAAGATGAAGTCAAGGTTACTGACAATCTGCAAGTCATAAATGATGCACAAACAGAAGCAGTCCAGGTTCAGGTCCTCAGTCAGTCTGGCCAGCAGAGTTCGGAACAACAGCTTCAGGACCCTTCTCTTTGCTGGGAAGGGTTCCTGCCTACCAAGTCTCTCAAGGTTTTGGTAGTGGAAGATGATGATTCAACTCGGCGTGTCATTTGTGCATTACTGCGGAAGTGTGGCTATGAAGTAACAGCTGTAGCTAGTGGATTGCAAGCTTGGAATGTTTTAAAAGATCATAGTATTCATGTCGATCTTGTTTTAACTGAGGTTGTCATGCCTGGTCCATCAGGCATTGACCTCCTAAGCAAGATGATGAGCCACAAAACTTGCAAGGATATTCCTGTGATTAGTGAGTATATTTCTCAAACATTTTTGTCCATAAAACTGAGGATCCTAAAACTGATTACCGATAGAATATTTAACAACTTAATTGGCACTATAGCTGCTAAACCTGGTCTGTTTTGTGCAGTGATGTCATCTAATGATTCTTTGAGTATGGTGTTTAAGTGTCTATCAAAGGGTGCAGTTGACTTTTTAGTGAAGCCTATTCGAAAGAACGAGCTTAAAAATCTTTGGCAGCATGCTTGGAGGAAATGCCGGAGCTCCAGTGGTAGTGCAAGTGAAAATGGTGTCCAGACTCAAAAAACTTTGTCGACAAGTGATGAAGAGTCAGACAAAAACACTGGCAGTAATCATGAGGATGACAATGAAATCATTGGGGTTAATGCTAGGGATGAAAGTGACAAAGGAAGTGGCACTGAGATTACTCAGGCGATTATTCGTTCAAGTCCTGAAGCATTTGGAAATGACTTGGTTCCTGCAGTTACAACAAGGGAGTGCGAAGGGCAGAATGAAGAGCTTGGTGCTGTTATCACAGGCGCAGACTTGGGTATGGGAGTTCCTAAAATTCCAAATCTGCAGCTTGAAGAACCAAAAGAGAAAGGCTTGATCAACATAGTTGTCACTAATAAAGACAAACTTTCTAAAATGAAGTCACTGAAAGAGGATGATAAGCTAAAGAAAGGCCAAGTGGAGCTCAACAATGAAAAACCAAATGAGCACTTGGAAAACCAAGCAGTTGATCTGATAGGTGTCACCACTAACAGTACCACTGACCCTCAGATGCAAAGTGGTATGTTTAACATCCCATGTAGTGTCTCCAAAGTTCCAGGCATAAGAGATAAGGACATCAATGACAGCAAAGAAATTGCTTCCCTTGAGCTCAGTTTAAAGACACAGACAGATGCTCGAGATACTGGGTTCAGTGTCCATGACCAAAATGCTTTGAGACATTTGGACCTTTCAGCCCCCTCAGGGTACAATTTTCCTACAACTGCTAATCAGGCTGGAAGTGTGAAACTTGCTAGTCATTCTCCTCTAGATAGTATATCGGAGGAAGAAAAGGCCAAACTATTGCCTTTTTTTCTGTGTAACCTAACCAGCACTCCACTTTATCATTCCAATGACTGCAGTAACAACAACTGCATGGACTCCGCTACAAATGATTTCCTTACAGAACAAAAGGCAGTTGAGGACAAACCAGAGCTGAAATCAACAATCAAACATCTCCAGTCTTCCTCTGCCATCCAACCACACCATGATAGCCTTTTATCTTTTTCCCACCAGCCTATAATTCAAGGGAAGGCTGATGCTGCATTTGGTAGCACTATATTGGCACAAGCAAGGGGCATGAATCAGCAGGTCCAGGTGGAGCACCATCATCTCCATTACCACCATCACCACCATGTGCACAGCATACCCCAGCACCAGCAGATACCCAATCATGATGAGTCGTCTGGAAAAAATATGGCAGCGGAAGATCCATGCTTTGGGCCATCTGATGTGCTGGGTACACCGATAGAAGGGAATGTTGGTAATCACAGTTTGCATGGGAGTGAGTACTCTGGAAGTGACCATAGTAGTGATGAACAGAATATAAGTAGCTCTCCCATAGATTCTATAGGAGAAAAAGAGGGAACCATCAGCCCAATTGAAGTTGGAAGCAAAAGTGGAGTTGATCAGAATCATGTATCAAAAAGAGAGGCTGCTTTAAATAGATTCCGCCAGAAGAGGAAAGAGAGATGCTTCGACAAGAAGGTCAGATACCAAAGCAGGAAGAAACTAGCAGATCAAAGACCACGTGTCCGTAGAAAGTTTGTTCAACAGGAGGTGCATGAAAACAAAGGCAAGGACACCCATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

798

Amino Acids

87.72

Weight (kDa)

5.84

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	103 - 180	2.7e-12	Response regulator receiver domain
CCT	PF06203	744 - 786	3.1e-15	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100
malus_domestica	MD01G1114400.v1.1 MD07G1182300.v1.1 MD07G1182500.v1.1
pyrus_communis	pycom01g14340 pycom07g17500
rosa_chinensis	RchiOBHm_Chr1g0364431
rosa_laevigata	RLG00000027480
rosa_multiflora	Rmu_sc0001342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291850 Rroxscaffold_4G00292280
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324400 Rh1BG287100 Rh1CG303700 Rh1DG318600
rosa_wichuraiana	Rw1G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2288
Acc36I	ACCTGC	1 cut(s)	1882
AccB7I	CCANNNNNTGG	1 cut(s)	2021
AccI	GTMKAC	1 cut(s)	845
AciI	CCGC	5 cut(s)	96, 361, 1686, 2006, 2254
AclWI	GGATC	4 cut(s)	140, 577, 590, 2006
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	1098
AcuI	CTGAAG	3 cut(s)	93, 239, 1005
AcvI	CACGTG	1 cut(s)	2333
AdeI	CACNNNGTG	1 cut(s)	1939
AfaI	GTAC	4 cut(s)	1300, 1511, 2044, 2093
AfiI	CCNNNNNNNGG	5 cut(s)	107, 211, 1506, 2021, 2054
AflIII	ACRYGT	1 cut(s)	2332
AgsI	TTSAA	6 cut(s)	333, 978, 1118, 1829, 2186, 2354
AhdI	GACNNNNNGTC	1 cut(s)	2333
AjnI	CCWGG	5 cut(s)	204, 469, 643, 1360, 1896
AjuI	GAANNNNNNNTTGG	2 cut(s)	2046, 2078
Alw21I	GWGCWC	6 cut(s)	797, 1230, 1254, 1416, 1908, 1944
Alw26I	GTCTC	3 cut(s)	303, 1354, 1474
Alw44I	GTGCAC	1 cut(s)	1940
AlwI	GGATC	4 cut(s)	140, 577, 590, 2006
Ama87I	CYCGRG	1 cut(s)	1440
AoxI	GGCC	5 cut(s)	124, 229, 1216, 1596, 2024
ApaLI	GTGCAC	1 cut(s)	1940
ApeKI	GCWGC	6 cut(s)	635, 769, 1111, 1844, 2003, 2237
ApoI	RAATTY	1 cut(s)	1098
AspLEI	GCGC	1 cut(s)	1073
AspS9I	GGNCC	9 cut(s)	29, 98, 124, 214, 259, 473, 1489, 1894, 2024
AsuHPI	GGTGA	3 cut(s)	28, 1279, 1922
AsuII	TTCGAA	1 cut(s)	742
AvaI	CYCGRG	1 cut(s)	1440
AvaII	GGWCC	7 cut(s)	29, 98, 214, 259, 473, 1489, 1894
AxyI	CCTNAGG	1 cut(s)	1504
BaeGI	GKGCMC	1 cut(s)	1944
BalI	TGGCCA	1 cut(s)	231
BamHI	GGATCC	1 cut(s)	582
BanII	GRGCYC	3 cut(s)	797, 1230, 1416
BarI	GAAGNNNNNNTAC	2 cut(s)	2279, 2311
BbrPI	CACGTG	1 cut(s)	2333
BbsI	GAAGAC	1 cut(s)	1758
Bbv12I	GWGCWC	6 cut(s)	797, 1230, 1254, 1416, 1908, 1944
BbvI	GCAGC	6 cut(s)	622, 781, 1123, 1831, 2015, 2224
BccI	CCATC	6 cut(s)	484, 1784, 1917, 1935, 2035, 2180
BciT130I	CCWGG	5 cut(s)	206, 471, 645, 1362, 1898
BclI	TGATCA	2 cut(s)	1140, 2209
BcoDI	GTCTC	3 cut(s)	303, 1354, 1474
BfaI	CTAG	5 cut(s)	393, 921, 1557, 1571, 2315
BfmI	CTRYAG	6 cut(s)	387, 630, 1011, 1109, 1660, 2151
BfuAI	ACCTGC	1 cut(s)	1882
BisI	GCNGC	6 cut(s)	636, 770, 1112, 1845, 2004, 2238
BlsI	GCNGC	6 cut(s)	637, 771, 1113, 1846, 2005, 2239
BmcAI	AGTACT	1 cut(s)	2093
Bme1390I	CCNGG	5 cut(s)	206, 471, 645, 1362, 1898
Bme18I	GGWCC	7 cut(s)	29, 98, 214, 259, 473, 1489, 1894
BmeRI	GACNNNNNGTC	1 cut(s)	2333
BmeT110I	CYCGRG	1 cut(s)	1440
BmgT120I	GGNCC	9 cut(s)	29, 98, 124, 214, 259, 473, 1489, 1894, 2024
BmiI	GGNNCC	5 cut(s)	261, 284, 584, 1008, 2170
BmrFI	CCNGG	5 cut(s)	206, 471, 645, 1362, 1898
BmrI	ACTGGG	1 cut(s)	1458
BmsI	GCATC	5 cut(s)	175, 1305, 1426, 1831, 2264
BmuI	ACTGGG	1 cut(s)	1458
BpiI	GAAGAC	1 cut(s)	1758
BpmI	CTGGAG	2 cut(s)	781, 1745
Bpu10I	CCTNAGC	1 cut(s)	494
Bpu14I	TTCGAA	1 cut(s)	742
BpuEI	CTTGAG	2 cut(s)	287, 1430
BsaAI	YACGTR	1 cut(s)	2333
BsaBI	GATNNNNATC	1 cut(s)	2214
BsaJI	CCNNGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	4 cut(s)	784, 814, 1621, 1651
Bsc4I	CCNNNNNNNGG	5 cut(s)	107, 211, 1506, 2021, 2054
Bse1I	ACTGG	5 cut(s)	32, 798, 880, 1453, 1762
Bse21I	CCTNAGG	1 cut(s)	1504
Bse3DI	GCAATG	1 cut(s)	2389
Bse8I	GATNNNNATC	1 cut(s)	2214
BseBI	CCWGG	5 cut(s)	206, 471, 645, 1362, 1898
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	5 cut(s)	898, 931, 1204, 1335, 1776
BseJI	GATNNNNATC	1 cut(s)	2214
BseLI	CCNNNNNNNGG	5 cut(s)	107, 211, 1506, 2021, 2054
BseMI	GCAATG	1 cut(s)	2389
BseMII	CTCAG	8 cut(s)	232, 447, 569, 942, 974, 1325, 1429, 1518
BseNI	ACTGG	5 cut(s)	32, 798, 880, 1453, 1762
BseRI	GAGGAG	1 cut(s)	1557
BseSI	GKGCMC	1 cut(s)	1944
BseXI	GCAGC	6 cut(s)	622, 781, 1123, 1831, 2015, 2224
BseYI	CCCAGC	3 cut(s)	273, 1953, 2038
BsgI	GTGCAG	2 cut(s)	678, 735
BshFI	GGCC	5 cut(s)	126, 231, 1218, 1598, 2026
BsiHKAI	GWGCWC	6 cut(s)	797, 1230, 1254, 1416, 1908, 1944
BsiHKCI	CYCGRG	1 cut(s)	1440
BsiSI	CCGG	1 cut(s)	790
BslI	CCNNNNNNNGG	5 cut(s)	107, 211, 1506, 2021, 2054
BsmAI	GTCTC	3 cut(s)	303, 1354, 1474
BsnI	GGCC	5 cut(s)	126, 231, 1218, 1598, 2026
BsoBI	CYCGRG	1 cut(s)	1440
Bsp119I	TTCGAA	1 cut(s)	742
Bsp1286I	GDGCHC	6 cut(s)	797, 1230, 1254, 1416, 1908, 1944
Bsp143I	GATC	9 cut(s)	132, 424, 442, 582, 1140, 1273, 2011, 2209, 2320
BspACI	CCGC	5 cut(s)	96, 361, 1686, 2006, 2254
BspANI	GGCC	5 cut(s)	126, 231, 1218, 1598, 2026
BspCNI	CTCAG	8 cut(s)	231, 448, 570, 943, 973, 1324, 1428, 1517
BspHI	TCATGA	2 cut(s)	886, 1975
BspLI	GGNNCC	5 cut(s)	261, 284, 584, 1008, 2170
BspMAI	CTGCAG	3 cut(s)	1015, 1113, 1664
BspMI	ACCTGC	1 cut(s)	1882
BspPI	GGATC	4 cut(s)	140, 577, 590, 2006
BspQI	GCTCTTC	1 cut(s)	1041
BspT104I	TTCGAA	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	2389
BsrI	ACTGG	5 cut(s)	32, 798, 880, 1453, 1762
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	9 cut(s)	132, 424, 442, 582, 1140, 1273, 2011, 2209, 2320
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	5 cut(s)	206, 471, 645, 1362, 1898
Bst4CI	ACNGT	3 cut(s)	50, 1298, 2075
Bst6I	CTCTTC	3 cut(s)	852, 1041, 2255
BstBAI	YACGTR	1 cut(s)	2333
BstBI	TTCGAA	1 cut(s)	742
BstC8I	GCNNGC	3 cut(s)	233, 405, 774
BstDEI	CTNAG	9 cut(s)	218, 456, 494, 578, 951, 960, 1311, 1415, 1504
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstF5I	GGATG	5 cut(s)	898, 931, 1204, 1335, 1776
BstHHI	GCGC	1 cut(s)	1073
BstKTI	GATC	9 cut(s)	135, 427, 445, 585, 1143, 1276, 2014, 2212, 2323
BstMAI	GTCTC	3 cut(s)	303, 1354, 1474
BstMBI	GATC	9 cut(s)	132, 424, 442, 582, 1140, 1273, 2011, 2209, 2320
BstMWI	GCNNNNNNNGC	2 cut(s)	1535, 1844
BstNI	CCWGG	5 cut(s)	206, 471, 645, 1362, 1898
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	5 cut(s)	204, 469, 643, 1360, 1896
BstSFI	CTRYAG	6 cut(s)	387, 630, 1011, 1109, 1660, 2151
BstSLI	GKGCMC	1 cut(s)	1944
BstV1I	GCAGC	6 cut(s)	622, 781, 1123, 1831, 2015, 2224
BstV2I	GAAGAC	1 cut(s)	1758
BstX2I	RGATCY	3 cut(s)	132, 582, 2011
BstYI	RGATCY	3 cut(s)	132, 582, 2011
Bsu36I	CCTNAGG	1 cut(s)	1504
BsuRI	GGCC	5 cut(s)	126, 231, 1218, 1598, 2026
BtsCI	GGATG	5 cut(s)	898, 931, 1204, 1335, 1776
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	8 cut(s)	55, 666, 805, 873, 948, 1187, 1302, 1462
BveI	ACCTGC	1 cut(s)	1882
Cac8I	GCNNGC	3 cut(s)	233, 405, 774
CciI	TCATGA	2 cut(s)	886, 1975
CfoI	GCGC	1 cut(s)	1073
Cfr13I	GGNCC	9 cut(s)	29, 98, 124, 214, 259, 473, 1489, 1894, 2024
CsiI	ACCWGGT	1 cut(s)	643
Csp6I	GTAC	4 cut(s)	1299, 1510, 2043, 2092
CspCI	CAANNNNNGTGG	4 cut(s)	500, 535, 925, 960
CviQI	GTAC	4 cut(s)	1299, 1510, 2043, 2092
DdeI	CTNAG	9 cut(s)	218, 456, 494, 578, 951, 960, 1311, 1415, 1504
DpnI	GATC	9 cut(s)	134, 426, 444, 584, 1142, 1275, 2013, 2211, 2322
DpnII	GATC	9 cut(s)	132, 424, 442, 582, 1140, 1273, 2011, 2209, 2320
DraI	TTTAAA	4 cut(s)	60, 420, 1422, 2244
DraIII	CACNNNGTG	1 cut(s)	1939
DrdI	GACNNNNNNGTC	1 cut(s)	2288
DriI	GACNNNNNGTC	1 cut(s)	2333
DseDI	GACNNNNNNGTC	1 cut(s)	2288
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	3 cut(s)	852, 1041, 2255
Eam1105I	GACNNNNNGTC	1 cut(s)	2333
EarI	CTCTTC	3 cut(s)	852, 1041, 2255
EciI	GGCGGA	1 cut(s)	2243
Ecl136II	GAGCTC	3 cut(s)	795, 1228, 1414
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	3 cut(s)	797, 1230, 1416
Eco47I	GGWCC	7 cut(s)	29, 98, 214, 259, 473, 1489, 1894
Eco53kI	GAGCTC	3 cut(s)	795, 1228, 1414
Eco57I	CTGAAG	3 cut(s)	93, 239, 1005
Eco72I	CACGTG	1 cut(s)	2333
Eco81I	CCTNAGG	1 cut(s)	1504
Eco88I	CYCGRG	1 cut(s)	1440
EcoICRI	GAGCTC	3 cut(s)	795, 1228, 1414
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoO109I	RGGNCCY	2 cut(s)	214, 259
EcoRII	CCWGG	5 cut(s)	204, 469, 643, 1360, 1896
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	3 cut(s)	797, 1230, 1416
ErhI	CCWWGG	1 cut(s)	127
FalI	AAGNNNNNCTT	2 cut(s)	1155, 1187
FbaI	TGATCA	2 cut(s)	1140, 2209
FblI	GTMKAC	1 cut(s)	845
Fnu4HI	GCNGC	6 cut(s)	636, 770, 1112, 1845, 2004, 2238
FokI	GGATG	5 cut(s)	905, 938, 1211, 1322, 1763
FriOI	GRGCYC	3 cut(s)	797, 1230, 1416
Fsp4HI	GCNGC	6 cut(s)	636, 770, 1112, 1845, 2004, 2238
FspBI	CTAG	5 cut(s)	393, 921, 1557, 1571, 2315
GlaI	GCGC	1 cut(s)	1072
GluI	GCNGC	6 cut(s)	636, 770, 1112, 1845, 2004, 2238
GsaI	CCCAGC	3 cut(s)	277, 1957, 2042
GsuI	CTGGAG	2 cut(s)	781, 1745
HaeIII	GGCC	5 cut(s)	126, 231, 1218, 1598, 2026
HapII	CCGG	1 cut(s)	790
HhaI	GCGC	1 cut(s)	1073
Hin6I	GCGC	1 cut(s)	1071
HinP1I	GCGC	1 cut(s)	1071
HincII	GTYRAC	2 cut(s)	721, 846
HindII	GTYRAC	2 cut(s)	721, 846
HindIII	AAGCTT	1 cut(s)	405
HpaII	CCGG	1 cut(s)	790
HphI	GGTGA	3 cut(s)	28, 1279, 1922
Hpy166II	GTNNAC	4 cut(s)	721, 846, 1942, 2045
Hpy188I	TCNGA	8 cut(s)	244, 865, 1278, 1314, 1585, 2032, 2214, 2294
Hpy188III	TCNNGA	9 cut(s)	257, 826, 887, 983, 1442, 1571, 1976, 1989, 2097
Hpy8I	GTNNAC	4 cut(s)	721, 846, 1942, 2045
HpyAV	CCTTC	6 cut(s)	272, 273, 1028, 1828, 2048, 2281
HpyCH4III	ACNGT	3 cut(s)	50, 1298, 2075
HpyCH4IV	ACGT	1 cut(s)	2332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1535, 1844
HpyF3I	CTNAG	9 cut(s)	218, 456, 494, 578, 951, 960, 1311, 1415, 1504
HpySE526I	ACGT	1 cut(s)	2332
HspAI	GCGC	1 cut(s)	1071
Ksp22I	TGATCA	2 cut(s)	1140, 2209
Kzo9I	GATC	9 cut(s)	132, 424, 442, 582, 1140, 1273, 2011, 2209, 2320
LguI	GCTCTTC	1 cut(s)	1041
LmnI	GCTCC	4 cut(s)	792, 800, 1225, 1903
Lsp1109I	GCAGC	6 cut(s)	622, 781, 1123, 1831, 2015, 2224
LweI	GCATC	5 cut(s)	175, 1305, 1426, 1831, 2264
MabI	ACCWGGT	1 cut(s)	643
MaeI	CTAG	5 cut(s)	393, 921, 1557, 1571, 2315
MaeII	ACGT	1 cut(s)	2332
MalI	GATC	9 cut(s)	134, 426, 444, 584, 1142, 1275, 2013, 2211, 2322
MboI	GATC	9 cut(s)	132, 424, 442, 582, 1140, 1273, 2011, 2209, 2320
MfeI	CAATTG	1 cut(s)	2181
MflI	RGATCY	3 cut(s)	132, 582, 2011
MhlI	GDGCHC	6 cut(s)	797, 1230, 1254, 1416, 1908, 1944
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	7 cut(s)	61, 621, 1098, 1398, 1513, 1824, 2181
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	5 cut(s)	120, 823, 869, 1676, 1991
MmeI	TCCRAC	2 cut(s)	1804, 2170
Mox20I	TGGCCA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	231
MslI	CAYNNNNRTG	5 cut(s)	891, 1653, 1935, 2085, 2112
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	2 cut(s)	386, 2006
MspI	CCGG	1 cut(s)	790
MspR9I	CCNGG	5 cut(s)	206, 471, 645, 1362, 1898
MunI	CAATTG	1 cut(s)	2181
MvaI	CCWGG	5 cut(s)	206, 471, 645, 1362, 1898
MwoI	GCNNNNNNNGC	2 cut(s)	1535, 1844
NdeII	GATC	9 cut(s)	132, 424, 442, 582, 1140, 1273, 2011, 2209, 2320
NlaIV	GGNNCC	5 cut(s)	261, 284, 584, 1008, 2170
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	5 cut(s)	932, 1153, 1185, 1285, 2102
NspI	RCATGY	1 cut(s)	776
NspV	TTCGAA	1 cut(s)	742
PaeI	GCATGC	1 cut(s)	776
PaeR7I	CTCGAG	1 cut(s)	1440
PagI	TCATGA	2 cut(s)	886, 1975
PciSI	GCTCTTC	1 cut(s)	1041
PfeI	GAWTC	6 cut(s)	329, 677, 1885, 2147, 2215, 2250
PflMI	CCANNNNNTGG	1 cut(s)	2021
PkrI	GCNGC	6 cut(s)	637, 771, 1113, 1846, 2005, 2239
PleI	GAGTC	5 cut(s)	119, 823, 868, 1676, 1990
PmaCI	CACGTG	1 cut(s)	2333
PmlI	CACGTG	1 cut(s)	2333
PpsI	GAGTC	5 cut(s)	119, 823, 868, 1676, 1990
Ppu21I	YACGTR	1 cut(s)	2333
PpuMI	RGGWCCY	2 cut(s)	214, 259
Psp124BI	GAGCTC	3 cut(s)	797, 1230, 1416
Psp5II	RGGWCCY	2 cut(s)	214, 259
Psp6I	CCWGG	5 cut(s)	204, 469, 643, 1360, 1896
PspCI	CACGTG	1 cut(s)	2333
PspFI	CCCAGC	3 cut(s)	273, 1953, 2038
PspGI	CCWGG	5 cut(s)	204, 469, 643, 1360, 1896
PspN4I	GGNNCC	5 cut(s)	261, 284, 584, 1008, 2170
PspPI	GGNCC	9 cut(s)	29, 98, 124, 214, 259, 473, 1489, 1894, 2024
PspPPI	RGGWCCY	2 cut(s)	214, 259
PstI	CTGCAG	3 cut(s)	1015, 1113, 1664
PsuI	RGATCY	3 cut(s)	132, 582, 2011
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	4 cut(s)	1300, 1511, 2044, 2093
RsaNI	GTAC	4 cut(s)	1299, 1510, 2043, 2092
RseI	CAYNNNNRTG	5 cut(s)	891, 1653, 1935, 2085, 2112
SacI	GAGCTC	3 cut(s)	797, 1230, 1416
SalI	GTCGAC	1 cut(s)	844
SapI	GCTCTTC	1 cut(s)	1041
SatI	GCNGC	6 cut(s)	636, 770, 1112, 1845, 2004, 2238
Sau3AI	GATC	9 cut(s)	132, 424, 442, 582, 1140, 1273, 2011, 2209, 2320
Sau96I	GGNCC	9 cut(s)	29, 98, 124, 214, 259, 473, 1489, 1894, 2024
ScaI	AGTACT	1 cut(s)	2093
SchI	GAGTC	5 cut(s)	120, 823, 869, 1676, 1991
ScrFI	CCNGG	5 cut(s)	206, 471, 645, 1362, 1898
SduI	GDGCHC	6 cut(s)	797, 1230, 1254, 1416, 1908, 1944
SexAI	ACCWGGT	1 cut(s)	643
SfaNI	GCATC	5 cut(s)	175, 1305, 1426, 1831, 2264
SfcI	CTRYAG	6 cut(s)	387, 630, 1011, 1109, 1660, 2151
Sfr274I	CTCGAG	1 cut(s)	1440
SfuI	TTCGAA	1 cut(s)	742
SinI	GGWCC	7 cut(s)	29, 98, 214, 259, 473, 1489, 1894
SlaI	CTCGAG	1 cut(s)	1440
SmiI	ATTTAAAT	1 cut(s)	60
SmiMI	CAYNNNNRTG	5 cut(s)	891, 1653, 1935, 2085, 2112
SmlI	CTYRAG	3 cut(s)	302, 1409, 1440
SmoI	CTYRAG	3 cut(s)	302, 1409, 1440
SphI	GCATGC	1 cut(s)	776
Sse9I	AATT	7 cut(s)	61, 621, 1098, 1398, 1513, 1824, 2181
SsiI	CCGC	5 cut(s)	96, 361, 1686, 2006, 2254
SspI	AATATT	1 cut(s)	609
SspMI	CTAG	5 cut(s)	393, 921, 1557, 1571, 2315
SstI	GAGCTC	3 cut(s)	797, 1230, 1416
StyD4I	CCNGG	5 cut(s)	204, 469, 643, 1360, 1896
StyI	CCWWGG	1 cut(s)	127
SwaI	ATTTAAAT	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	50, 1298, 2075
TaiI	ACGT	1 cut(s)	2335
TaqI	TCGA	5 cut(s)	441, 742, 845, 1441, 2280
TasI	AATT	7 cut(s)	61, 621, 1098, 1398, 1513, 1824, 2181
TatI	WGTACW	1 cut(s)	2091
TfiI	GAWTC	6 cut(s)	329, 677, 1885, 2147, 2215, 2250
TscAI	CASTG	8 cut(s)	55, 666, 805, 880, 955, 1194, 1309, 1462
TseFI	GTSAC	5 cut(s)	932, 1153, 1185, 1285, 2102
TseI	GCWGC	6 cut(s)	635, 769, 1111, 1844, 2003, 2237
Tsp45I	GTSAC	5 cut(s)	932, 1153, 1185, 1285, 2102
TspGWI	ACGGA	1 cut(s)	2327
TspRI	CASTG	8 cut(s)	55, 666, 805, 880, 955, 1194, 1309, 1462
Van91I	CCANNNNNTGG	1 cut(s)	2021
VneI	GTGCAC	1 cut(s)	1940
VpaK11BI	GGWCC	7 cut(s)	29, 98, 214, 259, 473, 1489, 1894
XagI	CCTNNNNNAGG	1 cut(s)	105
XapI	RAATTY	1 cut(s)	1098
XbaI	TCTAGA	1 cut(s)	1570
XceI	RCATGY	1 cut(s)	776
XhoI	CTCGAG	1 cut(s)	1440
XmiI	GTMKAC	1 cut(s)	845
XspI	CTAG	5 cut(s)	393, 921, 1557, 1571, 2315
ZrmI	AGTACT	1 cut(s)	2093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.