Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0013887

Physical Location & Seq

Genomic Coordinates Forward (+)

3778970 .. 3779957

Gene Structure 988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026556

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTCCTCCTCCGCCAACGGTAGAGCAGAACGGCGAGTCCACCTCCGGGGAGTCGACGCAGAGAGGCTCTCCGACGCCGTTTCTGAGCAAAACGTACCAGCTCGTCGACGATCCCGCCATCGATGACGTCATCGCCTGGAGCGGCGACGGATCCAGCTTCGTGGTGAAGAACCCCACCGCGTTCGCCAGAGATTTGCTGCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAACACCTACGGATTTCGGAAGATTATACCTGACCGGTGGGAATTCTCCAACGACTGCTTCCGCAGAGGCGAGAAGCGGCTGCTCTGCGACATACAGCGGCGGAGAATTACGCCTCCGGCGGTTGCTCCGGCGGTTGCTCCGGCCGTGATTCCGGCGAAGCCTATCACTTCTCCGGCGAACTCCGGCGAGGAGCAGATGACTACTTCGTCGAGCTCCTCGCCGCGGCCGAGGATTTCGTGGCAGCTGGTGGAGGAGAACGAGAGGCTGAGGAAGGAGAACCTCCGGCTGACCAAGGAGCTGGCGGAGATCAAGTCTCTCTGCCACAACATCTTCTCCATGGTGTCGAATTACGCCTGTAATAAGCCACCGGAGGGCGGTTTAGGTGAGTTGACGCAGCTGAGTTTGATGCCTGGGGAGCGGTTTTCCGGCTGGGAGACGAGTCCGAAGATTTTCGGGGTTGAAATCGGAGCGAAGCGAGCGAGGGAGGAAGGCGGTGGAGGCGATGAGGAGACGGATCTACGGCTGCGGCAACCGAGCGGTGGTGGCGGTGTGAAATCAGAGCCGTCGGATGTGGAGCATCGTGAGAAGCCGTGGCTGAAGCAGTGCCACAGGGCTAATCAGAGGGTGTGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

295

Amino Acids

32.7

Weight (kDa)

8.5

Isoelectric Point (pI)

62.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	28 - 117	1.6e-30	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62020
fragaria_vesca	FvH4_7g29190
malus_domestica	MD01G1198700.v1.1 MD07G1266500.v1.1
prunus_persica	Prupe.2G292100_v2.0.a1
pyrus_communis	pycom01g20880 pycom07g24430
rosa_chinensis	RchiOBHm_Chr1g0376961
rosa_laevigata	RLG00000026556
rosa_multiflora	Rmu_ssc0000155.1_g000034
rosa_roxburghii	Rroxscaffold_4G00281590
rosa_rugosa	Rorug01G0399900
rosa_samantha	Rh1AG417100 Rh1BG376500 Rh1CG390300 Rh1DG407200
rosa_wichuraiana	Rw1G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	454
AatII	GACGTC	1 cut(s)	132
AccBSI	CCGCTC	3 cut(s)	144, 667, 786
AccI	GTMKAC	2 cut(s)	56, 108
AccII	CGCG	2 cut(s)	182, 472
AclWI	GGATC	4 cut(s)	107, 147, 160, 771
AcoI	YGGCCR	2 cut(s)	390, 473
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	866
AcyI	GRCGYC	2 cut(s)	77, 129
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	5 cut(s)	48, 471, 620, 623, 788
AgeI	ACCGGT	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	214, 710
AjnI	CCWGG	2 cut(s)	137, 658
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	8 cut(s)	103, 159, 234, 247, 462, 493, 547, 646
AluI	AGCT	8 cut(s)	103, 159, 234, 247, 462, 493, 547, 646
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	3 cut(s)	567, 677, 752
AlwI	GGATC	4 cut(s)	107, 147, 160, 771
AoxI	GGCC	2 cut(s)	390, 473
ApeKI	GCWGC	6 cut(s)	199, 244, 328, 490, 643, 772
ApoI	RAATTY	1 cut(s)	290
AsiGI	ACCGGT	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	698
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	178, 644
BamHI	GGATCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	464
BbvCI	CCTCAGC	1 cut(s)	515
BbvI	GCAGC	6 cut(s)	186, 256, 315, 502, 655, 759
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	6 cut(s)	49, 64, 377, 785, 796, 823
BciT130I	CCWGG	2 cut(s)	139, 660
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	3 cut(s)	567, 677, 752
Bme1390I	CCNGG	3 cut(s)	49, 139, 660
BmiI	GGNNCC	2 cut(s)	6, 154
BmrFI	CCNGG	3 cut(s)	49, 139, 660
BmsI	GCATC	2 cut(s)	645, 835
BplI	GAGNNNNNCTC	4 cut(s)	29, 61, 55, 87
BpmI	CTGGAG	2 cut(s)	160, 214
Bpu10I	CCTNAGC	1 cut(s)	515
BpuMI	CCSGG	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	123
BsaHI	GRCGYC	2 cut(s)	77, 129
BsaJI	CCNNGG	7 cut(s)	48, 470, 476, 540, 585, 659, 839
BsaWI	WCCGGW	2 cut(s)	282, 616
BsaXI	ACNNNNNCTCC	6 cut(s)	212, 242, 545, 566, 575, 596
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 471, 620, 623, 788
Bse118I	RCCGGY	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	139, 660
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	7 cut(s)	48, 470, 476, 540, 585, 659, 839
BseGI	GGATG	1 cut(s)	823
BseLI	CCNNNNNNNGG	5 cut(s)	48, 471, 620, 623, 788
BseMII	CTCAG	3 cut(s)	77, 506, 638
BseRI	GAGGAG	4 cut(s)	452, 454, 515, 770
BseX3I	CGGCCG	2 cut(s)	390, 473
BseXI	GCAGC	6 cut(s)	186, 256, 315, 502, 655, 759
BseYI	CCCAGC	1 cut(s)	678
Bsh1236I	CGCG	2 cut(s)	182, 472
Bsh1285I	CGRYCG	2 cut(s)	393, 476
BshFI	GGCC	2 cut(s)	392, 475
BshTI	ACCGGT	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	123
BsiEI	CGRYCG	2 cut(s)	393, 476
BsiHKAI	GWGCWC	1 cut(s)	464
BslI	CCNNNNNNNGG	5 cut(s)	48, 471, 620, 623, 788
BsmAI	GTCTC	3 cut(s)	567, 677, 752
BsmBI	CGTCTC	2 cut(s)	677, 752
BsnI	GGCC	2 cut(s)	392, 475
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	4 cut(s)	112, 152, 555, 763
Bsp19I	CCATGG	1 cut(s)	585
BspANI	GGCC	2 cut(s)	392, 475
BspCNI	CTCAG	3 cut(s)	78, 507, 639
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	2 cut(s)	182, 472
BspLI	GGNNCC	2 cut(s)	6, 154
BspPI	GGATC	4 cut(s)	107, 147, 160, 771
BsrBI	CCGCTC	3 cut(s)	144, 667, 786
BsrFI	RCCGGY	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	7 cut(s)	48, 470, 476, 540, 585, 659, 839
BssMI	GATC	4 cut(s)	112, 152, 555, 763
BssNI	GRCGYC	2 cut(s)	77, 129
BssT1I	CCWWGG	2 cut(s)	540, 585
Bst2UI	CCWGG	2 cut(s)	139, 660
Bst4CI	ACNGT	1 cut(s)	22
BstACI	GRCGYC	2 cut(s)	77, 129
BstC8I	GCNNGC	2 cut(s)	549, 726
BstDEI	CTNAG	3 cut(s)	86, 515, 647
BstDSI	CCRYGG	3 cut(s)	470, 585, 839
BstF5I	GGATG	1 cut(s)	823
BstFNI	CGCG	2 cut(s)	182, 472
BstKTI	GATC	4 cut(s)	115, 155, 558, 766
BstMAI	GTCTC	3 cut(s)	567, 677, 752
BstMBI	GATC	4 cut(s)	112, 152, 555, 763
BstMCI	CGRYCG	2 cut(s)	393, 476
BstMWI	GCNNNNNNNGC	4 cut(s)	664, 725, 747, 792
BstNI	CCWGG	2 cut(s)	139, 660
BstSCI	CCNGG	3 cut(s)	47, 137, 658
BstUI	CGCG	2 cut(s)	182, 472
BstV1I	GCAGC	6 cut(s)	186, 256, 315, 502, 655, 759
BstX2I	RGATCY	2 cut(s)	152, 763
BstXI	CCANNNNNNTGG	2 cut(s)	163, 547
BstYI	RGATCY	2 cut(s)	152, 763
BstZI	CGGCCG	2 cut(s)	390, 473
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	392, 475
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	3 cut(s)	470, 585, 839
BtgZI	GCGATG	2 cut(s)	118, 765
BtsCI	GGATG	1 cut(s)	823
BtsI	GCAGTG	1 cut(s)	857
BtsIMutI	CAGTG	1 cut(s)	857
Cac8I	GCNNGC	2 cut(s)	549, 726
Cfr10I	RCCGGY	1 cut(s)	282
Cfr42I	CCGCGG	1 cut(s)	473
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	3 cut(s)	67, 85, 649
Csp6I	GTAC	1 cut(s)	97
CspAI	ACCGGT	1 cut(s)	282
CviAII	CATG	1 cut(s)	586
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	3 cut(s)	86, 515, 647
DpnI	GATC	4 cut(s)	114, 154, 557, 765
DpnII	GATC	4 cut(s)	112, 152, 555, 763
DrdI	GACNNNNNNGTC	1 cut(s)	454
DseDI	GACNNNNNNGTC	1 cut(s)	454
EaeI	YGGCCR	2 cut(s)	390, 473
EagI	CGGCCG	2 cut(s)	390, 473
EciI	GGCGGA	2 cut(s)	364, 566
Ecl136II	GAGCTC	1 cut(s)	462
EclXI	CGGCCG	2 cut(s)	390, 473
Eco130I	CCWWGG	2 cut(s)	540, 585
Eco24I	GRGCYC	1 cut(s)	464
Eco52I	CGGCCG	2 cut(s)	390, 473
Eco53kI	GAGCTC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	866
EcoICRI	GAGCTC	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	137, 658
EcoT14I	CCWWGG	2 cut(s)	540, 585
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	2 cut(s)	540, 585
Esp3I	CGTCTC	2 cut(s)	677, 752
FaeI	CATG	1 cut(s)	589
FaiI	YATR	3 cut(s)	275, 341, 587
FatI	CATG	1 cut(s)	585
FauI	CCCGC	1 cut(s)	124
FblI	GTMKAC	2 cut(s)	56, 108
FokI	GGATG	1 cut(s)	830
FriOI	GRGCYC	1 cut(s)	464
GsaI	CCCAGC	1 cut(s)	682
GsuI	CTGGAG	2 cut(s)	160, 214
HaeIII	GGCC	2 cut(s)	392, 475
HgaI	GACGC	3 cut(s)	67, 85, 649
Hin1I	GRCGYC	2 cut(s)	77, 129
Hin1II	CATG	1 cut(s)	589
HincII	GTYRAC	3 cut(s)	57, 109, 639
HindII	GTYRAC	3 cut(s)	57, 109, 639
HinfI	GANTC	4 cut(s)	38, 53, 397, 688
HphI	GGTGA	2 cut(s)	178, 644
Hpy166II	GTNNAC	4 cut(s)	42, 57, 109, 639
Hpy188I	TCNGA	8 cut(s)	75, 87, 267, 693, 716, 808, 817, 870
Hpy188III	TCNNGA	1 cut(s)	830
Hpy8I	GTNNAC	4 cut(s)	42, 57, 109, 639
Hpy99I	CGWCG	7 cut(s)	61, 79, 110, 113, 152, 460, 817
HpyAV	CCTTC	2 cut(s)	514, 731
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	95, 129
HpyF10VI	GCNNNNNNNGC	4 cut(s)	664, 725, 747, 792
HpyF3I	CTNAG	3 cut(s)	86, 515, 647
HpySE526I	ACGT	2 cut(s)	95, 129
Hsp92I	GRCGYC	2 cut(s)	77, 129
Hsp92II	CATG	1 cut(s)	589
KspI	CCGCGG	1 cut(s)	473
Kzo9I	GATC	4 cut(s)	112, 152, 555, 763
Lsp1109I	GCAGC	6 cut(s)	186, 256, 315, 502, 655, 759
LweI	GCATC	2 cut(s)	645, 835
MaeII	ACGT	2 cut(s)	95, 129
MalI	GATC	4 cut(s)	114, 154, 557, 765
MbiI	CCGCTC	3 cut(s)	144, 667, 786
MboI	GATC	4 cut(s)	112, 152, 555, 763
MboII	GAAGA	4 cut(s)	181, 280, 571, 706
MflI	RGATCY	2 cut(s)	152, 763
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	4 cut(s)	290, 354, 595, 880
MlyI	GAGTC	3 cut(s)	47, 62, 697
MmeI	TCCRAC	3 cut(s)	98, 321, 795
MroXI	GAANNNNTTC	1 cut(s)	698
MspA1I	CMGCKG	4 cut(s)	346, 472, 493, 646
MspR9I	CCNGG	3 cut(s)	49, 139, 660
MvaI	CCWGG	2 cut(s)	139, 660
MvnI	CGCG	2 cut(s)	182, 472
MwoI	GCNNNNNNNGC	4 cut(s)	664, 725, 747, 792
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	4 cut(s)	112, 152, 555, 763
NlaIII	CATG	1 cut(s)	589
NlaIV	GGNNCC	2 cut(s)	6, 154
NmeAIII	GCCGAG	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	698
PfeI	GAWTC	1 cut(s)	397
PinAI	ACCGGT	1 cut(s)	282
PleI	GAGTC	3 cut(s)	46, 61, 696
PpsI	GAGTC	3 cut(s)	46, 61, 696
Psp124BI	GAGCTC	1 cut(s)	464
Psp6I	CCWGG	2 cut(s)	137, 658
PspFI	CCCAGC	1 cut(s)	678
PspGI	CCWGG	2 cut(s)	137, 658
PspN4I	GGNNCC	2 cut(s)	6, 154
PsuI	RGATCY	2 cut(s)	152, 763
PvuII	CAGCTG	2 cut(s)	493, 646
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacI	GAGCTC	1 cut(s)	464
SacII	CCGCGG	1 cut(s)	473
SalI	GTCGAC	2 cut(s)	55, 107
Sau3AI	GATC	4 cut(s)	112, 152, 555, 763
SchI	GAGTC	3 cut(s)	47, 62, 697
ScrFI	CCNGG	3 cut(s)	49, 139, 660
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	2 cut(s)	645, 835
Sfr303I	CCGCGG	1 cut(s)	473
SgrBI	CCGCGG	1 cut(s)	473
SgrDI	CGTCGACG	1 cut(s)	107
Sse9I	AATT	4 cut(s)	290, 354, 595, 880
SstI	GAGCTC	1 cut(s)	464
StyD4I	CCNGG	3 cut(s)	47, 137, 658
StyI	CCWWGG	2 cut(s)	540, 585
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	98, 132
TaqI	TCGA	5 cut(s)	56, 108, 123, 458, 593
TasI	AATT	4 cut(s)	290, 354, 595, 880
TauI	GCSGC	6 cut(s)	147, 328, 349, 472, 475, 778
TfiI	GAWTC	1 cut(s)	397
TscAI	CASTG	1 cut(s)	857
TseI	GCWGC	6 cut(s)	199, 244, 328, 490, 643, 772
TspGWI	ACGGA	3 cut(s)	165, 273, 776
TspRI	CASTG	1 cut(s)	857
XapI	RAATTY	1 cut(s)	290
XmiI	GTMKAC	2 cut(s)	56, 108
XmnI	GAANNNNTTC	1 cut(s)	698
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.