Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000155.1

Orthogroup ID

OG0013887

Physical Location & Seq

Genomic Coordinates Forward (+)

130947 .. 131924

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000155.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggctcctccgcctacggtggagcagaacggcgagtccacctccggcgagtcgacgcagcgaggctctccgacgccgtttctgagcaaaacgtaccagctcgtcgacgatcccgccatcgatgacgtcatcgcctggagcggcgacggatccagcttcgtggtgaagaaccccaccgtgttcgccagagatttgctgcccaagtatttcaagcacaacaacttctccagcttcgtccggcagctcaacacctacggatttcggaagattatacctgaccggtgggaattctccaacgactgcttccgcagaggcgagaagcggctgctctgcgaaatacagcggcggagaatcacgcctccggcggctgctccggccgtgattccggcgaaacctatcacctctccggcgaactccggcgaggagcaggtgacgacttcgtcgagctcctcgccgcggccgaggattccgtggcagctggtggaggagaacgagaggctgaggaaggagaacctccggctgaccaaggagctggcggagatcaagtctctctgccacaacatcttctccctggtgtcgaattacgcctgtaataagccaccggagggcggtttaggtgagttgacacagctgagtttgatgcccggggagcggttttccggcggggagacgagtccgaagattttcggggtggaaatcggagcgaagcgggcgagggaggaaggcggtgggggcgatgaggagacggatctacggctgcggcaaccgagcggtggtggcgttgtgaaatcagagccgtcggatgtggagcatcgtgagaagccgtggctgaagcagtgccacagggctaatcagagggtgtgtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

289

Amino Acids

32.15

Weight (kDa)

8.5

Isoelectric Point (pI)

60.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62020
fragaria_vesca	FvH4_7g29190
malus_domestica	MD01G1198700.v1.1 MD07G1266500.v1.1
prunus_persica	Prupe.2G292100_v2.0.a1
pyrus_communis	pycom01g20880 pycom07g24430
rosa_chinensis	RchiOBHm_Chr1g0376961
rosa_laevigata	RLG00000026556
rosa_multiflora	Rmu_ssc0000155.1_g000034
rosa_roxburghii	Rroxscaffold_4G00281590
rosa_rugosa	Rorug01G0399900
rosa_samantha	Rh1AG417100 Rh1BG376500 Rh1CG390300 Rh1DG407200
rosa_wichuraiana	Rw1G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	418
AasI	GACNNNNNNGTC	1 cut(s)	439
AatII	GACGTC	1 cut(s)	129
Acc36I	ACCTGC	1 cut(s)	418
AccBSI	CCGCTC	3 cut(s)	141, 652, 771
AccI	GTMKAC	2 cut(s)	53, 105
AccII	CGCG	1 cut(s)	457
AclWI	GGATC	4 cut(s)	104, 144, 157, 756
AcoI	YGGCCR	2 cut(s)	375, 458
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	851
AcyI	GRCGYC	2 cut(s)	74, 126
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	5 cut(s)	456, 605, 608, 651, 773
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	134, 570
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AloI	GAACNNNNNNTCC	2 cut(s)	20, 52
AluBI	AGCT	8 cut(s)	100, 156, 231, 244, 447, 478, 532, 631
AluI	AGCT	8 cut(s)	100, 156, 231, 244, 447, 478, 532, 631
Alw21I	GWGCWC	1 cut(s)	449
Alw26I	GTCTC	3 cut(s)	552, 662, 737
AlwI	GGATC	4 cut(s)	104, 144, 157, 756
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	2 cut(s)	375, 458
ApeKI	GCWGC	7 cut(s)	58, 196, 241, 325, 368, 475, 757
ApoI	RAATTY	1 cut(s)	287
AsiGI	ACCGGT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	683
AsuC2I	CCSGG	2 cut(s)	645, 646
AsuHPI	GGTGA	4 cut(s)	175, 391, 442, 629
AvaI	CYCGRG	1 cut(s)	644
BamHI	GGATCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	449
BbvCI	CCTCAGC	1 cut(s)	500
BbvI	GCAGC	7 cut(s)	70, 183, 253, 312, 355, 487, 744
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	6 cut(s)	46, 61, 362, 770, 781, 808
BciT130I	CCWGG	2 cut(s)	136, 572
BcnI	CCSGG	2 cut(s)	645, 646
BcoDI	GTCTC	3 cut(s)	552, 662, 737
BfuAI	ACCTGC	1 cut(s)	418
Bme1390I	CCNGG	4 cut(s)	136, 572, 645, 646
BmeT110I	CYCGRG	1 cut(s)	644
BmiI	GGNNCC	2 cut(s)	6, 151
BmrFI	CCNGG	4 cut(s)	136, 572, 645, 646
BmsI	GCATC	2 cut(s)	630, 820
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	2 cut(s)	157, 211
Bpu10I	CCTNAGC	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	645, 646
Bsa29I	ATCGAT	1 cut(s)	120
BsaHI	GRCGYC	2 cut(s)	74, 126
BsaJI	CCNNGG	8 cut(s)	455, 461, 470, 525, 570, 644, 645, 824
BsaWI	WCCGGW	2 cut(s)	279, 601
BsaXI	ACNNNNNCTCC	6 cut(s)	209, 239, 530, 551, 560, 581
Bsc4I	CCNNNNNNNGG	5 cut(s)	456, 605, 608, 651, 773
Bse118I	RCCGGY	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	136, 572
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	8 cut(s)	455, 461, 470, 525, 570, 644, 645, 824
BseGI	GGATG	1 cut(s)	808
BseLI	CCNNNNNNNGG	5 cut(s)	456, 605, 608, 651, 773
BseMII	CTCAG	3 cut(s)	74, 491, 623
BseRI	GAGGAG	4 cut(s)	437, 439, 500, 755
BseX3I	CGGCCG	2 cut(s)	375, 458
BseXI	GCAGC	7 cut(s)	70, 183, 253, 312, 355, 487, 744
Bsh1236I	CGCG	1 cut(s)	457
Bsh1285I	CGRYCG	2 cut(s)	378, 461
BshFI	GGCC	2 cut(s)	377, 460
BshTI	ACCGGT	1 cut(s)	279
BshVI	ATCGAT	1 cut(s)	120
BsiEI	CGRYCG	2 cut(s)	378, 461
BsiHKAI	GWGCWC	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	644
BslI	CCNNNNNNNGG	5 cut(s)	456, 605, 608, 651, 773
BsmAI	GTCTC	3 cut(s)	552, 662, 737
BsmBI	CGTCTC	2 cut(s)	662, 737
BsnI	GGCC	2 cut(s)	377, 460
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	4 cut(s)	109, 149, 540, 748
BspANI	GGCC	2 cut(s)	377, 460
BspCNI	CTCAG	3 cut(s)	75, 492, 624
BspDI	ATCGAT	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	6, 151
BspMI	ACCTGC	1 cut(s)	418
BspPI	GGATC	4 cut(s)	104, 144, 157, 756
BsrBI	CCGCTC	3 cut(s)	141, 652, 771
BsrFI	RCCGGY	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	8 cut(s)	455, 461, 470, 525, 570, 644, 645, 824
BssMI	GATC	4 cut(s)	109, 149, 540, 748
BssNI	GRCGYC	2 cut(s)	74, 126
BssT1I	CCWWGG	1 cut(s)	525
Bst2UI	CCWGG	2 cut(s)	136, 572
Bst4CI	ACNGT	2 cut(s)	19, 178
BstACI	GRCGYC	2 cut(s)	74, 126
BstC8I	GCNNGC	2 cut(s)	534, 711
BstDEI	CTNAG	3 cut(s)	83, 500, 632
BstDSI	CCRYGG	3 cut(s)	455, 470, 824
BstF5I	GGATG	1 cut(s)	808
BstFNI	CGCG	1 cut(s)	457
BstKTI	GATC	4 cut(s)	112, 152, 543, 751
BstMAI	GTCTC	3 cut(s)	552, 662, 737
BstMBI	GATC	4 cut(s)	109, 149, 540, 748
BstMCI	CGRYCG	2 cut(s)	378, 461
BstMWI	GCNNNNNNNGC	5 cut(s)	374, 649, 710, 732, 777
BstNI	CCWGG	2 cut(s)	136, 572
BstSCI	CCNGG	4 cut(s)	134, 570, 643, 644
BstUI	CGCG	1 cut(s)	457
BstV1I	GCAGC	7 cut(s)	70, 183, 253, 312, 355, 487, 744
BstX2I	RGATCY	2 cut(s)	149, 748
BstXI	CCANNNNNNTGG	2 cut(s)	160, 532
BstYI	RGATCY	2 cut(s)	149, 748
BstZI	CGGCCG	2 cut(s)	375, 458
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	377, 460
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	3 cut(s)	455, 470, 824
BtgZI	GCGATG	2 cut(s)	115, 750
BtsCI	GGATG	1 cut(s)	808
BtsI	GCAGTG	1 cut(s)	842
BtsIMutI	CAGTG	1 cut(s)	842
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	2 cut(s)	534, 711
Cfr10I	RCCGGY	1 cut(s)	279
Cfr42I	CCGCGG	1 cut(s)	458
Cfr9I	CCCGGG	1 cut(s)	644
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	2 cut(s)	64, 82
Csp6I	GTAC	1 cut(s)	94
CspAI	ACCGGT	1 cut(s)	279
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	3 cut(s)	83, 500, 632
DpnI	GATC	4 cut(s)	111, 151, 542, 750
DpnII	GATC	4 cut(s)	109, 149, 540, 748
DrdI	GACNNNNNNGTC	1 cut(s)	439
DseDI	GACNNNNNNGTC	1 cut(s)	439
EaeI	YGGCCR	2 cut(s)	375, 458
EagI	CGGCCG	2 cut(s)	375, 458
EciI	GGCGGA	2 cut(s)	361, 551
Ecl136II	GAGCTC	1 cut(s)	447
EclXI	CGGCCG	2 cut(s)	375, 458
Eco130I	CCWWGG	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	449
Eco52I	CGGCCG	2 cut(s)	375, 458
Eco53kI	GAGCTC	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	851
Eco88I	CYCGRG	1 cut(s)	644
EcoICRI	GAGCTC	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	134, 570
EcoT14I	CCWWGG	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	525
Esp3I	CGTCTC	2 cut(s)	662, 737
FaiI	YATR	1 cut(s)	272
FauI	CCCGC	3 cut(s)	121, 656, 702
FblI	GTMKAC	2 cut(s)	53, 105
FokI	GGATG	1 cut(s)	815
FriOI	GRGCYC	1 cut(s)	449
GsuI	CTGGAG	2 cut(s)	157, 211
HaeIII	GGCC	2 cut(s)	377, 460
HgaI	GACGC	2 cut(s)	64, 82
Hin1I	GRCGYC	2 cut(s)	74, 126
HincII	GTYRAC	3 cut(s)	54, 106, 624
HindII	GTYRAC	3 cut(s)	54, 106, 624
HinfI	GANTC	6 cut(s)	35, 50, 351, 382, 466, 673
HphI	GGTGA	4 cut(s)	175, 391, 442, 629
Hpy166II	GTNNAC	4 cut(s)	39, 54, 106, 624
Hpy188I	TCNGA	8 cut(s)	72, 84, 264, 678, 701, 793, 802, 855
Hpy188III	TCNNGA	1 cut(s)	815
Hpy8I	GTNNAC	4 cut(s)	39, 54, 106, 624
Hpy99I	CGWCG	7 cut(s)	58, 76, 107, 110, 149, 445, 802
HpyAV	CCTTC	2 cut(s)	499, 716
HpyCH4III	ACNGT	2 cut(s)	19, 178
HpyCH4IV	ACGT	2 cut(s)	92, 126
HpyF10VI	GCNNNNNNNGC	5 cut(s)	374, 649, 710, 732, 777
HpyF3I	CTNAG	3 cut(s)	83, 500, 632
HpySE526I	ACGT	2 cut(s)	92, 126
Hsp92I	GRCGYC	2 cut(s)	74, 126
KspI	CCGCGG	1 cut(s)	458
Kzo9I	GATC	4 cut(s)	109, 149, 540, 748
Lsp1109I	GCAGC	7 cut(s)	70, 183, 253, 312, 355, 487, 744
LweI	GCATC	2 cut(s)	630, 820
MaeII	ACGT	2 cut(s)	92, 126
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	4 cut(s)	111, 151, 542, 750
MbiI	CCGCTC	3 cut(s)	141, 652, 771
MboI	GATC	4 cut(s)	109, 149, 540, 748
MboII	GAAGA	4 cut(s)	178, 277, 556, 691
MflI	RGATCY	2 cut(s)	149, 748
MhlI	GDGCHC	1 cut(s)	449
MluCI	AATT	3 cut(s)	287, 580, 865
MlyI	GAGTC	3 cut(s)	44, 59, 682
MmeI	TCCRAC	3 cut(s)	95, 318, 780
MroXI	GAANNNNTTC	1 cut(s)	683
MspA1I	CMGCKG	4 cut(s)	343, 457, 478, 631
MspR9I	CCNGG	4 cut(s)	136, 572, 645, 646
MvaI	CCWGG	2 cut(s)	136, 572
MvnI	CGCG	1 cut(s)	457
MwoI	GCNNNNNNNGC	5 cut(s)	374, 649, 710, 732, 777
NciI	CCSGG	2 cut(s)	645, 646
NdeII	GATC	4 cut(s)	109, 149, 540, 748
NlaIV	GGNNCC	2 cut(s)	6, 151
NmeAIII	GCCGAG	1 cut(s)	486
NmuCI	GTSAC	1 cut(s)	430
PaqCI	CACCTGC	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	2 cut(s)	440, 458
PdmI	GAANNNNTTC	1 cut(s)	683
PfeI	GAWTC	3 cut(s)	351, 382, 466
PflFI	GACNNNGTC	1 cut(s)	439
PinAI	ACCGGT	1 cut(s)	279
PleI	GAGTC	3 cut(s)	43, 58, 681
PpsI	GAGTC	3 cut(s)	43, 58, 681
Psp124BI	GAGCTC	1 cut(s)	449
Psp6I	CCWGG	2 cut(s)	134, 570
PspGI	CCWGG	2 cut(s)	134, 570
PspN4I	GGNNCC	2 cut(s)	6, 151
PsuI	RGATCY	2 cut(s)	149, 748
PsyI	GACNNNGTC	1 cut(s)	439
PvuII	CAGCTG	2 cut(s)	478, 631
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	449
SacII	CCGCGG	1 cut(s)	458
SalI	GTCGAC	2 cut(s)	52, 104
Sau3AI	GATC	4 cut(s)	109, 149, 540, 748
SchI	GAGTC	3 cut(s)	44, 59, 682
ScrFI	CCNGG	4 cut(s)	136, 572, 645, 646
SduI	GDGCHC	1 cut(s)	449
SfaNI	GCATC	2 cut(s)	630, 820
Sfr303I	CCGCGG	1 cut(s)	458
SgrBI	CCGCGG	1 cut(s)	458
SgrDI	CGTCGACG	1 cut(s)	104
SmaI	CCCGGG	1 cut(s)	646
Sse9I	AATT	3 cut(s)	287, 580, 865
SstI	GAGCTC	1 cut(s)	449
StyD4I	CCNGG	4 cut(s)	134, 570, 643, 644
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	2 cut(s)	19, 178
TaiI	ACGT	2 cut(s)	95, 129
TaqI	TCGA	5 cut(s)	53, 105, 120, 443, 578
TasI	AATT	3 cut(s)	287, 580, 865
TauI	GCSGC	7 cut(s)	144, 325, 346, 368, 457, 460, 763
TfiI	GAWTC	3 cut(s)	351, 382, 466
TscAI	CASTG	1 cut(s)	842
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	7 cut(s)	58, 196, 241, 325, 368, 475, 757
Tsp45I	GTSAC	1 cut(s)	430
TspGWI	ACGGA	4 cut(s)	162, 270, 459, 761
TspMI	CCCGGG	1 cut(s)	644
TspRI	CASTG	1 cut(s)	842
Tth111I	GACNNNGTC	1 cut(s)	439
XapI	RAATTY	1 cut(s)	287
XmaI	CCCGGG	1 cut(s)	644
XmiI	GTMKAC	2 cut(s)	53, 105
XmnI	GAANNNNTTC	1 cut(s)	683
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.