Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008778

Physical Location & Seq

Genomic Coordinates Forward (+)

26287033 .. 26289075

Gene Structure 2043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1182500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGCGAGATAGGAGAGTAGGAGAGATCATTCAGGCTAATCCTTCAAGGGCTGACACATTTGGCAATGACGGGGTGCCTGCATTTAAAACTAGCGAGTGCGAAGGCCAGGATGAAGAGCTTGATGATATTGTCGTGGGTAAAGAAGACTTGGCTGTAGGACTTCCCAGAACTTCAGTTTTGCAGCTTGATGAACCAAAAGAAAAAGGGTTAACCAACACGGCCAGTGCTAATAAAAACAAACTTTCAGAAACTGACTCAATGATCGGAGGTGAACAAATAGAGAAAGGACAACCAGAGCTCAACAATGAAAAACCAAATCGGGAATTGAGAAACCAGGCTGCTGATCTAATGGGTTGCATCGGCAACGGTACCACCGATCCTCAGATGCAATGTGTTATGTTTGACAGCCCAAATGGTGTATCCAAGGTTCCAGAGATAAAAGCTAAGACCATCCATGACAGTAAAGAAACTCCTTCTCTTGAGCTCACTTTAATGACGCAGAGAGATGTTCGAAATACTGGGTTCAGTGGTCATGATCGAAATGTTCTGAGACATTCAGACAATTCAGCCTTTTTAAGGTACAACTTTCCTACAAATTCTAAGCAGGCCCCATCTGGGAATGTTGGTAGCTATTCTTCTCTCGATAATAGCTTAGGGGCAGCGAAAGCAAAATCATTTCAAAATTTTCAATATAATTCGTATGGCACTCCTCTCTACCAGCGTTCCAATGGCTCTAGCAATAACAATGACACTGACTCAGCCACAAATAAGTTCTTTATCAATGAAGAGGCATCCGAAGACAAGGCAGAGCCGGGATCAACAATGAAATGTCTCCACGAATCCTCTGTCTTCCAACCAGACCATAACAGGTCTATGGCGTATAACCAGCCAATAGAACATGGTCATGCCGATGCTGCAGTCCATAACACAACTTTGTCACAAGGATGGAACATGAATCAGCATGTGCAAGTGCAGCAGCAGCACCATATGTATAACGTGCGTCAGCACCAGCAGATACTAAATAATGATGATTTGTCACTGAAAAATCTGGCAGCAGCAGCTCCACTGTGCGGGTCATCCGATGTGCAGTGTGTACCAATGGAAGGGAATGTTGGCAGTAACAGTTTGCACGGGTGTGCCTTAGAAAGAAACAACAGTAGCAACGGGCAGAGTGGGGGTAGCTTTGCCATAAATTCTAGGGGCACTTACACGGAATCTGGTAAGGACATAGCTGGAGAAGAAGGAACCATCAGTGCAACTGAAAATGGGAGCAAAAGTGGAGTTGATCAAAACCGTCGTGCACAAAGAGAGGCTGCTTTGCATAAATTCCGCCAGAAGAGGAAAGATAGATGTTTCGAGAAGAAGGTGAGATACCAGAGCAGGAAAAAACTGGCGGAACAAAGGCCGCGTGTTCGTGGACAGTTTGTTCGACAGGTGGTAAAAGAAAACAAAGGCAACGACACAGATAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

491

Amino Acids

54.0

Weight (kDa)

6.42

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	436 - 478	2.9e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100
malus_domestica	MD01G1114400.v1.1 MD07G1182300.v1.1 MD07G1182500.v1.1
pyrus_communis	pycom01g14340 pycom07g17500
rosa_chinensis	RchiOBHm_Chr1g0364431
rosa_laevigata	RLG00000027480
rosa_multiflora	Rmu_sc0001342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291850 Rroxscaffold_4G00292280
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324400 Rh1BG287100 Rh1CG303700 Rh1DG318600
rosa_wichuraiana	Rw1G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	368
AccB1I	GGYRCC	2 cut(s)	73, 368
AccII	CGCG	1 cut(s)	1408
AciI	CCGC	4 cut(s)	1071, 1330, 1394, 1406
AclWI	GGATC	2 cut(s)	371, 823
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	4 cut(s)	595, 682, 1192, 1325
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	3 cut(s)	370, 581, 1095
AfiI	CCNNNNNNNGG	4 cut(s)	576, 615, 1070, 1103
AgsI	TTSAA	3 cut(s)	45, 680, 689
AjnI	CCWGG	2 cut(s)	105, 333
AjuI	GAANNNNNNNTTGG	2 cut(s)	1095, 1127
AleI	CACNNNNGTG	1 cut(s)	1134
AloI	GAACNNNNNNTCC	2 cut(s)	1410, 1442
Alw21I	GWGCWC	3 cut(s)	300, 486, 1303
Alw26I	GTCTC	2 cut(s)	544, 836
Alw44I	GTGCAC	1 cut(s)	1299
AlwI	GGATC	2 cut(s)	371, 823
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	4 cut(s)	103, 219, 606, 1403
ApaLI	GTGCAC	1 cut(s)	1299
ApoI	RAATTY	4 cut(s)	595, 682, 1192, 1325
ArsI	GACNNNNNNTTYG	4 cut(s)	831, 863, 1410, 1442
Asp718I	GGTACC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	607
AsuC2I	CCSGG	1 cut(s)	813
AsuHPI	GGTGA	2 cut(s)	281, 1378
AsuII	TTCGAA	1 cut(s)	511
BaeGI	GKGCMC	2 cut(s)	1205, 1303
BanI	GGYRCC	2 cut(s)	73, 368
BanII	GRGCYC	2 cut(s)	300, 486
BarI	GAAGNNNNNNTAC	4 cut(s)	619, 651, 1355, 1387
BbsI	GAAGAC	3 cut(s)	150, 804, 841
Bbv12I	GWGCWC	3 cut(s)	300, 486, 1303
BccI	CCATC	4 cut(s)	458, 619, 939, 1256
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	2 cut(s)	107, 335
BciVI	GTATCC	1 cut(s)	430
BclI	TGATCA	1 cut(s)	1285
BcnI	CCSGG	1 cut(s)	813
BcoDI	GTCTC	2 cut(s)	544, 836
BfaI	CTAG	3 cut(s)	90, 735, 1197
BfmI	CTRYAG	2 cut(s)	153, 915
BfuI	GTATCC	1 cut(s)	430
Bme1390I	CCNGG	3 cut(s)	107, 335, 813
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	5 cut(s)	75, 370, 429, 609, 1246
BmrFI	CCNGG	3 cut(s)	107, 335, 813
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	4 cut(s)	366, 375, 800, 901
BmuI	ACTGGG	1 cut(s)	528
BpiI	GAAGAC	3 cut(s)	150, 804, 841
BpmI	CTGGAG	1 cut(s)	1254
Bpu10I	CCTNAGC	1 cut(s)	652
Bpu14I	TTCGAA	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	813
BsaJI	CCNNGG	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	1261, 1291
Bsc4I	CCNNNNNNNGG	4 cut(s)	576, 615, 1070, 1103
Bse1I	ACTGG	3 cut(s)	222, 523, 1395
Bse3DI	GCAATG	2 cut(s)	70, 395
BseBI	CCWGG	2 cut(s)	107, 335
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	5 cut(s)	115, 450, 791, 950, 1076
BseLI	CCNNNNNNNGG	4 cut(s)	576, 615, 1070, 1103
BseMI	GCAATG	2 cut(s)	70, 395
BseMII	CTCAG	3 cut(s)	395, 539, 771
BseNI	ACTGG	3 cut(s)	222, 523, 1395
BseRI	GAGGAG	1 cut(s)	699
BseSI	GKGCMC	2 cut(s)	1205, 1303
BsgI	GTGCAG	2 cut(s)	992, 1106
Bsh1236I	CGCG	1 cut(s)	1408
BshFI	GGCC	4 cut(s)	105, 221, 608, 1405
BshNI	GGYRCC	2 cut(s)	73, 368
BsiHKAI	GWGCWC	3 cut(s)	300, 486, 1303
BsiSI	CCGG	1 cut(s)	812
BslI	CCNNNNNNNGG	4 cut(s)	576, 615, 1070, 1103
BsmAI	GTCTC	2 cut(s)	544, 836
BsnI	GGCC	4 cut(s)	105, 221, 608, 1405
Bsp119I	TTCGAA	1 cut(s)	511
Bsp1286I	GDGCHC	4 cut(s)	300, 486, 1205, 1303
Bsp143I	GATC	7 cut(s)	24, 261, 343, 376, 535, 815, 1285
BspACI	CCGC	4 cut(s)	1071, 1330, 1394, 1406
BspANI	GGCC	4 cut(s)	105, 221, 608, 1405
BspCNI	CTCAG	3 cut(s)	394, 540, 770
BspFNI	CGCG	1 cut(s)	1408
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	5 cut(s)	75, 370, 429, 609, 1246
BspMAI	CTGCAG	1 cut(s)	919
BspPI	GGATC	2 cut(s)	371, 823
BspQI	GCTCTTC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	511
BspT107I	GGYRCC	2 cut(s)	73, 368
BsrDI	GCAATG	2 cut(s)	70, 395
BsrI	ACTGG	3 cut(s)	222, 523, 1395
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	7 cut(s)	24, 261, 343, 376, 535, 815, 1285
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	107, 335
Bst4CI	ACNGT	7 cut(s)	368, 461, 1068, 1124, 1157, 1295, 1422
Bst6I	CTCTTC	3 cut(s)	108, 780, 1331
BstBI	TTCGAA	1 cut(s)	511
BstC8I	GCNNGC	2 cut(s)	78, 606
BstDEI	CTNAG	7 cut(s)	381, 444, 548, 600, 652, 757, 1141
BstENI	CCTNNNNNAGG	1 cut(s)	574
BstF5I	GGATG	5 cut(s)	115, 450, 791, 950, 1076
BstFNI	CGCG	1 cut(s)	1408
BstKTI	GATC	7 cut(s)	27, 264, 346, 379, 538, 818, 1288
BstMAI	GTCTC	2 cut(s)	544, 836
BstMBI	GATC	7 cut(s)	24, 261, 343, 376, 535, 815, 1285
BstMWI	GCNNNNNNNGC	5 cut(s)	665, 914, 973, 979, 1058
BstNI	CCWGG	2 cut(s)	107, 335
BstNSI	RCATGY	1 cut(s)	965
BstSCI	CCNGG	3 cut(s)	105, 333, 811
BstSFI	CTRYAG	2 cut(s)	153, 915
BstSLI	GKGCMC	2 cut(s)	1205, 1303
BstUI	CGCG	1 cut(s)	1408
BstV2I	GAAGAC	3 cut(s)	150, 804, 841
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	4 cut(s)	105, 221, 608, 1405
BtsCI	GGATG	5 cut(s)	115, 450, 791, 950, 1076
BtsI	GCAGTG	1 cut(s)	1094
BtsIMutI	CAGTG	7 cut(s)	229, 532, 750, 1037, 1064, 1094, 1258
Cac8I	GCNNGC	2 cut(s)	78, 606
CaiI	CAGNNNCTG	1 cut(s)	251
CciI	TCATGA	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	607
CseI	GACGC	2 cut(s)	505, 989
Csp6I	GTAC	3 cut(s)	369, 580, 1094
CviAII	CATG	6 cut(s)	455, 533, 899, 905, 952, 962
CviQI	GTAC	3 cut(s)	369, 580, 1094
DdeI	CTNAG	7 cut(s)	381, 444, 548, 600, 652, 757, 1141
DpnI	GATC	7 cut(s)	26, 263, 345, 378, 537, 817, 1287
DpnII	GATC	7 cut(s)	24, 261, 343, 376, 535, 815, 1285
DraI	TTTAAA	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	3 cut(s)	108, 780, 1331
EarI	CTCTTC	3 cut(s)	108, 780, 1331
EciI	GGCGGA	2 cut(s)	1319, 1409
Ecl136II	GAGCTC	2 cut(s)	298, 484
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	2 cut(s)	300, 486
Eco53kI	GAGCTC	2 cut(s)	298, 484
Eco57I	CTGAAG	1 cut(s)	156
EcoICRI	GAGCTC	2 cut(s)	298, 484
EcoNI	CCTNNNNNAGG	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	105, 333
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	2 cut(s)	300, 486
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	6 cut(s)	458, 536, 902, 908, 955, 965
FatI	CATG	6 cut(s)	454, 532, 898, 904, 951, 961
FauI	CCCGC	1 cut(s)	1064
FauNDI	CATATG	1 cut(s)	987
FbaI	TGATCA	1 cut(s)	1285
FokI	GGATG	5 cut(s)	122, 437, 778, 957, 1063
FriOI	GRGCYC	2 cut(s)	300, 486
FspBI	CTAG	3 cut(s)	90, 735, 1197
GsuI	CTGGAG	1 cut(s)	1254
HaeIII	GGCC	4 cut(s)	105, 221, 608, 1405
HapII	CCGG	1 cut(s)	812
HgaI	GACGC	2 cut(s)	505, 989
Hin1II	CATG	6 cut(s)	458, 536, 902, 908, 955, 965
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	5 cut(s)	254, 755, 839, 955, 1214
HpaI	GTTAAC	1 cut(s)	210
HpaII	CCGG	1 cut(s)	812
HphI	GGTGA	2 cut(s)	281, 1378
Hpy166II	GTNNAC	5 cut(s)	210, 272, 1094, 1301, 1418
Hpy188I	TCNGA	7 cut(s)	247, 266, 384, 549, 559, 796, 1081
Hpy188III	TCNNGA	6 cut(s)	320, 431, 479, 533, 641, 1357
Hpy8I	GTNNAC	5 cut(s)	210, 272, 1094, 1301, 1418
Hpy99I	CGWCG	1 cut(s)	1299
HpyAV	CCTTC	6 cut(s)	51, 95, 483, 1097, 1235, 1357
HpyCH4III	ACNGT	7 cut(s)	368, 461, 1068, 1124, 1157, 1295, 1422
HpyCH4IV	ACGT	1 cut(s)	996
HpyF10VI	GCNNNNNNNGC	5 cut(s)	665, 914, 973, 979, 1058
HpyF3I	CTNAG	7 cut(s)	381, 444, 548, 600, 652, 757, 1141
HpySE526I	ACGT	1 cut(s)	996
Hsp92II	CATG	6 cut(s)	458, 536, 902, 908, 955, 965
KpnI	GGTACC	1 cut(s)	372
Ksp22I	TGATCA	1 cut(s)	1285
KspAI	GTTAAC	1 cut(s)	210
Kzo9I	GATC	7 cut(s)	24, 261, 343, 376, 535, 815, 1285
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	1066, 1269
LweI	GCATC	4 cut(s)	366, 375, 800, 901
MaeI	CTAG	3 cut(s)	90, 735, 1197
MaeII	ACGT	1 cut(s)	996
MaeIII	GTNAC	3 cut(s)	936, 1035, 1118
MalI	GATC	7 cut(s)	26, 263, 345, 378, 537, 817, 1287
MboI	GATC	7 cut(s)	24, 261, 343, 376, 535, 815, 1285
MboII	GAAGA	9 cut(s)	125, 155, 627, 797, 809, 841, 1250, 1348, 1372
MhlI	GDGCHC	4 cut(s)	300, 486, 1205, 1303
MluCI	AATT	7 cut(s)	323, 562, 595, 682, 694, 1192, 1325
MlyI	GAGTC	2 cut(s)	248, 749
MmeI	TCCRAC	1 cut(s)	877
MnlI	CCTC	7 cut(s)	260, 390, 720, 781, 853, 1303, 1332
MseI	TTAA	4 cut(s)	84, 209, 491, 575
MslI	CAYNNNNRTG	5 cut(s)	491, 903, 909, 943, 1134
MspI	CCGG	1 cut(s)	812
MspR9I	CCNGG	3 cut(s)	107, 335, 813
MvaI	CCWGG	2 cut(s)	107, 335
MvnI	CGCG	1 cut(s)	1408
MwoI	GCNNNNNNNGC	5 cut(s)	665, 914, 973, 979, 1058
NciI	CCSGG	1 cut(s)	813
NdeI	CATATG	1 cut(s)	987
NdeII	GATC	7 cut(s)	24, 261, 343, 376, 535, 815, 1285
NlaIII	CATG	6 cut(s)	458, 536, 902, 908, 955, 965
NlaIV	GGNNCC	5 cut(s)	75, 370, 429, 609, 1246
NmuCI	GTSAC	2 cut(s)	936, 1035
NspI	RCATGY	1 cut(s)	965
NspV	TTCGAA	1 cut(s)	511
OliI	CACNNNNGTG	1 cut(s)	1134
PagI	TCATGA	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	839, 955, 1214
PleI	GAGTC	2 cut(s)	248, 749
PpsI	GAGTC	2 cut(s)	248, 749
Psp124BI	GAGCTC	2 cut(s)	300, 486
Psp6I	CCWGG	2 cut(s)	105, 333
PspGI	CCWGG	2 cut(s)	105, 333
PspN4I	GGNNCC	5 cut(s)	75, 370, 429, 609, 1246
PspPI	GGNCC	1 cut(s)	607
PsrI	GAACNNNNNNTAC	2 cut(s)	411, 443
PstI	CTGCAG	1 cut(s)	919
PstNI	CAGNNNCTG	1 cut(s)	251
RsaI	GTAC	3 cut(s)	370, 581, 1095
RsaNI	GTAC	3 cut(s)	369, 580, 1094
RseI	CAYNNNNRTG	5 cut(s)	491, 903, 909, 943, 1134
SacI	GAGCTC	2 cut(s)	300, 486
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	84, 209, 491, 575
Sau3AI	GATC	7 cut(s)	24, 261, 343, 376, 535, 815, 1285
Sau96I	GGNCC	1 cut(s)	607
SchI	GAGTC	2 cut(s)	248, 749
ScrFI	CCNGG	3 cut(s)	107, 335, 813
SduI	GDGCHC	4 cut(s)	300, 486, 1205, 1303
SfaNI	GCATC	4 cut(s)	366, 375, 800, 901
SfcI	CTRYAG	2 cut(s)	153, 915
SfuI	TTCGAA	1 cut(s)	511
SmiMI	CAYNNNNRTG	5 cut(s)	491, 903, 909, 943, 1134
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	7 cut(s)	323, 562, 595, 682, 694, 1192, 1325
SsiI	CCGC	4 cut(s)	1071, 1330, 1394, 1406
SspMI	CTAG	3 cut(s)	90, 735, 1197
SstI	GAGCTC	2 cut(s)	300, 486
StyD4I	CCNGG	3 cut(s)	105, 333, 811
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	7 cut(s)	368, 461, 1068, 1124, 1157, 1295, 1422
TaiI	ACGT	1 cut(s)	999
TaqI	TCGA	5 cut(s)	511, 538, 642, 1356, 1429
TasI	AATT	7 cut(s)	323, 562, 595, 682, 694, 1192, 1325
TauI	GCSGC	1 cut(s)	1408
TfiI	GAWTC	3 cut(s)	839, 955, 1214
Tru1I	TTAA	4 cut(s)	84, 209, 491, 575
Tru9I	TTAA	4 cut(s)	84, 209, 491, 575
TscAI	CASTG	7 cut(s)	229, 532, 757, 1044, 1071, 1094, 1258
TseFI	GTSAC	2 cut(s)	936, 1035
Tsp45I	GTSAC	2 cut(s)	936, 1035
TspDTI	ATGAA	6 cut(s)	126, 204, 321, 798, 839, 968
TspGWI	ACGGA	1 cut(s)	1226
TspRI	CASTG	7 cut(s)	229, 532, 757, 1044, 1071, 1094, 1258
VneI	GTGCAC	1 cut(s)	1299
XagI	CCTNNNNNAGG	1 cut(s)	574
XapI	RAATTY	4 cut(s)	595, 682, 1192, 1325
XceI	RCATGY	1 cut(s)	965
XcmI	CCANNNNNNNNNTGG	1 cut(s)	725
XspI	CTAG	3 cut(s)	90, 735, 1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.