FvH4_7g29190

Heat Stress Transcription Factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013887
Physical Location & Seq
Reverse (-)
21566844 .. 21568458
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29190.t1

Sequence Viewer

Length: 870 bp
ATGGCTCCTCTGCCGGTGGAGCAGAACGGCGAGTCCACCTCCGGCGAGTCGACGCAGCAGCAGCAGCAGCGAGGCTCCCCGACGCCGTTCCTCAGCAAAACGTACCAGCTCGTCGACGATCCGGCCATCGATGACATCATCGCCTGGAGCGGCGACGGATCAAGCTTCGTCGTCAAGAACCCCACCGTGTTCGCCAGGGATTTGCTCCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAGCTCAACACCTACGGATTCCGGAAGATCATACCGGATCGGTGGGAGTTTTCCAATGATGGCTTCCGTAAAGGCCAGAAACATCTGCTCTGCGACATACAGCGGCGGAGGATAACGCCGCCGGTGGTGGCGTCTCCGGCGGGTGTTCCGGCGAAATTGGTTAACTCGCCGGCGAACTCCGGCGAGGAGCAGGTGACGACGACGACGACGACGACGGCTTCGTCGAGCTCCTCGCCGCGGCCAAGGATTCCGTGGCAGCTGGTGGAGGAGAACGAGAGGCTGAGGAAGGAGAATCTCCGGCTGACCAAGGAGGTCGCCGAGATCAAGTGTCTTTGTCACAACGTCTTCACCATGGTGTCCAGCTACGCCTGCGCGAACCCTCCGGAGGGCGGTGAGCTGACGCGGCTGGAGTTGGCGCCGGGGAAGGGGTTCTCCGGCAGGGAGACGAGTCCGAAGATTTTCGGGGTGGAAATCGGAGCGAAAAGAGCGAGGGAGGAAGGTGGCGGCGGTGGTGGTGAGGGGCGGTGGCAACGTGGCGATGTGAAATCAGAGGCGTGTGATCATAGTGACACGCCGTGGCTGAAGCAATGCCACAGAGCCAATCAGAGGGTGTGTAATTGA

Protein Analysis

290

Amino Acids

31.97

Weight (kDa)

8.82

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 30 - 119 3.1e-30 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62020
fragaria_vesca FvH4_7g29190
malus_domestica MD01G1198700.v1.1 MD07G1266500.v1.1
prunus_persica Prupe.2G292100_v2.0.a1
pyrus_communis pycom01g20880 pycom07g24430
rosa_chinensis RchiOBHm_Chr1g0376961
rosa_laevigata RLG00000026556
rosa_multiflora Rmu_ssc0000155.1_g000034
rosa_roxburghii Rroxscaffold_4G00281590
rosa_rugosa Rorug01G0399900
rosa_samantha Rh1AG417100 Rh1BG376500 Rh1CG390300 Rh1DG407200
rosa_wichuraiana Rw1G036610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 430
AasI GACNNNNNNGTC 1 cut(s) 469
Acc36I ACCTGC 1 cut(s) 430
AccB1I GGYRCC 1 cut(s) 664
AccBSI CCGCTC 1 cut(s) 150
AccI GTMKAC 2 cut(s) 50, 114
AccII CGCG 3 cut(s) 487, 623, 652
AccIII TCCGGA 2 cut(s) 270, 631
AclWI GGATC 3 cut(s) 113, 166, 294
AcoI YGGCCR 2 cut(s) 123, 488
AcuI CTGAAG 1 cut(s) 851
AcyI GRCGYC 3 cut(s) 83, 380, 665
AdeI CACNNNGTG 1 cut(s) 825
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 6 cut(s) 486, 634, 635, 638, 674, 855
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 2 cut(s) 143, 194
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AleI CACNNNNGTG 1 cut(s) 602
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 8 cut(s) 109, 165, 240, 253, 477, 508, 612, 646
AluI AGCT 8 cut(s) 109, 165, 240, 253, 477, 508, 612, 646
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 2 cut(s) 387, 686
AlwI GGATC 3 cut(s) 113, 166, 294
Aor13HI TCCGGA 2 cut(s) 270, 631
AoxI GGCC 3 cut(s) 123, 322, 488
ApeKI GCWGC 6 cut(s) 55, 58, 61, 64, 67, 505
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
Asp700I GAANNNNTTC 2 cut(s) 677, 707
AspLEI GCGC 2 cut(s) 623, 667
AsuC2I CCSGG 1 cut(s) 669
AsuHPI GGTGA 4 cut(s) 454, 589, 653, 776
BanI GGYRCC 1 cut(s) 664
BanII GRGCYC 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 586
Bbv12I GWGCWC 1 cut(s) 479
BbvCI CCTCAGC 2 cut(s) 92, 530
BbvI GCAGC 6 cut(s) 67, 70, 73, 76, 79, 517
BccI CCATC 2 cut(s) 134, 302
BceAI ACGGC 4 cut(s) 43, 70, 480, 808
BciT130I CCWGG 2 cut(s) 145, 196
BclI TGATCA 1 cut(s) 808
BcnI CCSGG 1 cut(s) 669
BcoDI GTCTC 2 cut(s) 387, 686
BfoI RGCGCY 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 430
Bme1390I CCNGG 3 cut(s) 145, 196, 669
BmiI GGNNCC 3 cut(s) 6, 76, 666
BmrFI CCNGG 3 cut(s) 145, 196, 669
BpiI GAAGAC 1 cut(s) 586
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpmI CTGGAG 3 cut(s) 166, 220, 677
Bpu10I CCTNAGC 2 cut(s) 92, 530
BpuMI CCSGG 1 cut(s) 669
Bsa29I ATCGAT 1 cut(s) 129
BsaHI GRCGYC 3 cut(s) 83, 380, 665
BsaJI CCNNGG 8 cut(s) 195, 485, 491, 500, 555, 600, 668, 824
BsaWI WCCGGW 3 cut(s) 270, 283, 631
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 6 cut(s) 486, 634, 635, 638, 674, 855
Bse118I RCCGGY 3 cut(s) 13, 370, 418
Bse3DI GCAATG 1 cut(s) 842
BseAI TCCGGA 2 cut(s) 270, 631
BseBI CCWGG 2 cut(s) 145, 196
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 8 cut(s) 195, 485, 491, 500, 555, 600, 668, 824
BseLI CCNNNNNNNGG 6 cut(s) 486, 634, 635, 638, 674, 855
BseMI GCAATG 1 cut(s) 842
BseMII CTCAG 2 cut(s) 106, 521
BseRI GAGGAG 3 cut(s) 449, 469, 530
BseXI GCAGC 6 cut(s) 67, 70, 73, 76, 79, 517
Bsh1236I CGCG 3 cut(s) 487, 623, 652
BshFI GGCC 3 cut(s) 125, 324, 490
BshNI GGYRCC 1 cut(s) 664
BshVI ATCGAT 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 479
BslI CCNNNNNNNGG 6 cut(s) 486, 634, 635, 638, 674, 855
BsmAI GTCTC 2 cut(s) 387, 686
BsmBI CGTCTC 2 cut(s) 387, 686
BsnI GGCC 3 cut(s) 125, 324, 490
Bsp1286I GDGCHC 1 cut(s) 479
Bsp13I TCCGGA 2 cut(s) 270, 631
Bsp143I GATC 6 cut(s) 118, 158, 276, 286, 570, 808
Bsp19I CCATGG 1 cut(s) 600
BspANI GGCC 3 cut(s) 125, 324, 490
BspCNI CTCAG 2 cut(s) 105, 522
BspDI ATCGAT 1 cut(s) 129
BspEI TCCGGA 2 cut(s) 270, 631
BspFNI CGCG 3 cut(s) 487, 623, 652
BspLI GGNNCC 3 cut(s) 6, 76, 666
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 3 cut(s) 113, 166, 294
BspT107I GGYRCC 1 cut(s) 664
BsrBI CCGCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 842
BsrFI RCCGGY 3 cut(s) 13, 370, 418
BssAI RCCGGY 3 cut(s) 13, 370, 418
BssECI CCNNGG 8 cut(s) 195, 485, 491, 500, 555, 600, 668, 824
BssMI GATC 6 cut(s) 118, 158, 276, 286, 570, 808
BssNI GRCGYC 3 cut(s) 83, 380, 665
BssT1I CCWWGG 3 cut(s) 491, 555, 600
Bst2UI CCWGG 2 cut(s) 145, 196
Bst4CI ACNGT 1 cut(s) 187
BstACI GRCGYC 3 cut(s) 83, 380, 665
BstC8I GCNNGC 3 cut(s) 251, 420, 619
BstDEI CTNAG 2 cut(s) 92, 530
BstDSI CCRYGG 4 cut(s) 485, 500, 600, 824
BstFNI CGCG 3 cut(s) 487, 623, 652
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 2 cut(s) 623, 667
BstKTI GATC 6 cut(s) 121, 161, 279, 289, 573, 811
BstMAI GTCTC 2 cut(s) 387, 686
BstMBI GATC 6 cut(s) 118, 158, 276, 286, 570, 808
BstMWI GCNNNNNNNGC 9 cut(s) 19, 61, 64, 67, 246, 386, 618, 652, 734
BstNI CCWGG 2 cut(s) 145, 196
BstSCI CCNGG 3 cut(s) 143, 194, 667
BstUI CGCG 3 cut(s) 487, 623, 652
BstV1I GCAGC 6 cut(s) 67, 70, 73, 76, 79, 517
BstV2I GAAGAC 1 cut(s) 586
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 3 cut(s) 125, 324, 490
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 4 cut(s) 485, 500, 600, 824
BtgZI GCGATG 2 cut(s) 124, 801
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 3 cut(s) 251, 420, 619
CfoI GCGC 2 cut(s) 623, 667
Cfr10I RCCGGY 3 cut(s) 13, 370, 418
Cfr42I CCGCGG 1 cut(s) 488
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 4 cut(s) 61, 91, 369, 658
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 601
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 92, 530
DinI GGCGCC 1 cut(s) 666
DpnI GATC 6 cut(s) 120, 160, 278, 288, 572, 810
DpnII GATC 6 cut(s) 118, 158, 276, 286, 570, 808
DraIII CACNNNGTG 1 cut(s) 825
DrdI GACNNNNNNGTC 1 cut(s) 469
DseDI GACNNNNNNGTC 1 cut(s) 469
EaeI YGGCCR 2 cut(s) 123, 488
EciI GGCGGA 2 cut(s) 236, 370
Ecl136II GAGCTC 1 cut(s) 477
Eco130I CCWWGG 3 cut(s) 491, 555, 600
Eco24I GRGCYC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 851
EcoICRI GAGCTC 1 cut(s) 477
EcoRII CCWGG 2 cut(s) 143, 194
EcoT14I CCWWGG 3 cut(s) 491, 555, 600
EcoT38I GRGCYC 1 cut(s) 479
EgeI GGCGCC 1 cut(s) 666
EheI GGCGCC 1 cut(s) 666
ErhI CCWWGG 3 cut(s) 491, 555, 600
Esp3I CGTCTC 2 cut(s) 387, 686
FaeI CATG 1 cut(s) 604
FaiI YATR 4 cut(s) 281, 347, 602, 813
FatI CATG 1 cut(s) 600
FauI CCCGC 1 cut(s) 382
FbaI TGATCA 1 cut(s) 808
FblI GTMKAC 2 cut(s) 50, 114
FriOI GRGCYC 1 cut(s) 479
GlaI GCGC 2 cut(s) 622, 666
GsuI CTGGAG 3 cut(s) 166, 220, 677
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 3 cut(s) 125, 324, 490
HgaI GACGC 4 cut(s) 61, 91, 369, 658
HhaI GCGC 2 cut(s) 623, 667
Hin1I GRCGYC 3 cut(s) 83, 380, 665
Hin1II CATG 1 cut(s) 604
Hin6I GCGC 2 cut(s) 621, 665
HinP1I GCGC 2 cut(s) 621, 665
HincII GTYRAC 3 cut(s) 51, 115, 412
HindII GTYRAC 3 cut(s) 51, 115, 412
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 6 cut(s) 32, 47, 267, 496, 541, 697
HpaI GTTAAC 1 cut(s) 412
HphI GGTGA 4 cut(s) 454, 589, 653, 776
Hpy166II GTNNAC 4 cut(s) 36, 51, 115, 412
Hpy188I TCNGA 4 cut(s) 702, 725, 799, 855
Hpy188III TCNNGA 3 cut(s) 175, 271, 632
Hpy8I GTNNAC 4 cut(s) 36, 51, 115, 412
HpyAV CCTTC 3 cut(s) 529, 667, 740
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 3 cut(s) 101, 591, 781
HpyF10VI GCNNNNNNNGC 9 cut(s) 19, 61, 64, 67, 246, 386, 618, 652, 734
HpyF3I CTNAG 2 cut(s) 92, 530
HpySE526I ACGT 3 cut(s) 101, 591, 781
Hsp92I GRCGYC 3 cut(s) 83, 380, 665
Hsp92II CATG 1 cut(s) 604
HspAI GCGC 2 cut(s) 621, 665
KasI GGCGCC 1 cut(s) 664
Kpn2I TCCGGA 2 cut(s) 270, 631
KroI GCCGGC 1 cut(s) 418
KroNI GCCGGC 1 cut(s) 420
Ksp22I TGATCA 1 cut(s) 808
KspAI GTTAAC 1 cut(s) 412
KspI CCGCGG 1 cut(s) 488
Kzo9I GATC 6 cut(s) 118, 158, 276, 286, 570, 808
LmnI GCTCC 8 cut(s) 10, 19, 80, 147, 210, 436, 482, 725
Lsp1109I GCAGC 6 cut(s) 67, 70, 73, 76, 79, 517
MaeII ACGT 3 cut(s) 101, 591, 781
MaeIII GTNAC 3 cut(s) 442, 584, 815
MalI GATC 6 cut(s) 120, 160, 278, 288, 572, 810
MbiI CCGCTC 1 cut(s) 150
MboI GATC 6 cut(s) 118, 158, 276, 286, 570, 808
MboII GAAGA 3 cut(s) 286, 586, 715
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 2 cut(s) 404, 865
Mly113I GGCGCC 1 cut(s) 665
MlyI GAGTC 3 cut(s) 41, 56, 706
MreI CGCCGGCG 1 cut(s) 418
MroI TCCGGA 2 cut(s) 270, 631
MroNI GCCGGC 1 cut(s) 418
MroXI GAANNNNTTC 2 cut(s) 677, 707
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 602
MspA1I CMGCKG 3 cut(s) 352, 487, 508
MspR9I CCNGG 3 cut(s) 145, 196, 669
MvaI CCWGG 2 cut(s) 145, 196
MvnI CGCG 3 cut(s) 487, 623, 652
MwoI GCNNNNNNNGC 9 cut(s) 19, 61, 64, 67, 246, 386, 618, 652, 734
NaeI GCCGGC 1 cut(s) 420
NarI GGCGCC 1 cut(s) 665
NciI CCSGG 1 cut(s) 669
NcoI CCATGG 1 cut(s) 600
NdeII GATC 6 cut(s) 118, 158, 276, 286, 570, 808
NgoMIV GCCGGC 1 cut(s) 418
NlaIII CATG 1 cut(s) 604
NlaIV GGNNCC 3 cut(s) 6, 76, 666
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 3 cut(s) 442, 584, 815
OliI CACNNNNGTG 1 cut(s) 602
PaqCI CACCTGC 1 cut(s) 430
PcsI WCGNNNNNNNCGW 5 cut(s) 452, 455, 458, 467, 470
PdiI GCCGGC 1 cut(s) 420
PdmI GAANNNNTTC 2 cut(s) 677, 707
PfeI GAWTC 3 cut(s) 267, 496, 541
PleI GAGTC 3 cut(s) 40, 55, 705
PluTI GGCGCC 1 cut(s) 668
PpsI GAGTC 3 cut(s) 40, 55, 705
Psp124BI GAGCTC 1 cut(s) 479
Psp6I CCWGG 2 cut(s) 143, 194
PspGI CCWGG 2 cut(s) 143, 194
PspN4I GGNNCC 3 cut(s) 6, 76, 666
PvuII CAGCTG 1 cut(s) 508
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 602
SacI GAGCTC 1 cut(s) 479
SacII CCGCGG 1 cut(s) 488
SalI GTCGAC 2 cut(s) 49, 113
SaqAI TTAA 1 cut(s) 411
Sau3AI GATC 6 cut(s) 118, 158, 276, 286, 570, 808
SchI GAGTC 3 cut(s) 41, 56, 706
ScrFI CCNGG 3 cut(s) 145, 196, 669
SduI GDGCHC 1 cut(s) 479
SfoI GGCGCC 1 cut(s) 666
Sfr303I CCGCGG 1 cut(s) 488
SgrAI CRCCGGYG 2 cut(s) 370, 418
SgrBI CCGCGG 1 cut(s) 488
SgrDI CGTCGACG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 602
Sse9I AATT 2 cut(s) 404, 865
SspDI GGCGCC 1 cut(s) 664
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 3 cut(s) 143, 194, 667
StyI CCWWGG 3 cut(s) 491, 555, 600
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 3 cut(s) 104, 594, 784
TaqI TCGA 4 cut(s) 50, 114, 129, 473
TasI AATT 2 cut(s) 404, 865
TauI GCSGC 7 cut(s) 153, 355, 370, 487, 490, 655, 756
TfiI GAWTC 3 cut(s) 267, 496, 541
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TseFI GTSAC 3 cut(s) 442, 584, 815
TseI GCWGC 6 cut(s) 55, 58, 61, 64, 67, 505
Tsp45I GTSAC 3 cut(s) 442, 584, 815
TspGWI ACGGA 4 cut(s) 171, 279, 305, 489
XcmI CCANNNNNNNNNTGG 1 cut(s) 498
XmiI GTMKAC 2 cut(s) 50, 114
XmnI GAANNNNTTC 2 cut(s) 677, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.