AT5G62980

Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007343
Physical Location & Seq
Forward (+)
25276017 .. 25277293
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62980.2

Sequence Viewer

Length: 396 bp
ATGGAGAAAGACATGGCAATGATGGGAGACAAACTGATACTGAGAGGCTTGAAATTTTATGGTTTCCATGGAGCTATTCCTGAAGAGAAGACGCTTGGCCAGATGTTTATGCTTGACATCGATGCTTGGATGTGTCTCAAAAAGGCTGGTCTATCAGACAACTTAGCTGATTCTGTCAGCTATGTCGACATTTACAACGTGGCAAAGGAAGTTGTAGAAGGGTCATCAAGAAACCTTCTGGAGAGAGTTGCAGGACTTATAGCTTCCAAAACTCTGGAAATATCCCCTCGGATAACAGCTGTTCGAGTGAAGCTATGGAAGCCAAATGTTGCGCTTATTCAAAGCACTATCGATTATTTAGGTGTCGAGATTTTCAGAGATCGCGCAACTGAATAA

Protein Analysis

131

Amino Acids

14.69

Weight (kDa)

5.88

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FolB PF02152 13 - 124 2.9e-29 Dihydroneopterin aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 102
AgsI TTSAA 2 cut(s) 52, 341
AluBI AGCT 6 cut(s) 74, 167, 180, 263, 299, 313
AluI AGCT 6 cut(s) 74, 167, 180, 263, 299, 313
Alw26I GTCTC 2 cut(s) 21, 140
AoxI GGCC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 53
AspLEI GCGC 2 cut(s) 334, 386
BalI TGGCCA 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 95
BccI CCATC 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 21, 140
BmsI GCATC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 260
Bsa29I ATCGAT 2 cut(s) 120, 351
BsaJI CCNNGG 2 cut(s) 67, 287
Bse3DI GCAATG 1 cut(s) 24
BseCI ATCGAT 2 cut(s) 120, 351
BseDI CCNNGG 2 cut(s) 67, 287
BseGI GGATG 1 cut(s) 135
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 1 cut(s) 99
BshVI ATCGAT 2 cut(s) 120, 351
BsmAI GTCTC 2 cut(s) 21, 140
BsnI GGCC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 379
Bsp19I CCATGG 1 cut(s) 67
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 33
BspDI ATCGAT 2 cut(s) 120, 351
BspFNI CGCG 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 67, 287
BssMI GATC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 41, 163
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 384
BstHHI GCGC 2 cut(s) 334, 386
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 2 cut(s) 21, 140
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstUI CGCG 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 274
Bsu15I ATCGAT 2 cut(s) 120, 351
BsuRI GGCC 1 cut(s) 99
BsuTUI ATCGAT 2 cut(s) 120, 351
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 135
CfoI GCGC 2 cut(s) 334, 386
ClaI ATCGAT 2 cut(s) 120, 351
CseI GACGC 1 cut(s) 100
CviAII CATG 2 cut(s) 13, 68
DdeI CTNAG 2 cut(s) 41, 163
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 2 cut(s) 16, 71
FaiI YATR 7 cut(s) 14, 60, 69, 110, 183, 260, 316
FatI CATG 2 cut(s) 12, 67
FblI GTMKAC 1 cut(s) 186
FokI GGATG 1 cut(s) 142
GlaI GCGC 2 cut(s) 333, 385
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 1 cut(s) 99
HgaI GACGC 1 cut(s) 100
HhaI GCGC 2 cut(s) 334, 386
Hin1II CATG 2 cut(s) 16, 71
Hin6I GCGC 2 cut(s) 332, 384
HinP1I GCGC 2 cut(s) 332, 384
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 157, 291, 377
Hpy188III TCNNGA 5 cut(s) 80, 228, 239, 275, 367
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 212, 245
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
HpyF3I CTNAG 2 cut(s) 41, 163
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 2 cut(s) 16, 71
HspAI GCGC 2 cut(s) 332, 384
Kzo9I GATC 1 cut(s) 379
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 6 cut(s) 93, 113, 132, 224, 237, 260
LweI GCATC 1 cut(s) 112
MaeII ACGT 1 cut(s) 198
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 2 cut(s) 95, 100
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 1 cut(s) 53
MluNI TGGCCA 1 cut(s) 99
MnlI CCTC 2 cut(s) 38, 297
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 299
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 319
NcoI CCATGG 1 cut(s) 67
NdeII GATC 1 cut(s) 379
NlaIII CATG 2 cut(s) 16, 71
PfeI GAWTC 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 17
SalI GTCGAC 1 cut(s) 185
Sau3AI GATC 1 cut(s) 379
SetI ASST 9 cut(s) 76, 169, 182, 201, 237, 265, 301, 315, 364
SfaNI GCATC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse9I AATT 1 cut(s) 53
StyI CCWWGG 1 cut(s) 67
TaiI ACGT 1 cut(s) 201
TaqI TCGA 5 cut(s) 120, 186, 304, 351, 366
TasI AATT 1 cut(s) 53
TfiI GAWTC 1 cut(s) 170
XapI RAATTY 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.