Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035333.1

Orthogroup ID

OG0007343

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1632

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035333.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 446 bp

gtctcagtataataccaatggctgcttctgtgactggaacagcacatgaagatgctgcaattagagggggagataagcttgtactaaagggtttgaagttccatggtttccatggggtgaagccagaagagaggaagttgggtcagaagtttctgatagatgttgatgcttggatggatcttcgggtggctggaagatctgatcagttgtcagacaccattagctacaccgaaatttatcgcattgtaaaagaggttgtagaagggccacctcataatcttctggagtctgttgctgaactcattgcatctaccactctgaaaaactatccccagatatctgctgtctctgtgaaagttggaaagcctcacgttgctgctcatggtcctcttgattacttgggcgttgagatatttagatacaggagtattgatgcaccgaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004150 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016829 GO:0016830 GO:0016832 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

FolB

Protein Analysis

147

Amino Acids

16.07

Weight (kDa)

6.65

Isoelectric Point (pI)

17.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11750 AT5G62980 AT5G62980
fragaria_vesca	FvH4_6g20690
malus_domestica	MD12G1043200.v1.1 MD14G1042300.v1.1
prunus_persica	Prupe.7G091600_v2.0.a1 Prupe.7G091600_v2.0.a1 Prupe.7G091600_v2.0.a1
pyrus_communis	pycom12g03730 pycom14g03600
rosa_chinensis	RchiOBHm_Chr3g0476591
rosa_laevigata	RLG00000001983 RLG00000023760
rosa_multiflora	Rmu_sc0035333.1_g000001 Rmu_sc0041981.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405180
rosa_rugosa	Rorug03G0155500
rosa_samantha	Rh3AG206100 Rh3BG238700 Rh3CG232400 Rh3DG232300 Rh7DG310000
rosa_wichuraiana	Rw3G018770 Rw7G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	233
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	2 cut(s)	78, 224
AluI	AGCT	2 cut(s)	78, 224
Alw26I	GTCTC	2 cut(s)	7, 351
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	3 cut(s)	22, 55, 376
ApoI	RAATTY	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	265, 385
AsuHPI	GGTGA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	385
BaeI	ACNNNNGTAYC	2 cut(s)	411, 444
BbvI	GCAGC	3 cut(s)	9, 42, 363
BccI	CCATC	1 cut(s)	168
BclI	TGATCA	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	7, 351
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	3 cut(s)	23, 56, 377
BlsI	GCNGC	3 cut(s)	24, 57, 378
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	265, 385
BmsI	GCATC	4 cut(s)	42, 156, 316, 423
BpmI	CTGGAG	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	102, 111
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	102, 111
BseGI	GGATG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	3 cut(s)	9, 42, 363
BshFI	GGCC	1 cut(s)	267
BsmAI	GTCTC	2 cut(s)	7, 351
BsnI	GGCC	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	177, 196, 201
Bsp19I	CCATGG	2 cut(s)	102, 111
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	17
BspPI	GGATC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	102, 111
BssMI	GATC	3 cut(s)	177, 196, 201
BssT1I	CCWWGG	2 cut(s)	102, 111
Bst6I	CTCTTC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	4
BstDSI	CCRYGG	2 cut(s)	102, 111
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	3 cut(s)	180, 199, 204
BstMAI	GTCTC	2 cut(s)	7, 351
BstMBI	GATC	3 cut(s)	177, 196, 201
BstV1I	GCAGC	3 cut(s)	9, 42, 363
BstX2I	RGATCY	2 cut(s)	177, 196
BstYI	RGATCY	2 cut(s)	177, 196
BsuRI	GGCC	1 cut(s)	267
BtgI	CCRYGG	2 cut(s)	102, 111
BtsCI	GGATG	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	265, 385
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	4 cut(s)	46, 103, 112, 382
CviJI	RGCY	7 cut(s)	22, 78, 123, 190, 224, 267, 366
CviKI_1	RGCY	7 cut(s)	22, 78, 123, 190, 224, 267, 366
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	4
DpnI	GATC	3 cut(s)	179, 198, 203
DpnII	GATC	3 cut(s)	177, 196, 201
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	102, 111
Eco32I	GATATC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	385
EcoRV	GATATC	1 cut(s)	338
EcoT14I	CCWWGG	2 cut(s)	102, 111
ErhI	CCWWGG	2 cut(s)	102, 111
FaeI	CATG	4 cut(s)	49, 106, 115, 385
FaiI	YATR	6 cut(s)	10, 47, 104, 113, 275, 383
FatI	CATG	4 cut(s)	45, 102, 111, 381
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	23, 56, 377
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	3 cut(s)	23, 56, 377
GluI	GCNGC	3 cut(s)	23, 56, 377
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	1 cut(s)	267
Hin1II	CATG	4 cut(s)	49, 106, 115, 385
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	1 cut(s)	286
HphI	GGTGA	1 cut(s)	129
Hpy188I	TCNGA	5 cut(s)	146, 155, 201, 213, 320
Hpy188III	TCNNGA	2 cut(s)	283, 391
HpyAV	CCTTC	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	3 cut(s)	58, 307, 436
HpyF3I	CTNAG	1 cut(s)	4
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	4 cut(s)	49, 106, 115, 385
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	177, 196, 201
LpnPI	CCDG	6 cut(s)	20, 137, 176, 268, 346, 408
Lsp1109I	GCAGC	3 cut(s)	9, 42, 363
LweI	GCATC	4 cut(s)	42, 156, 316, 423
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	3 cut(s)	179, 198, 203
MboI	GATC	3 cut(s)	177, 196, 201
MboII	GAAGA	5 cut(s)	61, 139, 172, 206, 271
MflI	RGATCY	2 cut(s)	177, 196
MluCI	AATT	2 cut(s)	59, 233
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	6 cut(s)	58, 125, 246, 281, 377, 398
MslI	CAYNNNNRTG	1 cut(s)	50
NcoI	CCATGG	2 cut(s)	102, 111
NdeII	GATC	3 cut(s)	177, 196, 201
NlaIII	CATG	4 cut(s)	49, 106, 115, 385
NmuCI	GTSAC	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	24, 57, 378
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PspPI	GGNCC	2 cut(s)	265, 385
PsuI	RGATCY	2 cut(s)	177, 196
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	50
SatI	GCNGC	3 cut(s)	23, 56, 377
Sau3AI	GATC	3 cut(s)	177, 196, 201
Sau96I	GGNCC	2 cut(s)	265, 385
SchI	GAGTC	1 cut(s)	295
SetI	ASST	5 cut(s)	80, 226, 257, 273, 374
SfaNI	GCATC	4 cut(s)	42, 156, 316, 423
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	2 cut(s)	59, 233
StyI	CCWWGG	2 cut(s)	102, 111
TaiI	ACGT	1 cut(s)	374
TasI	AATT	2 cut(s)	59, 233
TatI	WGTACW	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	3 cut(s)	22, 55, 376
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.