Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0013887

Physical Location & Seq

Genomic Coordinates Reverse (-)

65918705 .. 65920711

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG390300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTTGTTATGGCTCCTCCTCCGCCTACGGTGGAGCAGAACGGCGAGTCCACCTCCGGCGAGTCGACGCAGCGAGGCTCTCCGACGCCGTTTCTGAGCAAAACGTACCAGCTCGTCGACGATCCCGCCATCGATGACGTCATCGCCTGGAGCGGCGACGGATCCAGCTTCGTGGTGAAGAACCCCACCGTGTTCGCCAGAGATTTGCTGCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAACACCTACGGATTTCGGAAGATCATACCTGACCGGTGGGAATTCTCCAACGACTGCTTCCGCAGAGGCGAGAAGCGGCTGCTCTGCGACATACAGCGGCGGAGAATTATGCCTCCGGCGGTTTCTCCGGCCGTGATTCCGGCGAAACCTATCACCTCTCCGGCGAACTCCGGCGAGGAGCAGATGACTACTTCGTCGAGCTCCTCGCCGCGGCCGAGGATTCCGTGGCAGCTGGTGGAGGAGAACGAGAGGCTGAGGAAGGAGAACCTCCGGCTGACCAAGGAGCTGGCGGAGATCAAGTCTCTCTGCCACAACATCTTCTCCCTGGTGTCGAATTACGCCTGTAATAAGCCACCGGAGGGCGGTTTAGGTGAGTTGACGCAGCTAAGTTTGATGCCCGGGGAGCGGTTTTCCGGCGGGGAGACGAGTCAGAAGATTTTCGGGGTGGAAATCGGAGCGAAGCGGGCGAGGGAGGAAGGCGGTGAGGAGACGGATCTACGGCTGCGGCAACCGAGCGGTGGTGGCGGTGTGAAATCAGAGCCTTCGGATGTGGAGCATCGTGAGAAGCCGTGGCTGAAGCAGTGCCACAGGGCTAATCAGAGGGTGTGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

290

Amino Acids

32.43

Weight (kDa)

8.71

Isoelectric Point (pI)

62.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	31 - 120	3.7e-30	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62020
fragaria_vesca	FvH4_7g29190
malus_domestica	MD01G1198700.v1.1 MD07G1266500.v1.1
prunus_persica	Prupe.2G292100_v2.0.a1
pyrus_communis	pycom01g20880 pycom07g24430
rosa_chinensis	RchiOBHm_Chr1g0376961
rosa_laevigata	RLG00000026556
rosa_multiflora	Rmu_ssc0000155.1_g000034
rosa_roxburghii	Rroxscaffold_4G00281590
rosa_rugosa	Rorug01G0399900
rosa_samantha	Rh1AG417100 Rh1BG376500 Rh1CG390300 Rh1DG407200
rosa_wichuraiana	Rw1G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	451
AatII	GACGTC	1 cut(s)	141
AccBSI	CCGCTC	3 cut(s)	153, 664, 774
AccI	GTMKAC	2 cut(s)	65, 117
AccII	CGCG	1 cut(s)	469
AclWI	GGATC	4 cut(s)	116, 156, 169, 759
AcoI	YGGCCR	2 cut(s)	387, 470
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	854
AcyI	GRCGYC	2 cut(s)	86, 138
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	5 cut(s)	468, 617, 620, 663, 776
AgeI	ACCGGT	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	146, 582
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	8 cut(s)	112, 168, 243, 256, 459, 490, 544, 643
AluI	AGCT	8 cut(s)	112, 168, 243, 256, 459, 490, 544, 643
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	3 cut(s)	564, 674, 740
AlwI	GGATC	4 cut(s)	116, 156, 169, 759
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	2 cut(s)	387, 470
ApeKI	GCWGC	7 cut(s)	70, 208, 253, 337, 487, 640, 760
ApoI	RAATTY	1 cut(s)	299
AsiGI	ACCGGT	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	695
AsuC2I	CCSGG	2 cut(s)	657, 658
AsuHPI	GGTGA	4 cut(s)	187, 403, 641, 752
AvaI	CYCGRG	1 cut(s)	656
BamHI	GGATCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	461
BbvCI	CCTCAGC	1 cut(s)	512
BbvI	GCAGC	7 cut(s)	82, 195, 265, 324, 499, 652, 747
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	5 cut(s)	58, 73, 374, 773, 811
BciT130I	CCWGG	2 cut(s)	148, 584
BcnI	CCSGG	2 cut(s)	657, 658
BcoDI	GTCTC	3 cut(s)	564, 674, 740
Bme1390I	CCNGG	4 cut(s)	148, 584, 657, 658
BmeT110I	CYCGRG	1 cut(s)	656
BmiI	GGNNCC	2 cut(s)	15, 163
BmrFI	CCNGG	4 cut(s)	148, 584, 657, 658
BmsI	GCATC	2 cut(s)	642, 823
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpmI	CTGGAG	2 cut(s)	169, 223
Bpu10I	CCTNAGC	1 cut(s)	512
BpuMI	CCSGG	2 cut(s)	657, 658
Bsa29I	ATCGAT	1 cut(s)	132
BsaHI	GRCGYC	2 cut(s)	86, 138
BsaJI	CCNNGG	8 cut(s)	467, 473, 482, 537, 582, 656, 657, 827
BsaWI	WCCGGW	2 cut(s)	291, 613
BsaXI	ACNNNNNCTCC	6 cut(s)	221, 251, 542, 563, 572, 593
Bsc4I	CCNNNNNNNGG	5 cut(s)	468, 617, 620, 663, 776
Bse118I	RCCGGY	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	148, 584
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	8 cut(s)	467, 473, 482, 537, 582, 656, 657, 827
BseGI	GGATG	1 cut(s)	811
BseLI	CCNNNNNNNGG	5 cut(s)	468, 617, 620, 663, 776
BseMII	CTCAG	2 cut(s)	86, 503
BseRI	GAGGAG	6 cut(s)	6, 9, 449, 451, 512, 758
BseX3I	CGGCCG	2 cut(s)	387, 470
BseXI	GCAGC	7 cut(s)	82, 195, 265, 324, 499, 652, 747
Bsh1236I	CGCG	1 cut(s)	469
Bsh1285I	CGRYCG	2 cut(s)	390, 473
BshFI	GGCC	2 cut(s)	389, 472
BshTI	ACCGGT	1 cut(s)	291
BshVI	ATCGAT	1 cut(s)	132
BsiEI	CGRYCG	2 cut(s)	390, 473
BsiHKAI	GWGCWC	1 cut(s)	461
BsiHKCI	CYCGRG	1 cut(s)	656
BslI	CCNNNNNNNGG	5 cut(s)	468, 617, 620, 663, 776
BsmAI	GTCTC	3 cut(s)	564, 674, 740
BsmBI	CGTCTC	2 cut(s)	674, 740
BsnI	GGCC	2 cut(s)	389, 472
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	5 cut(s)	121, 161, 279, 552, 751
BspANI	GGCC	2 cut(s)	389, 472
BspCNI	CTCAG	2 cut(s)	87, 504
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	15, 163
BspPI	GGATC	4 cut(s)	116, 156, 169, 759
BsrBI	CCGCTC	3 cut(s)	153, 664, 774
BsrFI	RCCGGY	1 cut(s)	291
BssAI	RCCGGY	1 cut(s)	291
BssECI	CCNNGG	8 cut(s)	467, 473, 482, 537, 582, 656, 657, 827
BssMI	GATC	5 cut(s)	121, 161, 279, 552, 751
BssNI	GRCGYC	2 cut(s)	86, 138
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	2 cut(s)	148, 584
Bst4CI	ACNGT	2 cut(s)	31, 190
BstACI	GRCGYC	2 cut(s)	86, 138
BstC8I	GCNNGC	2 cut(s)	546, 723
BstDEI	CTNAG	3 cut(s)	95, 512, 644
BstDSI	CCRYGG	3 cut(s)	467, 482, 827
BstF5I	GGATG	1 cut(s)	811
BstFNI	CGCG	1 cut(s)	469
BstKTI	GATC	5 cut(s)	124, 164, 282, 555, 754
BstMAI	GTCTC	3 cut(s)	564, 674, 740
BstMBI	GATC	5 cut(s)	121, 161, 279, 552, 751
BstMCI	CGRYCG	2 cut(s)	390, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	661, 722, 780
BstNI	CCWGG	2 cut(s)	148, 584
BstSCI	CCNGG	4 cut(s)	146, 582, 655, 656
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	7 cut(s)	82, 195, 265, 324, 499, 652, 747
BstX2I	RGATCY	2 cut(s)	161, 751
BstXI	CCANNNNNNTGG	2 cut(s)	172, 544
BstYI	RGATCY	2 cut(s)	161, 751
BstZI	CGGCCG	2 cut(s)	387, 470
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	389, 472
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	3 cut(s)	467, 482, 827
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	811
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	1 cut(s)	845
Cac8I	GCNNGC	2 cut(s)	546, 723
Cfr10I	RCCGGY	1 cut(s)	291
Cfr42I	CCGCGG	1 cut(s)	470
Cfr9I	CCCGGG	1 cut(s)	656
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	3 cut(s)	76, 94, 646
Csp6I	GTAC	1 cut(s)	106
CspAI	ACCGGT	1 cut(s)	291
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	3 cut(s)	95, 512, 644
DpnI	GATC	5 cut(s)	123, 163, 281, 554, 753
DpnII	GATC	5 cut(s)	121, 161, 279, 552, 751
DrdI	GACNNNNNNGTC	1 cut(s)	451
DseDI	GACNNNNNNGTC	1 cut(s)	451
EaeI	YGGCCR	2 cut(s)	387, 470
EagI	CGGCCG	2 cut(s)	387, 470
EciI	GGCGGA	3 cut(s)	12, 373, 563
Ecl136II	GAGCTC	1 cut(s)	459
EclXI	CGGCCG	2 cut(s)	387, 470
Eco130I	CCWWGG	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	461
Eco52I	CGGCCG	2 cut(s)	387, 470
Eco53kI	GAGCTC	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	854
Eco88I	CYCGRG	1 cut(s)	656
EcoICRI	GAGCTC	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	146, 582
EcoT14I	CCWWGG	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	461
ErhI	CCWWGG	1 cut(s)	537
Esp3I	CGTCTC	2 cut(s)	674, 740
FaiI	YATR	4 cut(s)	11, 284, 350, 368
FauI	CCCGC	3 cut(s)	133, 668, 714
FblI	GTMKAC	2 cut(s)	65, 117
FokI	GGATG	1 cut(s)	818
FriOI	GRGCYC	1 cut(s)	461
GsuI	CTGGAG	2 cut(s)	169, 223
HaeIII	GGCC	2 cut(s)	389, 472
HgaI	GACGC	3 cut(s)	76, 94, 646
Hin1I	GRCGYC	2 cut(s)	86, 138
HincII	GTYRAC	3 cut(s)	66, 118, 636
HindII	GTYRAC	3 cut(s)	66, 118, 636
HinfI	GANTC	5 cut(s)	47, 62, 394, 478, 685
HphI	GGTGA	4 cut(s)	187, 403, 641, 752
Hpy166II	GTNNAC	4 cut(s)	51, 66, 118, 636
Hpy188I	TCNGA	8 cut(s)	84, 96, 276, 690, 713, 796, 805, 858
Hpy188III	TCNNGA	1 cut(s)	818
Hpy8I	GTNNAC	4 cut(s)	51, 66, 118, 636
Hpy99I	CGWCG	6 cut(s)	70, 88, 119, 122, 161, 457
HpyAV	CCTTC	3 cut(s)	511, 728, 810
HpyCH4III	ACNGT	2 cut(s)	31, 190
HpyCH4IV	ACGT	2 cut(s)	104, 138
HpyF10VI	GCNNNNNNNGC	3 cut(s)	661, 722, 780
HpyF3I	CTNAG	3 cut(s)	95, 512, 644
HpySE526I	ACGT	2 cut(s)	104, 138
Hsp92I	GRCGYC	2 cut(s)	86, 138
KspI	CCGCGG	1 cut(s)	470
Kzo9I	GATC	5 cut(s)	121, 161, 279, 552, 751
LmnI	GCTCC	9 cut(s)	19, 34, 150, 436, 464, 541, 661, 713, 811
Lsp1109I	GCAGC	7 cut(s)	82, 195, 265, 324, 499, 652, 747
LweI	GCATC	2 cut(s)	642, 823
MaeII	ACGT	2 cut(s)	104, 138
MalI	GATC	5 cut(s)	123, 163, 281, 554, 753
MbiI	CCGCTC	3 cut(s)	153, 664, 774
MboI	GATC	5 cut(s)	121, 161, 279, 552, 751
MboII	GAAGA	4 cut(s)	190, 289, 568, 703
MflI	RGATCY	2 cut(s)	161, 751
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	4 cut(s)	299, 363, 592, 868
MlyI	GAGTC	3 cut(s)	56, 71, 694
MmeI	TCCRAC	2 cut(s)	107, 330
MroXI	GAANNNNTTC	1 cut(s)	695
MspA1I	CMGCKG	3 cut(s)	355, 469, 490
MspR9I	CCNGG	4 cut(s)	148, 584, 657, 658
MvaI	CCWGG	2 cut(s)	148, 584
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	3 cut(s)	661, 722, 780
NciI	CCSGG	2 cut(s)	657, 658
NdeII	GATC	5 cut(s)	121, 161, 279, 552, 751
NlaIV	GGNNCC	2 cut(s)	15, 163
NmeAIII	GCCGAG	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	695
PfeI	GAWTC	2 cut(s)	394, 478
PinAI	ACCGGT	1 cut(s)	291
PleI	GAGTC	3 cut(s)	55, 70, 693
PpsI	GAGTC	3 cut(s)	55, 70, 693
Psp124BI	GAGCTC	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	146, 582
PspGI	CCWGG	2 cut(s)	146, 582
PspN4I	GGNNCC	2 cut(s)	15, 163
PsuI	RGATCY	2 cut(s)	161, 751
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	461
SacII	CCGCGG	1 cut(s)	470
SalI	GTCGAC	2 cut(s)	64, 116
Sau3AI	GATC	5 cut(s)	121, 161, 279, 552, 751
SchI	GAGTC	3 cut(s)	56, 71, 694
ScrFI	CCNGG	4 cut(s)	148, 584, 657, 658
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	2 cut(s)	642, 823
Sfr303I	CCGCGG	1 cut(s)	470
SgrBI	CCGCGG	1 cut(s)	470
SgrDI	CGTCGACG	1 cut(s)	116
SmaI	CCCGGG	1 cut(s)	658
Sse9I	AATT	4 cut(s)	299, 363, 592, 868
SstI	GAGCTC	1 cut(s)	461
StyD4I	CCNGG	4 cut(s)	146, 582, 655, 656
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	2 cut(s)	31, 190
TaiI	ACGT	2 cut(s)	107, 141
TaqI	TCGA	5 cut(s)	65, 117, 132, 455, 590
TasI	AATT	4 cut(s)	299, 363, 592, 868
TauI	GCSGC	6 cut(s)	156, 337, 358, 469, 472, 766
TfiI	GAWTC	2 cut(s)	394, 478
TscAI	CASTG	1 cut(s)	845
TseI	GCWGC	7 cut(s)	70, 208, 253, 337, 487, 640, 760
TspGWI	ACGGA	4 cut(s)	174, 282, 471, 764
TspMI	CCCGGG	1 cut(s)	656
TspRI	CASTG	1 cut(s)	845
XapI	RAATTY	1 cut(s)	299
XmaI	CCCGGG	1 cut(s)	656
XmiI	GTMKAC	2 cut(s)	65, 117
XmnI	GAANNNNTTC	1 cut(s)	695
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.