AT5G62020

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013887
Physical Location & Seq
Forward (+)
24915807 .. 24917643
1837 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62020.1

Sequence Viewer

Length: 900 bp
ATGAATTCGCCGCCGGTTGACGCAATGATTACCGGAGAATCATCGTCACAAAGATCTATCCCAACGCCGTTTCTCACAAAAACGTTTAACCTCGTTGAAGATAGTTCCATCGACGATGTTATCTCATGGAACGAAGATGGTTCCTCTTTCATCGTATGGAATCCGACAGATTTCGCTAAAGATTTGCTTCCTAAACACTTCAAACACAACAATTTCTCTAGTTTCGTTCGTCAGCTCAACACTTACGGATTCAAAAAAGTTGTACCGGATCGATGGGAGTTTTCAAACGATTTCTTTAAGAGAGGAGAAAAACGTCTTCTCCGTGAGATCCAACGTCGGAAAATAACAACGACGCATCAAACAGTTGTTGCTCCTTCGTCGGAACAACGAAACCAGACGATGGTTGTATCACCGTCAAATTCCGGGGAAGATAATAATAATAATCAGGTGATGTCTTCGTCTCCGTCGTCGTGGTATTGTCATCAAACGAAGACGACTGGGAATGGTGGTTTATCAGTGGAGTTATTGGAAGAGAACGAGAAGCTTCGGAGTCAAAACATTCAGCTAAACCGTGAGCTTACTCAGATGAAATCTATCTGCGATAATATCTATAGTCTCATGTCGAATTACGTCGGATCTCAGCCCACTGATCGGAGTTATTCTCCCGGAGGTAGTAGTAGTCAACCGATGGAGTTTTTACCGGCGAAGCGGTTTTCGGAGATGGAGATTGAAGAAGAAGAAGAAGCGAGTCCGAGGTTGTTTGGTGTTCCGATTGGGTTAAAACGGACGAGAAGTGAAGGTGTTCAGGTGAAGACGACGGCGGTGGTTGGGGAAAATTCCGATGAGGAGACGCCGTGGTTGAGACATTATAATCGAACCAATCAGAGAGTTTGTAATTAA

Protein Analysis

299

Amino Acids

34.05

Weight (kDa)

5.84

Isoelectric Point (pI)

68.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 24 - 113 8.1e-31 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62020
fragaria_vesca FvH4_7g29190
malus_domestica MD01G1198700.v1.1 MD07G1266500.v1.1
prunus_persica Prupe.2G292100_v2.0.a1
pyrus_communis pycom01g20880 pycom07g24430
rosa_chinensis RchiOBHm_Chr1g0376961
rosa_laevigata RLG00000026556
rosa_multiflora Rmu_ssc0000155.1_g000034
rosa_roxburghii Rroxscaffold_4G00281590
rosa_rugosa Rorug01G0399900
rosa_samantha Rh1AG417100 Rh1BG376500 Rh1CG390300 Rh1DG407200
rosa_wichuraiana Rw1G036610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 870
AccB7I CCANNNNNTGG 1 cut(s) 400
AciI CCGC 3 cut(s) 11, 709, 821
AclI AACGTT 1 cut(s) 83
AclWI GGATC 3 cut(s) 276, 322, 643
AcsI RAATTY 3 cut(s) 4, 418, 835
AcyI GRCGYC 1 cut(s) 851
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 2 cut(s) 400, 651
AgsI TTSAA 5 cut(s) 98, 202, 253, 285, 731
AluBI AGCT 4 cut(s) 235, 544, 565, 577
AluI AGCT 4 cut(s) 235, 544, 565, 577
Alw26I GTCTC 4 cut(s) 465, 620, 842, 856
AlwI GGATC 3 cut(s) 276, 322, 643
ApoI RAATTY 3 cut(s) 4, 418, 835
Asp700I GAANNNNTTC 1 cut(s) 801
AsuC2I CCSGG 2 cut(s) 424, 666
AsuHPI GGTGA 3 cut(s) 402, 460, 820
BbsI GAAGAC 4 cut(s) 308, 447, 497, 818
BccI CCATC 6 cut(s) 116, 131, 267, 394, 682, 715
BceAI ACGGC 3 cut(s) 52, 834, 838
BcnI CCSGG 2 cut(s) 424, 666
BcoDI GTCTC 4 cut(s) 465, 620, 842, 856
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 610
BglII AGATCT 1 cut(s) 53
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 2 cut(s) 424, 666
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 2 cut(s) 424, 666
BmrI ACTGGG 1 cut(s) 507
BmsI GCATC 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 507
BpiI GAAGAC 4 cut(s) 308, 447, 497, 818
BplI GAGNNNNNCTC 2 cut(s) 646, 678
BpuMI CCSGG 2 cut(s) 424, 666
Bsa29I ATCGAT 1 cut(s) 271
BsaHI GRCGYC 1 cut(s) 851
BsaJI CCNNGG 3 cut(s) 423, 752, 854
BsaWI WCCGGW 2 cut(s) 32, 265
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 839, 869
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 651
Bse118I RCCGGY 2 cut(s) 13, 700
Bse1I ACTGG 1 cut(s) 502
Bse3DI GCAATG 1 cut(s) 30
BseCI ATCGAT 1 cut(s) 271
BseDI CCNNGG 3 cut(s) 423, 752, 854
BseLI CCNNNNNNNGG 2 cut(s) 400, 651
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 596, 653
BseNI ACTGG 1 cut(s) 502
BseRI GAGGAG 2 cut(s) 318, 860
BshVI ATCGAT 1 cut(s) 271
BsiSI CCGG 6 cut(s) 14, 33, 266, 423, 666, 701
BslI CCNNNNNNNGG 2 cut(s) 400, 651
BsmAI GTCTC 4 cut(s) 465, 620, 842, 856
BsmBI CGTCTC 2 cut(s) 465, 842
Bsp143I GATC 5 cut(s) 53, 268, 327, 635, 649
BspACI CCGC 3 cut(s) 11, 709, 821
BspCNI CTCAG 2 cut(s) 595, 652
BspDI ATCGAT 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 142
BspPI GGATC 3 cut(s) 276, 322, 643
BsrDI GCAATG 1 cut(s) 30
BsrFI RCCGGY 2 cut(s) 13, 700
BsrI ACTGG 1 cut(s) 502
BssAI RCCGGY 2 cut(s) 13, 700
BssECI CCNNGG 3 cut(s) 423, 752, 854
BssMI GATC 5 cut(s) 53, 268, 327, 635, 649
BssNI GRCGYC 1 cut(s) 851
Bst4CI ACNGT 3 cut(s) 364, 414, 572
Bst6I CTCTTC 1 cut(s) 525
BstACI GRCGYC 1 cut(s) 851
BstDEI CTNAG 2 cut(s) 582, 639
BstDSI CCRYGG 1 cut(s) 854
BstKTI GATC 5 cut(s) 56, 271, 330, 638, 652
BstMAI GTCTC 4 cut(s) 465, 620, 842, 856
BstMBI GATC 5 cut(s) 53, 268, 327, 635, 649
BstSCI CCNGG 2 cut(s) 422, 664
BstSFI CTRYAG 1 cut(s) 610
BstV2I GAAGAC 4 cut(s) 308, 447, 497, 818
BstX2I RGATCY 3 cut(s) 53, 327, 635
BstYI RGATCY 3 cut(s) 53, 327, 635
Bsu15I ATCGAT 1 cut(s) 271
BsuTUI ATCGAT 1 cut(s) 271
BtgI CCRYGG 1 cut(s) 854
BtsIMutI CAGTG 2 cut(s) 522, 645
Cfr10I RCCGGY 2 cut(s) 13, 700
ClaI ATCGAT 1 cut(s) 271
CseI GACGC 3 cut(s) 29, 361, 859
Csp6I GTAC 1 cut(s) 263
CviAII CATG 2 cut(s) 126, 619
CviJI RGCY 5 cut(s) 235, 544, 565, 577, 643
CviKI_1 RGCY 5 cut(s) 235, 544, 565, 577, 643
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 2 cut(s) 582, 639
DpnI GATC 5 cut(s) 55, 270, 329, 637, 651
DpnII GATC 5 cut(s) 53, 268, 327, 635, 649
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 4
Esp3I CGTCTC 2 cut(s) 465, 842
FaeI CATG 2 cut(s) 129, 622
FaiI YATR 5 cut(s) 127, 157, 612, 620, 870
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FatI CATG 2 cut(s) 125, 618
Fnu4HI GCNGC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 1 cut(s) 219
GluI GCNGC 1 cut(s) 11
HapII CCGG 6 cut(s) 14, 33, 266, 423, 666, 701
HgaI GACGC 3 cut(s) 29, 361, 859
Hin1I GRCGYC 1 cut(s) 851
Hin1II CATG 2 cut(s) 129, 622
HincII GTYRAC 2 cut(s) 19, 683
HindII GTYRAC 2 cut(s) 19, 683
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 5 cut(s) 38, 160, 249, 550, 748
HpaII CCGG 6 cut(s) 14, 33, 266, 423, 666, 701
HphI GGTGA 3 cut(s) 402, 460, 820
Hpy166II GTNNAC 2 cut(s) 19, 683
Hpy8I GTNNAC 2 cut(s) 19, 683
Hpy99I CGWCG 8 cut(s) 116, 339, 355, 382, 469, 472, 635, 820
HpyAV CCTTC 2 cut(s) 384, 791
HpyCH4III ACNGT 3 cut(s) 364, 414, 572
HpyCH4IV ACGT 4 cut(s) 83, 313, 334, 630
HpyF3I CTNAG 2 cut(s) 582, 639
HpySE526I ACGT 4 cut(s) 83, 313, 334, 630
Hsp92I GRCGYC 1 cut(s) 851
Hsp92II CATG 2 cut(s) 129, 622
Kzo9I GATC 5 cut(s) 53, 268, 327, 635, 649
LmnI GCTCC 1 cut(s) 376
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 219
MaeII ACGT 4 cut(s) 83, 313, 334, 630
MaeIII GTNAC 1 cut(s) 45
MalI GATC 5 cut(s) 55, 270, 329, 637, 651
MboI GATC 5 cut(s) 53, 268, 327, 635, 649
MflI RGATCY 3 cut(s) 53, 327, 635
MluCI AATT 6 cut(s) 4, 211, 418, 625, 835, 895
MlyI GAGTC 2 cut(s) 559, 757
MmeI TCCRAC 5 cut(s) 188, 317, 355, 360, 613
MnlI CCTC 6 cut(s) 101, 154, 296, 662, 747, 838
MroXI GAANNNNTTC 1 cut(s) 801
MseI TTAA 4 cut(s) 87, 297, 779, 898
MspI CCGG 6 cut(s) 14, 33, 266, 423, 666, 701
MspR9I CCNGG 2 cut(s) 424, 666
NciI CCSGG 2 cut(s) 424, 666
NdeII GATC 5 cut(s) 53, 268, 327, 635, 649
NlaIII CATG 2 cut(s) 129, 622
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 45
PcsI WCGNNNNNNNCGW 2 cut(s) 319, 464
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 3 cut(s) 38, 160, 249
PflMI CCANNNNNTGG 1 cut(s) 400
PfoI TCCNGGA 1 cut(s) 664
PkrI GCNGC 1 cut(s) 12
PleI GAGTC 2 cut(s) 558, 756
PpsI GAGTC 2 cut(s) 558, 756
PsiI TTATAA 1 cut(s) 870
Psp1406I AACGTT 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 142
PsuI RGATCY 3 cut(s) 53, 327, 635
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SaqAI TTAA 4 cut(s) 87, 297, 779, 898
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 5 cut(s) 53, 268, 327, 635, 649
SchI GAGTC 2 cut(s) 559, 757
ScrFI CCNGG 2 cut(s) 424, 666
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 610
Sse9I AATT 6 cut(s) 4, 211, 418, 625, 835, 895
SsiI CCGC 3 cut(s) 11, 709, 821
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 422, 664
TaaI ACNGT 3 cut(s) 364, 414, 572
TaiI ACGT 4 cut(s) 86, 316, 337, 633
TaqI TCGA 4 cut(s) 111, 271, 623, 874
TasI AATT 6 cut(s) 4, 211, 418, 625, 835, 895
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 3 cut(s) 38, 160, 249
Tru1I TTAA 4 cut(s) 87, 297, 779, 898
Tru9I TTAA 4 cut(s) 87, 297, 779, 898
TscAI CASTG 2 cut(s) 522, 652
TseFI GTSAC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 3 cut(s) 17, 139, 602
TspGWI ACGGA 4 cut(s) 261, 311, 453, 799
TspRI CASTG 2 cut(s) 522, 652
Van91I CCANNNNNTGG 1 cut(s) 400
XapI RAATTY 3 cut(s) 4, 418, 835
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.