Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013887

Physical Location & Seq

Genomic Coordinates Reverse (-)

25155014 .. 25156001

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTCCGACGCCGGTGGAGCCGACCGGCGAGTCCACGTCCGGCGAGTCGTCACAGCGAGCTCTTCCAACTCCGTTTTTGACCAAGACGTATCAGCTCGTCGACGACCCCTCAATCGACGACGTCATCTCATGGAACGACGACGGATCCAGCTTCGTCGTCTGGAACCCCACCGTCTTCGCCAGAGATTTGCTCCCCAAGTACTTCAAGCACAATAACTTCTCCAGCTTCGTACGGCAGCTCAACACTTACGGATTTCGGAAGGTTGTGCCGGACCGATGGGAATTCTTGAACGATAGCTTTCGGAGAGGCGGGAAGCGGCTTCTCTGCGAAATACAACGCCGGAAAATCAACCCTCCGGCGCCGCCGGTGGCGTCGGTTTGGGCGGTTCCGACGGCAAAACCGATGATCTCCCCGTCGAACTCCGGCGACGAGCAGGTGATGTCTTCGAGTTCGTCGCCGATCAGAGCATCGTCGGAGATTATGGACGAGAACGAGAGGCTGAGGAAAGAGAACGTGCAGCTCACCAAGGAGCTGGCGGAGGTCAAGTCCCTCTGCAACAACATCTTCACCATGGTATCGAATTACGCTTGCGCCCAATCGGAGAACGGTTTCCCGGAGCTAAAACCGCTGGATTTGATGCCCGGGAAGCGTTTCTCCGGAAAGAGGAAGAACGAAGAGGAAGAAGAGGCGAGTCCGAAGCTTTTCGGGGTGGTGATTGGGGCCAAGCGCGCGAGAGAGGCCGGCGGCGACGGCGTAGAGAACGATGAGACCGACTTGCGGCTTCAGCGACCGAGTGGTAGCGAGGTTAAATCAGAGCCGTCGGATATTGGTCATAAGGAAACGCCGTGGCTGAAGCAATGCCACATGGCTAAGGGTGTGCAACTGATCAGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

300

Amino Acids

33.35

Weight (kDa)

6.06

Isoelectric Point (pI)

63.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62020
fragaria_vesca	FvH4_7g29190
malus_domestica	MD01G1198700.v1.1 MD07G1266500.v1.1
prunus_persica	Prupe.2G292100_v2.0.a1
pyrus_communis	pycom01g20880 pycom07g24430
rosa_chinensis	RchiOBHm_Chr1g0376961
rosa_laevigata	RLG00000026556
rosa_multiflora	Rmu_ssc0000155.1_g000034
rosa_roxburghii	Rroxscaffold_4G00281590
rosa_rugosa	Rorug01G0399900
rosa_samantha	Rh1AG417100 Rh1BG376500 Rh1CG390300 Rh1DG407200
rosa_wichuraiana	Rw1G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	427
AasI	GACNNNNNNGTC	1 cut(s)	31
AatII	GACGTC	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	2 cut(s)	732, 734
AccIII	TCCGGA	1 cut(s)	659
AciI	CCGC	8 cut(s)	312, 319, 365, 386, 539, 629, 747, 781
AclWI	GGATC	2 cut(s)	141, 154
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	2 cut(s)	770, 875
AcyI	GRCGYC	4 cut(s)	11, 123, 362, 374
AfaI	GTAC	2 cut(s)	203, 234
AfiI	CCNNNNNNNGG	2 cut(s)	666, 780
AgsI	TTSAA	2 cut(s)	208, 292
AjiI	CACGTC	1 cut(s)	39
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	2 cut(s)	141, 154
Ama87I	CYCGRG	1 cut(s)	644
Aor13HI	TCCGGA	1 cut(s)	659
AoxI	GGCC	2 cut(s)	723, 741
ApeKI	GCWGC	2 cut(s)	238, 520
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	3 cut(s)	611, 653, 704
AspLEI	GCGC	4 cut(s)	364, 596, 732, 734
AspS9I	GGNCC	2 cut(s)	274, 723
AsuC2I	CCSGG	3 cut(s)	617, 645, 646
AsuHPI	GGTGA	4 cut(s)	451, 517, 562, 727
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	1 cut(s)	274
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BamHI	GGATCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	64
BbsI	GAAGAC	2 cut(s)	169, 438
Bbv12I	GWGCWC	1 cut(s)	64
BbvCI	CCTCAGC	1 cut(s)	503
BbvI	GCAGC	2 cut(s)	250, 532
BccI	CCATC	1 cut(s)	273
BceAI	ACGGC	5 cut(s)	251, 411, 769, 805, 832
BclI	TGATCA	1 cut(s)	888
BcnI	CCSGG	3 cut(s)	617, 645, 646
BcoDI	GTCTC	1 cut(s)	764
BfoI	RGCGCY	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	427
BisI	GCNGC	6 cut(s)	239, 320, 365, 521, 748, 782
BlsI	GCNGC	6 cut(s)	240, 321, 366, 522, 749, 783
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	3 cut(s)	617, 645, 646
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	644
BmgBI	CACGTC	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	274, 723
BmiI	GGNNCC	7 cut(s)	6, 21, 148, 167, 363, 390, 724
BmrFI	CCNGG	3 cut(s)	617, 645, 646
BmsI	GCATC	2 cut(s)	479, 630
BpiI	GAAGAC	2 cut(s)	169, 438
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
BpmI	CTGGAG	1 cut(s)	208
Bpu10I	CCTNAGC	2 cut(s)	503, 873
BpuMI	CCSGG	3 cut(s)	617, 645, 646
BsaHI	GRCGYC	4 cut(s)	11, 123, 362, 374
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	4 cut(s)	528, 573, 644, 848
BsaWI	WCCGGW	1 cut(s)	659
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	666, 780
Bse118I	RCCGGY	4 cut(s)	13, 26, 367, 743
Bse3DI	GCAATG	1 cut(s)	866
BseAI	TCCGGA	1 cut(s)	659
BseDI	CCNNGG	4 cut(s)	528, 573, 644, 848
BseLI	CCNNNNNNNGG	2 cut(s)	666, 780
BseMI	GCAATG	1 cut(s)	866
BseMII	CTCAG	1 cut(s)	494
BsePI	GCGCGC	1 cut(s)	730
BseXI	GCAGC	2 cut(s)	250, 532
BsgI	GTGCAG	1 cut(s)	539
Bsh1236I	CGCG	2 cut(s)	732, 734
Bsh1285I	CGRYCG	2 cut(s)	27, 794
BshFI	GGCC	2 cut(s)	725, 743
BshNI	GGYRCC	1 cut(s)	361
BsiEI	CGRYCG	2 cut(s)	27, 794
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	644
BsiWI	CGTACG	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	2 cut(s)	666, 780
BsmAI	GTCTC	1 cut(s)	764
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	725, 743
Bso31I	GGTCTC	1 cut(s)	764
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	659
Bsp143I	GATC	4 cut(s)	146, 408, 462, 888
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	8 cut(s)	312, 319, 365, 386, 539, 629, 747, 781
BspANI	GGCC	2 cut(s)	725, 743
BspCNI	CTCAG	1 cut(s)	495
BspEI	TCCGGA	1 cut(s)	659
BspFNI	CGCG	2 cut(s)	732, 734
BspLI	GGNNCC	7 cut(s)	6, 21, 148, 167, 363, 390, 724
BspMI	ACCTGC	1 cut(s)	427
BspPI	GGATC	2 cut(s)	141, 154
BspQI	GCTCTTC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	866
BsrFI	RCCGGY	4 cut(s)	13, 26, 367, 743
BssAI	RCCGGY	4 cut(s)	13, 26, 367, 743
BssECI	CCNNGG	4 cut(s)	528, 573, 644, 848
BssHII	GCGCGC	1 cut(s)	730
BssMI	GATC	4 cut(s)	146, 408, 462, 888
BssNI	GRCGYC	4 cut(s)	11, 123, 362, 374
BssT1I	CCWWGG	2 cut(s)	528, 573
Bst4CI	ACNGT	2 cut(s)	175, 611
Bst6I	CTCTTC	3 cut(s)	69, 672, 681
BstACI	GRCGYC	4 cut(s)	11, 123, 362, 374
BstC8I	GCNNGC	5 cut(s)	60, 537, 592, 732, 745
BstDEI	CTNAG	2 cut(s)	503, 873
BstDSI	CCRYGG	2 cut(s)	573, 848
BstFNI	CGCG	2 cut(s)	732, 734
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	4 cut(s)	364, 596, 732, 734
BstKTI	GATC	4 cut(s)	149, 411, 465, 891
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	4 cut(s)	146, 408, 462, 888
BstMCI	CGRYCG	2 cut(s)	27, 794
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 628, 649, 731, 740, 753, 787
BstSCI	CCNGG	3 cut(s)	615, 643, 644
BstUI	CGCG	2 cut(s)	732, 734
BstV1I	GCAGC	2 cut(s)	250, 532
BstV2I	GAAGAC	2 cut(s)	169, 438
BstX2I	RGATCY	1 cut(s)	146
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	725, 743
BtgI	CCRYGG	2 cut(s)	573, 848
BtrI	CACGTC	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	5 cut(s)	60, 537, 592, 732, 745
CfoI	GCGC	4 cut(s)	364, 596, 732, 734
Cfr10I	RCCGGY	4 cut(s)	13, 26, 367, 743
Cfr13I	GGNCC	2 cut(s)	274, 723
Cfr9I	CCCGGG	1 cut(s)	644
CpoI	CGGWCCG	1 cut(s)	274
CseI	GACGC	2 cut(s)	19, 363
Csp6I	GTAC	2 cut(s)	202, 233
CspI	CGGWCCG	1 cut(s)	274
CviAII	CATG	3 cut(s)	132, 574, 868
CviQI	GTAC	2 cut(s)	202, 233
DdeI	CTNAG	2 cut(s)	503, 873
DinI	GGCGCC	1 cut(s)	363
DpnI	GATC	4 cut(s)	148, 410, 464, 890
DpnII	GATC	4 cut(s)	146, 408, 462, 888
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
Eam1104I	CTCTTC	3 cut(s)	69, 672, 681
EarI	CTCTTC	3 cut(s)	69, 672, 681
EciI	GGCGGA	1 cut(s)	554
Ecl136II	GAGCTC	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	528, 573
Eco24I	GRGCYC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	764
Eco47I	GGWCC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	62
Eco57I	CTGAAG	2 cut(s)	770, 875
Eco88I	CYCGRG	1 cut(s)	644
EcoICRI	GAGCTC	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	528, 573
EcoT38I	GRGCYC	1 cut(s)	64
EgeI	GGCGCC	1 cut(s)	363
EheI	GGCGCC	1 cut(s)	363
ErhI	CCWWGG	2 cut(s)	528, 573
FaeI	CATG	3 cut(s)	135, 577, 871
FaiI	YATR	5 cut(s)	133, 485, 575, 837, 869
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	3 cut(s)	131, 573, 867
FauI	CCCGC	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	888
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	6 cut(s)	239, 320, 365, 521, 748, 782
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	6 cut(s)	239, 320, 365, 521, 748, 782
GlaI	GCGC	4 cut(s)	363, 595, 731, 733
GluI	GCNGC	6 cut(s)	239, 320, 365, 521, 748, 782
GsuI	CTGGAG	1 cut(s)	208
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	725, 743
HgaI	GACGC	2 cut(s)	19, 363
HhaI	GCGC	4 cut(s)	364, 596, 732, 734
Hin1I	GRCGYC	4 cut(s)	11, 123, 362, 374
Hin1II	CATG	3 cut(s)	135, 577, 871
Hin6I	GCGC	4 cut(s)	362, 594, 730, 732
HinP1I	GCGC	4 cut(s)	362, 594, 730, 732
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	3 cut(s)	32, 47, 694
HphI	GGTGA	4 cut(s)	451, 517, 562, 727
Hpy166II	GTNNAC	2 cut(s)	36, 103
Hpy188III	TCNNGA	3 cut(s)	163, 289, 660
Hpy8I	GTNNAC	2 cut(s)	36, 103
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	175, 611
HpyCH4IV	ACGT	4 cut(s)	38, 89, 123, 516
HpyCH4V	TGCA	3 cut(s)	520, 558, 883
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 628, 649, 731, 740, 753, 787
HpyF3I	CTNAG	2 cut(s)	503, 873
HpySE526I	ACGT	4 cut(s)	38, 89, 123, 516
Hsp92I	GRCGYC	4 cut(s)	11, 123, 362, 374
Hsp92II	CATG	3 cut(s)	135, 577, 871
HspAI	GCGC	4 cut(s)	362, 594, 730, 732
KasI	GGCGCC	1 cut(s)	361
Kpn2I	TCCGGA	1 cut(s)	659
KroI	GCCGGC	1 cut(s)	743
KroNI	GCCGGC	1 cut(s)	745
Ksp22I	TGATCA	1 cut(s)	888
Kzo9I	GATC	4 cut(s)	146, 408, 462, 888
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	5 cut(s)	10, 19, 198, 532, 619
Lsp1109I	GCAGC	2 cut(s)	250, 532
LweI	GCATC	2 cut(s)	479, 630
MaeII	ACGT	4 cut(s)	38, 89, 123, 516
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	4 cut(s)	148, 410, 464, 890
MboI	GATC	4 cut(s)	146, 408, 462, 888
MboII	GAAGA	8 cut(s)	56, 169, 438, 559, 682, 689, 695, 698
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	2 cut(s)	284, 583
Mly113I	GGCGCC	1 cut(s)	362
MlyI	GAGTC	3 cut(s)	41, 56, 703
MmeI	TCCRAC	5 cut(s)	32, 92, 416, 456, 804
MroI	TCCGGA	1 cut(s)	659
MroNI	GCCGGC	1 cut(s)	743
MroXI	GAANNNNTTC	3 cut(s)	611, 653, 704
MseI	TTAA	1 cut(s)	810
MspA1I	CMGCKG	1 cut(s)	631
MspR9I	CCNGG	3 cut(s)	617, 645, 646
MvnI	CGCG	2 cut(s)	732, 734
MwoI	GCNNNNNNNGC	7 cut(s)	19, 628, 649, 731, 740, 753, 787
NaeI	GCCGGC	1 cut(s)	745
NarI	GGCGCC	1 cut(s)	362
NciI	CCSGG	3 cut(s)	617, 645, 646
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	4 cut(s)	146, 408, 462, 888
NgoMIV	GCCGGC	1 cut(s)	743
NlaIII	CATG	3 cut(s)	135, 577, 871
NlaIV	GGNNCC	7 cut(s)	6, 21, 148, 167, 363, 390, 724
NmuCI	GTSAC	1 cut(s)	51
PaqCI	CACCTGC	1 cut(s)	427
PauI	GCGCGC	1 cut(s)	730
PciSI	GCTCTTC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	2 cut(s)	401, 771
PdiI	GCCGGC	1 cut(s)	745
PdmI	GAANNNNTTC	3 cut(s)	611, 653, 704
Pfl23II	CGTACG	1 cut(s)	232
PflFI	GACNNNGTC	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	615
PkrI	GCNGC	6 cut(s)	240, 321, 366, 522, 749, 783
PleI	GAGTC	3 cut(s)	40, 55, 702
PluTI	GGCGCC	1 cut(s)	365
PpsI	GAGTC	3 cut(s)	40, 55, 702
Psp124BI	GAGCTC	1 cut(s)	64
PspLI	CGTACG	1 cut(s)	232
PspN4I	GGNNCC	7 cut(s)	6, 21, 148, 167, 363, 390, 724
PspPI	GGNCC	2 cut(s)	274, 723
PsuI	RGATCY	1 cut(s)	146
PsyI	GACNNNGTC	1 cut(s)	122
PteI	GCGCGC	1 cut(s)	730
RsaI	GTAC	2 cut(s)	203, 234
RsaNI	GTAC	2 cut(s)	202, 233
Rsr2I	CGGWCCG	1 cut(s)	274
RsrII	CGGWCCG	1 cut(s)	274
SacI	GAGCTC	1 cut(s)	64
SalI	GTCGAC	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	810
SatI	GCNGC	6 cut(s)	239, 320, 365, 521, 748, 782
Sau3AI	GATC	4 cut(s)	146, 408, 462, 888
Sau96I	GGNCC	2 cut(s)	274, 723
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	3 cut(s)	41, 56, 703
ScrFI	CCNGG	3 cut(s)	617, 645, 646
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	2 cut(s)	479, 630
SfoI	GGCGCC	1 cut(s)	363
SgrAI	CRCCGGYG	2 cut(s)	13, 367
SgrDI	CGTCGACG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	274
SmaI	CCCGGG	1 cut(s)	646
Sse9I	AATT	2 cut(s)	284, 583
SsiI	CCGC	8 cut(s)	312, 319, 365, 386, 539, 629, 747, 781
SspDI	GGCGCC	1 cut(s)	361
SstI	GAGCTC	1 cut(s)	64
StyD4I	CCNGG	3 cut(s)	615, 643, 644
StyI	CCWWGG	2 cut(s)	528, 573
TaaI	ACNGT	2 cut(s)	175, 611
TaiI	ACGT	4 cut(s)	41, 92, 126, 519
TaqI	TCGA	5 cut(s)	102, 117, 419, 449, 581
TaqII	GACCGA	3 cut(s)	291, 788, 808
TasI	AATT	2 cut(s)	284, 583
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	4 cut(s)	322, 367, 750, 784
Tru1I	TTAA	1 cut(s)	810
Tru9I	TTAA	1 cut(s)	810
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	2 cut(s)	238, 520
Tsp45I	GTSAC	1 cut(s)	51
TspGWI	ACGGA	3 cut(s)	63, 159, 267
TspMI	CCCGGG	1 cut(s)	644
Tth111I	GACNNNGTC	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	284
XmaI	CCCGGG	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	3 cut(s)	611, 653, 704
ZraI	GACGTC	1 cut(s)	124
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.