Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008778

Physical Location & Seq

Genomic Coordinates Forward (+)

22885075 .. 22889032

Gene Structure 3958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1114400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2223 bp

ATGGGGAAAGTTGGGATGAATAGCAATAGTCCTGTAACTAGAGAGCGCGTGGAATTAAATTGCCATATTCGAGATGAGAACAAGGAGATTAAGGATGGCGCTATGGGAGATGGCCGAGGGCTCTCAAAGGAGGAAGGTTTTCAGGTTAACGAGGACTTGCACAGCGTAAATGATGGGCGGCCAGAACAGCAGCTTCAAGGATGGGAGGAGTTCTTATCTGTCAGGTCTCTGAAGGTTCTGCTAGTGGAAAATGATGATGGAACTCGCAATGTTCTCCGCGCTTTACTGCAAAATTGTGGCTACGAAGTAATAGAGGCAGATAATGGTATACGAGCTTGGGAAATCTTAGAAGATCTTACAACTCATGTTGATCTTATTTTGAGTGAGGTTGTCATGCCCAGTTTGTCAGGCATGGATCTCCTGACCAACATAATGGACCACAAAACTCGAAAGAATATTCCTGTAATTATGATGTCGAGTCAAGATTCAATGAGTACAGTTATTAAGTGTTTATCAAAGGGCGCTGTTGACTTTTTATTGAAGCCTATACGAAAGAATGAGCTTAAAAACCTATGGCGGCATATCTGGAGGAAATGCCAAAGGCAATCTAGTGGTAGTGGAAGTGCAAGTGATATCGGGACTCAAAAATCTACAAAGTCGTCAAGTTTTGAGGAGTCAGACAAGAACACTGGCAGTAATTGTGAGGATAACATTGCCCTCGGAAACATTAGTCTGACTGACAAGGATGAAGGTGACAATGGAAGTGGCACTGAGACCAGTCAGGTTGATCCTTCAAGGGATGACACTTTTGGCAATGACGGGGTGCCTGCATTTAAAACTAGTGAGGGTGAAGGGCAAAATGAAGAGCTTGGTGATGTTGTCATGGGCAAAGACTCAGCTATAGGGCTTCCTAGAACTTCAGTTTTGCAGCTTGATGAACCAAAAGAAGAAGGGTTAACCAACACGACCAGCACTAATAAAGATGGACTTCCAGAAATAGACTCAAAGAACGATGATGAACAAACAGAGAAAGGGCAACCAGAGCTCAACAATGAAAAACCAAATCGGGAATTGAGAAACCAGGCTGTTGATCTAATGTGTGGCATCGGTAACAGTACCACCTTTCCTCAGATGCAATGTATTATGTTTGACGTTCCAAATGGTGTCTTCAAGCTTCCAGAGATAAAAGCTAAGGCCATCCATGACAGTAAAGAAATTCCCTCCCTTGAGCTCAGTTTAATGACGCAGAGAGATGTTCGAGATGCCAGGTGCAGTGGTCATGATCAAAATGTTCTGAGACATTCAAACAATTCAGCCTTCTCAAGGTACAAGTTTTCTACAAATTCGAAGCAGACCCCATCTGGGAATATTGGTAGCTATTCTCCTCTCGGTAATAGCTCAGGGGGAGCAAATGCAAAATCATTTCAAAATTCTCAATCTAAATCAGATGGCACTCCTCTCTACCAGCGTCCCAATGGCTGTAGTGATAACGATGACATGGGGTCCACTACAAACAAGTTCTTTGCCAACAAAGAGACATCTGAGGACAATGCAGACCCCAGATCAATCCACTCTTCCTCTGTCTTCCAACCAGACCACAGCAGGATTATGTCTTATAACCAGCTTATAGAACAAGGTCTGGCTGATGCTGCAGTCCATTACACAACTTTATTACAAGAATGGGGAATGAATCAGCACGTGCAAGTGCAGCAGCAGCACCACCACCACCATATGCATAACGTGCGTCTGGACCAGCACCAGCAGATACTGAATCACGATGGTCTGTCACTGAAAAATCTGGTGGCTGCAGCTCCACAGTGCGGGTCATCCAATGTGCAGGGTGCACCAATGGAAGGGAATATTGGCAGTAACAGTTTGCATGGGTGTGCCTTAGAAAGAAACAACAGTATCAACGGGCAGAGTGGGGGTAGCTCTGCCATAAATTCTAGAGGAACTTACATGGAATCTGATGAGTACATAGCTGGAGAAGAAGAAACTATCAGTGCAACTGAAGGTGGTAGCAAAAGTGGAGTTGATCAAAACCGTCTTGCACAAAGAGAGGCTGCTTTGCACAAATTCCGCCAGAAGAGGAAAGATAGATGCTTCGAGAAGAAGGTTAGATACCAGAGCAGGAAAAAACTGGCGGAAGAAAGGCCCCGTGTTCGTGGACAGTTTGTTCGAGAGGTGGTAAATGAAACCAAAGGCAACGATGCAGATAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

741

Amino Acids

81.7

Weight (kDa)

5.45

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	79 - 190	1.4e-23	Response regulator receiver domain
CCT	PF06203	686 - 728	5.4e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100 AT5G60100
malus_domestica	MD01G1114400.v1.1 MD07G1182300.v1.1 MD07G1182500.v1.1
pyrus_communis	pycom01g14340 pycom07g17500
rosa_chinensis	RchiOBHm_Chr1g0364431
rosa_laevigata	RLG00000027480
rosa_multiflora	Rmu_sc0001342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291850 Rroxscaffold_4G00292280
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324400 Rh1BG287100 Rh1CG303700 Rh1DG318600
rosa_wichuraiana	Rw1G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1617
AccB1I	GGYRCC	1 cut(s)	823
AccI	GTMKAC	1 cut(s)	328
AccII	CGCG	2 cut(s)	48, 279
AciI	CCGC	6 cut(s)	178, 277, 577, 1821, 2080, 2144
AclWI	GGATC	2 cut(s)	423, 782
AcoI	YGGCCR	2 cut(s)	112, 179
AcsI	RAATTY	5 cut(s)	1215, 1342, 1429, 1942, 2075
AcuI	CTGAAG	3 cut(s)	251, 903, 2031
AcvI	CACGTG	1 cut(s)	1699
AfaI	GTAC	4 cut(s)	496, 1117, 1328, 1976
AfiI	CCNNNNNNNGG	4 cut(s)	1323, 1362, 1820, 1853
AgsI	TTSAA	7 cut(s)	197, 489, 541, 795, 1171, 1305, 1427
AhdI	GACNNNNNGTC	1 cut(s)	1501
AhlI	ACTAGT	1 cut(s)	839
AjnI	CCWGG	2 cut(s)	1080, 1265
AjuI	GAANNNNNNNTTGG	2 cut(s)	1845, 1877
AloI	GAACNNNNNNTCC	2 cut(s)	2160, 2192
Alw21I	GWGCWC	3 cut(s)	1047, 1233, 1846
Alw26I	GTCTC	4 cut(s)	231, 767, 1291, 1529
Alw44I	GTGCAC	1 cut(s)	1842
AlwI	GGATC	2 cut(s)	423, 782
AlwNI	CAGNNNCTG	1 cut(s)	1768
AoxI	GGCC	4 cut(s)	112, 179, 1194, 2153
ApaLI	GTGCAC	1 cut(s)	1842
ApeKI	GCWGC	9 cut(s)	190, 928, 1649, 1708, 1711, 1714, 1805, 1808, 2063
ApoI	RAATTY	5 cut(s)	1215, 1342, 1429, 1942, 2075
ArsI	GACNNNNNNTTYG	2 cut(s)	2160, 2192
Asp700I	GAANNNNTTC	1 cut(s)	138
AspLEI	GCGC	4 cut(s)	48, 101, 281, 524
AspS9I	GGNCC	4 cut(s)	436, 1503, 1750, 2154
AsuHPI	GGTGA	3 cut(s)	764, 860, 884
AsuII	TTCGAA	1 cut(s)	1346
AvaII	GGWCC	3 cut(s)	436, 1503, 1750
BaeGI	GKGCMC	1 cut(s)	1846
BaeI	ACNNNNGTAYC	2 cut(s)	1891, 1924
BanI	GGYRCC	1 cut(s)	823
BanII	GRGCYC	3 cut(s)	123, 1047, 1233
BarI	GAAGNNNNNNTAC	2 cut(s)	2105, 2137
BbrPI	CACGTG	1 cut(s)	1699
BbsI	GAAGAC	2 cut(s)	1159, 1576
Bbv12I	GWGCWC	3 cut(s)	1047, 1233, 1846
BbvI	GCAGC	9 cut(s)	202, 940, 1636, 1720, 1723, 1726, 1792, 1820, 2050
BciT130I	CCWGG	2 cut(s)	1082, 1267
BclI	TGATCA	2 cut(s)	1282, 2035
BcoDI	GTCTC	4 cut(s)	231, 767, 1291, 1529
BcuI	ACTAGT	1 cut(s)	839
BfaI	CTAG	6 cut(s)	39, 242, 609, 840, 912, 1947
BfmI	CTRYAG	4 cut(s)	900, 1480, 1650, 1806
BfoI	RGCGCY	2 cut(s)	102, 525
BglII	AGATCT	1 cut(s)	352
Bme1390I	CCNGG	2 cut(s)	1082, 1267
Bme18I	GGWCC	3 cut(s)	436, 1503, 1750
BmeRI	GACNNNNNGTC	1 cut(s)	1501
BmgT120I	GGNCC	4 cut(s)	436, 1503, 1750, 2154
BmiI	GGNNCC	3 cut(s)	825, 1504, 2156
BmrFI	CCNGG	2 cut(s)	1082, 1267
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	6 cut(s)	1113, 1122, 1252, 1636, 2090, 2200
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	2 cut(s)	1159, 1576
BpmI	CTGGAG	2 cut(s)	607, 2004
Bpu10I	CCTNAGC	2 cut(s)	1191, 1399
Bpu14I	TTCGAA	1 cut(s)	1346
BpuEI	CTTGAG	2 cut(s)	1247, 1306
BsaAI	YACGTR	1 cut(s)	1699
BsaI	GGTCTC	2 cut(s)	231, 767
BsaJI	CCNNGG	2 cut(s)	115, 718
Bsc4I	CCNNNNNNNGG	4 cut(s)	1323, 1362, 1820, 1853
Bse1I	ACTGG	4 cut(s)	399, 694, 777, 2145
Bse3DI	GCAATG	4 cut(s)	274, 711, 820, 1142
BseBI	CCWGG	2 cut(s)	1082, 1267
BseDI	CCNNGG	2 cut(s)	115, 718
BseGI	GGATG	7 cut(s)	21, 100, 206, 751, 805, 1197, 1826
BseLI	CCNNNNNNNGG	4 cut(s)	1323, 1362, 1820, 1853
BseMI	GCAATG	4 cut(s)	274, 711, 820, 1142
BseMII	CTCAG	7 cut(s)	762, 909, 1142, 1246, 1286, 1413, 1533
BseNI	ACTGG	4 cut(s)	399, 694, 777, 2145
BseRI	GAGGAG	4 cut(s)	221, 686, 1374, 1446
BseSI	GKGCMC	1 cut(s)	1846
BseXI	GCAGC	9 cut(s)	202, 940, 1636, 1720, 1723, 1726, 1792, 1820, 2050
BsgI	GTGCAG	3 cut(s)	1291, 1727, 1856
Bsh1236I	CGCG	2 cut(s)	48, 279
BshFI	GGCC	4 cut(s)	114, 181, 1196, 2155
BshNI	GGYRCC	1 cut(s)	823
BsiHKAI	GWGCWC	3 cut(s)	1047, 1233, 1846
BslFI	GGGAC	2 cut(s)	652, 1455
BslI	CCNNNNNNNGG	4 cut(s)	1323, 1362, 1820, 1853
BsmAI	GTCTC	4 cut(s)	231, 767, 1291, 1529
BsmFI	GGGAC	2 cut(s)	652, 1455
BsnI	GGCC	4 cut(s)	114, 181, 1196, 2155
Bso31I	GGTCTC	2 cut(s)	231, 767
Bsp119I	TTCGAA	1 cut(s)	1346
Bsp1286I	GDGCHC	4 cut(s)	123, 1047, 1233, 1846
Bsp143I	GATC	8 cut(s)	352, 370, 415, 787, 1090, 1282, 1562, 2035
BspACI	CCGC	6 cut(s)	178, 277, 577, 1821, 2080, 2144
BspANI	GGCC	4 cut(s)	114, 181, 1196, 2155
BspCNI	CTCAG	7 cut(s)	763, 908, 1141, 1245, 1287, 1412, 1534
BspFNI	CGCG	2 cut(s)	48, 279
BspHI	TCATGA	1 cut(s)	1279
BspLI	GGNNCC	3 cut(s)	825, 1504, 2156
BspMAI	CTGCAG	2 cut(s)	1654, 1810
BspPI	GGATC	2 cut(s)	423, 782
BspQI	GCTCTTC	1 cut(s)	858
BspT104I	TTCGAA	1 cut(s)	1346
BspT107I	GGYRCC	1 cut(s)	823
BspTNI	GGTCTC	2 cut(s)	231, 767
BsrDI	GCAATG	4 cut(s)	274, 711, 820, 1142
BsrI	ACTGG	4 cut(s)	399, 694, 777, 2145
BssECI	CCNNGG	2 cut(s)	115, 718
BssMI	GATC	8 cut(s)	352, 370, 415, 787, 1090, 1282, 1562, 2035
BssNAI	GTATAC	1 cut(s)	329
Bst1107I	GTATAC	1 cut(s)	329
Bst2UI	CCWGG	2 cut(s)	1082, 1267
Bst4CI	ACNGT	8 cut(s)	499, 1115, 1208, 1818, 1874, 1907, 2045, 2172
Bst6I	CTCTTC	3 cut(s)	858, 1579, 2081
BstAPI	GCANNNNNTGC	1 cut(s)	1741
BstBAI	YACGTR	1 cut(s)	1699
BstBI	TTCGAA	1 cut(s)	1346
BstC8I	GCNNGC	1 cut(s)	828
BstENI	CCTNNNNNAGG	1 cut(s)	1321
BstF5I	GGATG	7 cut(s)	21, 100, 206, 751, 805, 1197, 1826
BstFNI	CGCG	2 cut(s)	48, 279
BstH2I	RGCGCY	2 cut(s)	102, 525
BstHHI	GCGC	4 cut(s)	48, 101, 281, 524
BstKTI	GATC	8 cut(s)	355, 373, 418, 790, 1093, 1285, 1565, 2038
BstMAI	GTCTC	4 cut(s)	231, 767, 1291, 1529
BstMBI	GATC	8 cut(s)	352, 370, 415, 787, 1090, 1282, 1562, 2035
BstMWI	GCNNNNNNNGC	6 cut(s)	187, 1042, 1649, 1708, 1714, 1741
BstNI	CCWGG	2 cut(s)	1082, 1267
BstSCI	CCNGG	2 cut(s)	1080, 1265
BstSFI	CTRYAG	4 cut(s)	900, 1480, 1650, 1806
BstSLI	GKGCMC	1 cut(s)	1846
BstUI	CGCG	2 cut(s)	48, 279
BstV1I	GCAGC	9 cut(s)	202, 940, 1636, 1720, 1723, 1726, 1792, 1820, 2050
BstV2I	GAAGAC	2 cut(s)	1159, 1576
BstX2I	RGATCY	2 cut(s)	352, 415
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	2 cut(s)	352, 415
BstZ17I	GTATAC	1 cut(s)	329
BsuRI	GGCC	4 cut(s)	114, 181, 1196, 2155
BtsCI	GGATG	7 cut(s)	21, 100, 206, 751, 805, 1197, 1826
BtsI	GCAGTG	1 cut(s)	1279
BtsIMutI	CAGTG	6 cut(s)	687, 768, 1279, 1787, 1823, 2008
Cac8I	GCNNGC	1 cut(s)	828
CaiI	CAGNNNCTG	1 cut(s)	1768
CciI	TCATGA	1 cut(s)	1279
CfoI	GCGC	4 cut(s)	48, 101, 281, 524
Cfr13I	GGNCC	4 cut(s)	436, 1503, 1750, 2154
CseI	GACGC	3 cut(s)	1252, 1457, 1733
Csp6I	GTAC	4 cut(s)	495, 1116, 1327, 1975
CspCI	CAANNNNNGTGG	2 cut(s)	745, 780
CviAII	CATG	9 cut(s)	365, 394, 412, 883, 1202, 1280, 1498, 1880, 1960
CviQI	GTAC	4 cut(s)	495, 1116, 1327, 1975
DpnI	GATC	8 cut(s)	354, 372, 417, 789, 1092, 1284, 1564, 2037
DpnII	GATC	8 cut(s)	352, 370, 415, 787, 1090, 1282, 1562, 2035
DraI	TTTAAA	1 cut(s)	835
DriI	GACNNNNNGTC	1 cut(s)	1501
EaeI	YGGCCR	2 cut(s)	112, 179
Eam1104I	CTCTTC	3 cut(s)	858, 1579, 2081
Eam1105I	GACNNNNNGTC	1 cut(s)	1501
EarI	CTCTTC	3 cut(s)	858, 1579, 2081
EciI	GGCGGA	2 cut(s)	2069, 2159
Ecl136II	GAGCTC	2 cut(s)	1045, 1231
Eco24I	GRGCYC	3 cut(s)	123, 1047, 1233
Eco31I	GGTCTC	2 cut(s)	231, 767
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	3 cut(s)	436, 1503, 1750
Eco53kI	GAGCTC	2 cut(s)	1045, 1231
Eco57I	CTGAAG	3 cut(s)	251, 903, 2031
Eco72I	CACGTG	1 cut(s)	1699
EcoICRI	GAGCTC	2 cut(s)	1045, 1231
EcoNI	CCTNNNNNAGG	1 cut(s)	1321
EcoO109I	RGGNCCY	1 cut(s)	2154
EcoRII	CCWGG	2 cut(s)	1080, 1265
EcoRV	GATATC	1 cut(s)	634
EcoT22I	ATGCAT	1 cut(s)	1737
EcoT38I	GRGCYC	3 cut(s)	123, 1047, 1233
FaeI	CATG	9 cut(s)	368, 397, 415, 886, 1205, 1283, 1501, 1883, 1963
FalI	AAGNNNNNCTT	2 cut(s)	972, 1004
FaqI	GGGAC	2 cut(s)	652, 1455
FatI	CATG	9 cut(s)	364, 393, 411, 882, 1201, 1279, 1497, 1879, 1959
FauI	CCCGC	1 cut(s)	1814
FauNDI	CATATG	1 cut(s)	1731
FbaI	TGATCA	2 cut(s)	1282, 2035
FblI	GTMKAC	1 cut(s)	328
FokI	GGATG	7 cut(s)	28, 107, 213, 758, 812, 1184, 1813
FriOI	GRGCYC	3 cut(s)	123, 1047, 1233
FspBI	CTAG	6 cut(s)	39, 242, 609, 840, 912, 1947
GlaI	GCGC	4 cut(s)	47, 100, 280, 523
GsuI	CTGGAG	2 cut(s)	607, 2004
HaeII	RGCGCY	2 cut(s)	102, 525
HaeIII	GGCC	4 cut(s)	114, 181, 1196, 2155
HgaI	GACGC	3 cut(s)	1252, 1457, 1733
HhaI	GCGC	4 cut(s)	48, 101, 281, 524
Hin1II	CATG	9 cut(s)	368, 397, 415, 886, 1205, 1283, 1501, 1883, 1963
Hin6I	GCGC	4 cut(s)	46, 99, 279, 522
HinP1I	GCGC	4 cut(s)	46, 99, 279, 522
HincII	GTYRAC	3 cut(s)	148, 529, 957
HindII	GTYRAC	3 cut(s)	148, 529, 957
HindIII	AAGCTT	1 cut(s)	1172
HinfI	GANTC	9 cut(s)	478, 485, 640, 674, 893, 1001, 1690, 1771, 1964
HpaI	GTTAAC	2 cut(s)	148, 957
HphI	GGTGA	3 cut(s)	764, 860, 884
Hpy166II	GTNNAC	7 cut(s)	148, 329, 529, 957, 1506, 1844, 2168
Hpy188I	TCNGA	9 cut(s)	231, 679, 722, 735, 1131, 1296, 1447, 1543, 1969
Hpy8I	GTNNAC	7 cut(s)	148, 329, 529, 957, 1506, 1844, 2168
HpyCH4III	ACNGT	8 cut(s)	499, 1115, 1208, 1818, 1874, 1907, 2045, 2172
HpyCH4IV	ACGT	3 cut(s)	1152, 1698, 1740
HpyF10VI	GCNNNNNNNGC	6 cut(s)	187, 1042, 1649, 1708, 1714, 1741
HpySE526I	ACGT	3 cut(s)	1152, 1698, 1740
Hsp92II	CATG	9 cut(s)	368, 397, 415, 886, 1205, 1283, 1501, 1883, 1963
HspAI	GCGC	4 cut(s)	46, 99, 279, 522
Ksp22I	TGATCA	2 cut(s)	1282, 2035
KspAI	GTTAAC	2 cut(s)	148, 957
Kzo9I	GATC	8 cut(s)	352, 370, 415, 787, 1090, 1282, 1562, 2035
LguI	GCTCTTC	1 cut(s)	858
LmnI	GCTCC	2 cut(s)	1406, 1816
Lsp1109I	GCAGC	9 cut(s)	202, 940, 1636, 1720, 1723, 1726, 1792, 1820, 2050
LweI	GCATC	6 cut(s)	1113, 1122, 1252, 1636, 2090, 2200
MaeI	CTAG	6 cut(s)	39, 242, 609, 840, 912, 1947
MaeII	ACGT	3 cut(s)	1152, 1698, 1740
MaeIII	GTNAC	5 cut(s)	34, 752, 1109, 1785, 1868
MalI	GATC	8 cut(s)	354, 372, 417, 789, 1092, 1284, 1564, 2037
MboI	GATC	8 cut(s)	352, 370, 415, 787, 1090, 1282, 1562, 2035
MflI	RGATCY	2 cut(s)	352, 415
MhlI	GDGCHC	4 cut(s)	123, 1047, 1233, 1846
MlyI	GAGTC	5 cut(s)	487, 634, 683, 887, 995
MmeI	TCCRAC	1 cut(s)	1612
Mph1103I	ATGCAT	1 cut(s)	1737
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	8 cut(s)	56, 90, 147, 504, 564, 834, 956, 1238
MslI	CAYNNNNRTG	1 cut(s)	1884
MspR9I	CCNGG	2 cut(s)	1082, 1267
MvaI	CCWGG	2 cut(s)	1082, 1267
MvnI	CGCG	2 cut(s)	48, 279
MwoI	GCNNNNNNNGC	6 cut(s)	187, 1042, 1649, 1708, 1714, 1741
NdeI	CATATG	1 cut(s)	1731
NdeII	GATC	8 cut(s)	352, 370, 415, 787, 1090, 1282, 1562, 2035
NlaIII	CATG	9 cut(s)	368, 397, 415, 886, 1205, 1283, 1501, 1883, 1963
NlaIV	GGNNCC	3 cut(s)	825, 1504, 2156
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	2 cut(s)	752, 1785
NsiI	ATGCAT	1 cut(s)	1737
NspV	TTCGAA	1 cut(s)	1346
PagI	TCATGA	1 cut(s)	1279
PciSI	GCTCTTC	1 cut(s)	858
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	4 cut(s)	485, 1690, 1771, 1964
PleI	GAGTC	5 cut(s)	486, 634, 682, 887, 995
PmaCI	CACGTG	1 cut(s)	1699
PmlI	CACGTG	1 cut(s)	1699
PpsI	GAGTC	5 cut(s)	486, 634, 682, 887, 995
Ppu21I	YACGTR	1 cut(s)	1699
PsiI	TTATAA	1 cut(s)	1617
Psp124BI	GAGCTC	2 cut(s)	1047, 1233
Psp6I	CCWGG	2 cut(s)	1080, 1265
PspCI	CACGTG	1 cut(s)	1699
PspGI	CCWGG	2 cut(s)	1080, 1265
PspN4I	GGNNCC	3 cut(s)	825, 1504, 2156
PspPI	GGNCC	4 cut(s)	436, 1503, 1750, 2154
PstI	CTGCAG	2 cut(s)	1654, 1810
PstNI	CAGNNNCTG	1 cut(s)	1768
PsuI	RGATCY	2 cut(s)	352, 415
RsaI	GTAC	4 cut(s)	496, 1117, 1328, 1976
RsaNI	GTAC	4 cut(s)	495, 1116, 1327, 1975
RseI	CAYNNNNRTG	1 cut(s)	1884
SacI	GAGCTC	2 cut(s)	1047, 1233
SapI	GCTCTTC	1 cut(s)	858
SaqAI	TTAA	8 cut(s)	56, 90, 147, 504, 564, 834, 956, 1238
Sau3AI	GATC	8 cut(s)	352, 370, 415, 787, 1090, 1282, 1562, 2035
Sau96I	GGNCC	4 cut(s)	436, 1503, 1750, 2154
SchI	GAGTC	5 cut(s)	487, 634, 683, 887, 995
ScrFI	CCNGG	2 cut(s)	1082, 1267
SduI	GDGCHC	4 cut(s)	123, 1047, 1233, 1846
SfaNI	GCATC	6 cut(s)	1113, 1122, 1252, 1636, 2090, 2200
SfcI	CTRYAG	4 cut(s)	900, 1480, 1650, 1806
SfuI	TTCGAA	1 cut(s)	1346
SinI	GGWCC	3 cut(s)	436, 1503, 1750
SmiMI	CAYNNNNRTG	1 cut(s)	1884
SmlI	CTYRAG	2 cut(s)	1226, 1321
SmoI	CTYRAG	2 cut(s)	1226, 1321
SpeI	ACTAGT	1 cut(s)	839
SsiI	CCGC	6 cut(s)	178, 277, 577, 1821, 2080, 2144
SspI	AATATT	3 cut(s)	457, 1369, 1861
SspMI	CTAG	6 cut(s)	39, 242, 609, 840, 912, 1947
SstI	GAGCTC	2 cut(s)	1047, 1233
StyD4I	CCNGG	2 cut(s)	1080, 1265
TaaI	ACNGT	8 cut(s)	499, 1115, 1208, 1818, 1874, 1907, 2045, 2172
TaiI	ACGT	3 cut(s)	1155, 1701, 1743
TaqI	TCGA	7 cut(s)	70, 448, 476, 1258, 1346, 2106, 2179
TatI	WGTACW	2 cut(s)	494, 1974
TauI	GCSGC	2 cut(s)	181, 580
TfiI	GAWTC	4 cut(s)	485, 1690, 1771, 1964
Tru1I	TTAA	8 cut(s)	56, 90, 147, 504, 564, 834, 956, 1238
Tru9I	TTAA	8 cut(s)	56, 90, 147, 504, 564, 834, 956, 1238
TscAI	CASTG	6 cut(s)	694, 775, 1279, 1794, 1823, 2008
TseFI	GTSAC	2 cut(s)	752, 1785
TseI	GCWGC	9 cut(s)	190, 928, 1649, 1708, 1711, 1714, 1805, 1808, 2063
Tsp45I	GTSAC	2 cut(s)	752, 1785
TspDTI	ATGAA	8 cut(s)	32, 762, 876, 951, 1032, 1068, 1703, 2208
TspRI	CASTG	6 cut(s)	694, 775, 1279, 1794, 1823, 2008
VneI	GTGCAC	1 cut(s)	1842
VpaK11BI	GGWCC	3 cut(s)	436, 1503, 1750
XagI	CCTNNNNNAGG	1 cut(s)	1321
XapI	RAATTY	5 cut(s)	1215, 1342, 1429, 1942, 2075
XbaI	TCTAGA	1 cut(s)	1946
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1472
XmiI	GTMKAC	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	6 cut(s)	39, 242, 609, 840, 912, 1947
Zsp2I	ATGCAT	1 cut(s)	1737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.