Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013887

Physical Location & Seq

Genomic Coordinates Forward (+)

3820986 .. 3826123

Gene Structure 5138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCTCCCCCTCCGCCTACGGTGGAGCAGAACGGCGAGTCCACCTCCGGCGAGTCGACGCAGCGAGGCTCTCCGACGCCGTTTCTGAGCAAAACGTACCAGCTCGTCGACGATCCCGCCATCGATGACGTCATCGCCTGGAGCGGCGACGGATCCAGCTTCGTGGTGAAGAACCCCACCGTGTTCGCCAGAGATTTGCTGCCCAAGTTTTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAACACCTACGGATTTCGGAAGATTATACCTGACCGGTGGGAATTCTCCAACGACTGCTTCCGCAGAGGCGAGAAGCGGCTGCTCTGCGACATACAGCGGCGGAGAATTACGCCTCCGGCGGTTGCTCCGGCCGTGATTCCGGCGAAACCTATCACCTCTCCGGCGAACTCCGGCGAGGAGCAGGTGACTACTTCGTCGAGCTCCTCGCCGCGGCCGAGGATTCCGTGGCAGCTGGTGGAGGAGAACGAGAGGCTGAGGAAGGAGAACCTCCGGCTGACCAAGGAGCTGGCGGAGATCAAGTCTCTCTGCCACAACATCTTCTCCATGGTGTCGAATTACGCCTGTAATAAGCCACCGGAGGGCGGTTTAGGTGAGTTGACGCAGCTGAGTTTGATGCCCGGGGAGCGGTTTTCCGGCAGGGAGACGAGTCCGAAGATTTTCGGGGTGGAAATCGGAGCGAAGCGGGCGAGGGAGCAAGGCGGTGTAGGTGATGAGGAGACGGATCTACGGCTGCGGCAACCGAGCGGTGGTGGCGGTGTGAAATCAGAGCCGTCGGATGTGGAGCATCGTGAGAAGCCGTGGCTGAAGCAGTGCCACAGGGCTAATCAGAGGGTGTGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

290

Amino Acids

32.36

Weight (kDa)

8.89

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	28 - 117	1.2e-29	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62020
fragaria_vesca	FvH4_7g29190
malus_domestica	MD01G1198700.v1.1 MD07G1266500.v1.1
prunus_persica	Prupe.2G292100_v2.0.a1
pyrus_communis	pycom01g20880 pycom07g24430
rosa_chinensis	RchiOBHm_Chr1g0376961
rosa_laevigata	RLG00000026556
rosa_multiflora	Rmu_ssc0000155.1_g000034
rosa_roxburghii	Rroxscaffold_4G00281590
rosa_rugosa	Rorug01G0399900
rosa_samantha	Rh1AG417100 Rh1BG376500 Rh1CG390300 Rh1DG407200
rosa_wichuraiana	Rw1G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	421
AasI	GACNNNNNNGTC	1 cut(s)	442
AatII	GACGTC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	421
AccBSI	CCGCTC	3 cut(s)	144, 655, 774
AccI	GTMKAC	2 cut(s)	56, 108
AccII	CGCG	1 cut(s)	460
AclWI	GGATC	4 cut(s)	107, 147, 160, 759
AcoI	YGGCCR	2 cut(s)	378, 461
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	854
AcyI	GRCGYC	2 cut(s)	77, 129
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	5 cut(s)	459, 608, 611, 654, 776
AgeI	ACCGGT	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	8 cut(s)	103, 159, 234, 247, 450, 481, 535, 634
AluI	AGCT	8 cut(s)	103, 159, 234, 247, 450, 481, 535, 634
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	3 cut(s)	555, 665, 740
AlwI	GGATC	4 cut(s)	107, 147, 160, 759
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	2 cut(s)	378, 461
ApeKI	GCWGC	7 cut(s)	61, 199, 244, 328, 478, 631, 760
ApoI	RAATTY	1 cut(s)	290
AsiGI	ACCGGT	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	686
AsuC2I	CCSGG	2 cut(s)	648, 649
AsuHPI	GGTGA	5 cut(s)	178, 394, 445, 632, 749
AvaI	CYCGRG	1 cut(s)	647
BamHI	GGATCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	452
BbvCI	CCTCAGC	1 cut(s)	503
BbvI	GCAGC	7 cut(s)	73, 186, 256, 315, 490, 643, 747
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	6 cut(s)	49, 64, 365, 773, 784, 811
BciT130I	CCWGG	1 cut(s)	139
BcnI	CCSGG	2 cut(s)	648, 649
BcoDI	GTCTC	3 cut(s)	555, 665, 740
BfuAI	ACCTGC	1 cut(s)	421
Bme1390I	CCNGG	3 cut(s)	139, 648, 649
BmeT110I	CYCGRG	1 cut(s)	647
BmiI	GGNNCC	2 cut(s)	6, 154
BmrFI	CCNGG	3 cut(s)	139, 648, 649
BmsI	GCATC	2 cut(s)	633, 823
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	2 cut(s)	160, 214
Bpu10I	CCTNAGC	1 cut(s)	503
BpuMI	CCSGG	2 cut(s)	648, 649
Bsa29I	ATCGAT	1 cut(s)	123
BsaHI	GRCGYC	2 cut(s)	77, 129
BsaJI	CCNNGG	8 cut(s)	458, 464, 473, 528, 573, 647, 648, 827
BsaWI	WCCGGW	2 cut(s)	282, 604
BsaXI	ACNNNNNCTCC	6 cut(s)	212, 242, 533, 554, 563, 584
Bsc4I	CCNNNNNNNGG	5 cut(s)	459, 608, 611, 654, 776
Bse118I	RCCGGY	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	139
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	8 cut(s)	458, 464, 473, 528, 573, 647, 648, 827
BseGI	GGATG	1 cut(s)	811
BseLI	CCNNNNNNNGG	5 cut(s)	459, 608, 611, 654, 776
BseMII	CTCAG	3 cut(s)	77, 494, 626
BseRI	GAGGAG	4 cut(s)	440, 442, 503, 758
BseX3I	CGGCCG	2 cut(s)	378, 461
BseXI	GCAGC	7 cut(s)	73, 186, 256, 315, 490, 643, 747
Bsh1236I	CGCG	1 cut(s)	460
Bsh1285I	CGRYCG	2 cut(s)	381, 464
BshFI	GGCC	2 cut(s)	380, 463
BshTI	ACCGGT	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	123
BsiEI	CGRYCG	2 cut(s)	381, 464
BsiHKAI	GWGCWC	1 cut(s)	452
BsiHKCI	CYCGRG	1 cut(s)	647
BslI	CCNNNNNNNGG	5 cut(s)	459, 608, 611, 654, 776
BsmAI	GTCTC	3 cut(s)	555, 665, 740
BsmBI	CGTCTC	2 cut(s)	665, 740
BsnI	GGCC	2 cut(s)	380, 463
BsoBI	CYCGRG	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	4 cut(s)	112, 152, 543, 751
Bsp19I	CCATGG	1 cut(s)	573
BspANI	GGCC	2 cut(s)	380, 463
BspCNI	CTCAG	3 cut(s)	78, 495, 627
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	6, 154
BspMI	ACCTGC	1 cut(s)	421
BspPI	GGATC	4 cut(s)	107, 147, 160, 759
BsrBI	CCGCTC	3 cut(s)	144, 655, 774
BsrFI	RCCGGY	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	8 cut(s)	458, 464, 473, 528, 573, 647, 648, 827
BssMI	GATC	4 cut(s)	112, 152, 543, 751
BssNI	GRCGYC	2 cut(s)	77, 129
BssT1I	CCWWGG	2 cut(s)	528, 573
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	2 cut(s)	22, 181
BstACI	GRCGYC	2 cut(s)	77, 129
BstC8I	GCNNGC	2 cut(s)	537, 714
BstDEI	CTNAG	3 cut(s)	86, 503, 635
BstDSI	CCRYGG	4 cut(s)	458, 473, 573, 827
BstF5I	GGATG	1 cut(s)	811
BstFNI	CGCG	1 cut(s)	460
BstKTI	GATC	4 cut(s)	115, 155, 546, 754
BstMAI	GTCTC	3 cut(s)	555, 665, 740
BstMBI	GATC	4 cut(s)	112, 152, 543, 751
BstMCI	CGRYCG	2 cut(s)	381, 464
BstMWI	GCNNNNNNNGC	3 cut(s)	652, 713, 780
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	3 cut(s)	137, 646, 647
BstUI	CGCG	1 cut(s)	460
BstV1I	GCAGC	7 cut(s)	73, 186, 256, 315, 490, 643, 747
BstX2I	RGATCY	2 cut(s)	152, 751
BstXI	CCANNNNNNTGG	2 cut(s)	163, 535
BstYI	RGATCY	2 cut(s)	152, 751
BstZI	CGGCCG	2 cut(s)	378, 461
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	380, 463
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	4 cut(s)	458, 473, 573, 827
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	811
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	1 cut(s)	845
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	2 cut(s)	537, 714
Cfr10I	RCCGGY	1 cut(s)	282
Cfr42I	CCGCGG	1 cut(s)	461
Cfr9I	CCCGGG	1 cut(s)	647
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	3 cut(s)	67, 85, 637
Csp6I	GTAC	1 cut(s)	97
CspAI	ACCGGT	1 cut(s)	282
CviAII	CATG	1 cut(s)	574
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	3 cut(s)	86, 503, 635
DpnI	GATC	4 cut(s)	114, 154, 545, 753
DpnII	GATC	4 cut(s)	112, 152, 543, 751
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
EaeI	YGGCCR	2 cut(s)	378, 461
EagI	CGGCCG	2 cut(s)	378, 461
EciI	GGCGGA	2 cut(s)	364, 554
Ecl136II	GAGCTC	1 cut(s)	450
EclXI	CGGCCG	2 cut(s)	378, 461
Eco130I	CCWWGG	2 cut(s)	528, 573
Eco24I	GRGCYC	1 cut(s)	452
Eco52I	CGGCCG	2 cut(s)	378, 461
Eco53kI	GAGCTC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	854
Eco88I	CYCGRG	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	450
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	2 cut(s)	528, 573
EcoT38I	GRGCYC	1 cut(s)	452
ErhI	CCWWGG	2 cut(s)	528, 573
Esp3I	CGTCTC	2 cut(s)	665, 740
FaeI	CATG	1 cut(s)	577
FaiI	YATR	3 cut(s)	275, 341, 575
FatI	CATG	1 cut(s)	573
FauI	CCCGC	2 cut(s)	124, 705
FblI	GTMKAC	2 cut(s)	56, 108
FokI	GGATG	1 cut(s)	818
FriOI	GRGCYC	1 cut(s)	452
GsuI	CTGGAG	2 cut(s)	160, 214
HaeIII	GGCC	2 cut(s)	380, 463
HgaI	GACGC	3 cut(s)	67, 85, 637
Hin1I	GRCGYC	2 cut(s)	77, 129
Hin1II	CATG	1 cut(s)	577
HincII	GTYRAC	3 cut(s)	57, 109, 627
HindII	GTYRAC	3 cut(s)	57, 109, 627
HinfI	GANTC	5 cut(s)	38, 53, 385, 469, 676
HphI	GGTGA	5 cut(s)	178, 394, 445, 632, 749
Hpy166II	GTNNAC	4 cut(s)	42, 57, 109, 627
Hpy188I	TCNGA	8 cut(s)	75, 87, 267, 681, 704, 796, 805, 858
Hpy188III	TCNNGA	1 cut(s)	818
Hpy8I	GTNNAC	4 cut(s)	42, 57, 109, 627
Hpy99I	CGWCG	7 cut(s)	61, 79, 110, 113, 152, 448, 805
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	2 cut(s)	22, 181
HpyCH4IV	ACGT	2 cut(s)	95, 129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	652, 713, 780
HpyF3I	CTNAG	3 cut(s)	86, 503, 635
HpySE526I	ACGT	2 cut(s)	95, 129
Hsp92I	GRCGYC	2 cut(s)	77, 129
Hsp92II	CATG	1 cut(s)	577
KspI	CCGCGG	1 cut(s)	461
Kzo9I	GATC	4 cut(s)	112, 152, 543, 751
Lsp1109I	GCAGC	7 cut(s)	73, 186, 256, 315, 490, 643, 747
LweI	GCATC	2 cut(s)	633, 823
MaeII	ACGT	2 cut(s)	95, 129
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	4 cut(s)	114, 154, 545, 753
MbiI	CCGCTC	3 cut(s)	144, 655, 774
MboI	GATC	4 cut(s)	112, 152, 543, 751
MboII	GAAGA	4 cut(s)	181, 280, 559, 694
MflI	RGATCY	2 cut(s)	152, 751
MhlI	GDGCHC	1 cut(s)	452
MluCI	AATT	4 cut(s)	290, 354, 583, 868
MlyI	GAGTC	3 cut(s)	47, 62, 685
MmeI	TCCRAC	3 cut(s)	98, 321, 783
MroXI	GAANNNNTTC	1 cut(s)	686
MspA1I	CMGCKG	4 cut(s)	346, 460, 481, 634
MspR9I	CCNGG	3 cut(s)	139, 648, 649
MvaI	CCWGG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	460
MwoI	GCNNNNNNNGC	3 cut(s)	652, 713, 780
NciI	CCSGG	2 cut(s)	648, 649
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	4 cut(s)	112, 152, 543, 751
NlaIII	CATG	1 cut(s)	577
NlaIV	GGNNCC	2 cut(s)	6, 154
NmeAIII	GCCGAG	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	433
PaqCI	CACCTGC	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	686
PfeI	GAWTC	2 cut(s)	385, 469
PinAI	ACCGGT	1 cut(s)	282
PleI	GAGTC	3 cut(s)	46, 61, 684
PpsI	GAGTC	3 cut(s)	46, 61, 684
Psp124BI	GAGCTC	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	6, 154
PsuI	RGATCY	2 cut(s)	152, 751
PvuII	CAGCTG	2 cut(s)	481, 634
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacI	GAGCTC	1 cut(s)	452
SacII	CCGCGG	1 cut(s)	461
SalI	GTCGAC	2 cut(s)	55, 107
Sau3AI	GATC	4 cut(s)	112, 152, 543, 751
SchI	GAGTC	3 cut(s)	47, 62, 685
ScrFI	CCNGG	3 cut(s)	139, 648, 649
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	2 cut(s)	633, 823
Sfr303I	CCGCGG	1 cut(s)	461
SgrBI	CCGCGG	1 cut(s)	461
SgrDI	CGTCGACG	1 cut(s)	107
SmaI	CCCGGG	1 cut(s)	649
Sse9I	AATT	4 cut(s)	290, 354, 583, 868
SstI	GAGCTC	1 cut(s)	452
StyD4I	CCNGG	3 cut(s)	137, 646, 647
StyI	CCWWGG	2 cut(s)	528, 573
TaaI	ACNGT	2 cut(s)	22, 181
TaiI	ACGT	2 cut(s)	98, 132
TaqI	TCGA	5 cut(s)	56, 108, 123, 446, 581
TasI	AATT	4 cut(s)	290, 354, 583, 868
TauI	GCSGC	6 cut(s)	147, 328, 349, 460, 463, 766
TfiI	GAWTC	2 cut(s)	385, 469
TscAI	CASTG	1 cut(s)	845
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	7 cut(s)	61, 199, 244, 328, 478, 631, 760
Tsp45I	GTSAC	1 cut(s)	433
TspGWI	ACGGA	4 cut(s)	165, 273, 462, 764
TspMI	CCCGGG	1 cut(s)	647
TspRI	CASTG	1 cut(s)	845
XapI	RAATTY	1 cut(s)	290
XmaI	CCCGGG	1 cut(s)	647
XmiI	GTMKAC	2 cut(s)	56, 108
XmnI	GAANNNNTTC	1 cut(s)	686
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.