Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041981.1

Orthogroup ID

OG0007343

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1240

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041981.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 478 bp

aaatcaagctttgctgtatgcccttcttgcaggtctcagtataataccaatggctgcttctgtgactggaacagcacatgaagatgctgcaattagagggggagataagcttgtactaaagggtttgaagttccatggtttccatggggtgaagccagaagagaggaagttgggtcagaagtttctgatagatgttgatgcttggatggatcttcgggtggctggaagatctgatcagttgtcagacaccattagctacaccgaaatttatcgcattgtcaaagaggttgtagaagggccacctcataatcttctggagtctgttgctgaactcattgcatctaccactctgaaaaactatccccagatagctgctgtctctgtgaaagttggaaagcctcacgttgctgttcatggtcctcttgattacttgggcgttgagatatttagatacaggagtattgatgcactgaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004150 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016829 GO:0016830 GO:0016832 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

FolB

Protein Analysis

158

Amino Acids

17.23

Weight (kDa)

6.65

Isoelectric Point (pI)

16.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11750 AT5G62980 AT5G62980
fragaria_vesca	FvH4_6g20690
malus_domestica	MD12G1043200.v1.1 MD14G1042300.v1.1
prunus_persica	Prupe.7G091600_v2.0.a1 Prupe.7G091600_v2.0.a1 Prupe.7G091600_v2.0.a1
pyrus_communis	pycom12g03730 pycom14g03600
rosa_chinensis	RchiOBHm_Chr3g0476591
rosa_laevigata	RLG00000001983 RLG00000023760
rosa_multiflora	Rmu_sc0035333.1_g000001 Rmu_sc0041981.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405180
rosa_rugosa	Rorug03G0155500
rosa_samantha	Rh3AG206100 Rh3BG238700 Rh3CG232400 Rh3DG232300 Rh7DG310000
rosa_wichuraiana	Rw3G018770 Rw7G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	265
AfaI	GTAC	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	4 cut(s)	9, 110, 256, 372
AluI	AGCT	4 cut(s)	9, 110, 256, 372
Alw26I	GTCTC	2 cut(s)	39, 383
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	3 cut(s)	54, 87, 372
ApoI	RAATTY	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	297, 417
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	417
BaeI	ACNNNNGTAYC	2 cut(s)	443, 476
BbvI	GCAGC	3 cut(s)	41, 74, 359
BccI	CCATC	1 cut(s)	200
BclI	TGATCA	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	39, 383
BfuAI	ACCTGC	1 cut(s)	21
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	3 cut(s)	55, 88, 373
BlsI	GCNGC	3 cut(s)	56, 89, 374
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	2 cut(s)	297, 417
BmsI	GCATC	4 cut(s)	74, 188, 348, 455
BpmI	CTGGAG	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	134, 143
Bse1I	ACTGG	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	334
BseDI	CCNNGG	2 cut(s)	134, 143
BseGI	GGATG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	41, 74, 359
BshFI	GGCC	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	39, 383
BsnI	GGCC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	209, 228, 233
Bsp19I	CCATGG	2 cut(s)	134, 143
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	134, 143
BssMI	GATC	3 cut(s)	209, 228, 233
BssT1I	CCWWGG	2 cut(s)	134, 143
Bst6I	CTCTTC	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	2 cut(s)	134, 143
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	3 cut(s)	212, 231, 236
BstMAI	GTCTC	2 cut(s)	39, 383
BstMBI	GATC	3 cut(s)	209, 228, 233
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	41, 74, 359
BstX2I	RGATCY	2 cut(s)	209, 228
BstYI	RGATCY	2 cut(s)	209, 228
BsuRI	GGCC	1 cut(s)	299
BtgI	CCRYGG	2 cut(s)	134, 143
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	297, 417
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	4 cut(s)	78, 135, 144, 414
CviJI	RGCY	9 cut(s)	9, 54, 110, 155, 222, 256, 299, 372, 398
CviKI_1	RGCY	9 cut(s)	9, 54, 110, 155, 222, 256, 299, 372, 398
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	3 cut(s)	211, 230, 235
DpnII	GATC	3 cut(s)	209, 228, 233
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	134, 143
Eco31I	GGTCTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	134, 143
ErhI	CCWWGG	2 cut(s)	134, 143
FaeI	CATG	4 cut(s)	81, 138, 147, 417
FaiI	YATR	7 cut(s)	19, 42, 79, 136, 145, 307, 415
FatI	CATG	4 cut(s)	77, 134, 143, 413
FbaI	TGATCA	1 cut(s)	233
Fnu4HI	GCNGC	3 cut(s)	55, 88, 373
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	55, 88, 373
GluI	GCNGC	3 cut(s)	55, 88, 373
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	81, 138, 147, 417
HindIII	AAGCTT	2 cut(s)	7, 108
HinfI	GANTC	1 cut(s)	318
HphI	GGTGA	1 cut(s)	161
Hpy188I	TCNGA	5 cut(s)	178, 187, 233, 245, 352
Hpy188III	TCNNGA	2 cut(s)	315, 423
HpyAV	CCTTC	2 cut(s)	33, 288
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	4 cut(s)	30, 90, 339, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	4 cut(s)	81, 138, 147, 417
Ksp22I	TGATCA	1 cut(s)	233
Kzo9I	GATC	3 cut(s)	209, 228, 233
LpnPI	CCDG	7 cut(s)	16, 52, 169, 208, 300, 378, 440
Lsp1109I	GCAGC	3 cut(s)	41, 74, 359
LweI	GCATC	4 cut(s)	74, 188, 348, 455
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	3 cut(s)	211, 230, 235
MboI	GATC	3 cut(s)	209, 228, 233
MboII	GAAGA	5 cut(s)	93, 171, 204, 238, 303
MflI	RGATCY	2 cut(s)	209, 228
MluCI	AATT	2 cut(s)	91, 265
MlyI	GAGTC	1 cut(s)	327
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	6 cut(s)	90, 157, 278, 313, 409, 430
MslI	CAYNNNNRTG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	27
NcoI	CCATGG	2 cut(s)	134, 143
NdeII	GATC	3 cut(s)	209, 228, 233
NlaIII	CATG	4 cut(s)	81, 138, 147, 417
NmuCI	GTSAC	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	56, 89, 374
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PspPI	GGNCC	2 cut(s)	297, 417
PsuI	RGATCY	2 cut(s)	209, 228
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	82
SatI	GCNGC	3 cut(s)	55, 88, 373
Sau3AI	GATC	3 cut(s)	209, 228, 233
Sau96I	GGNCC	2 cut(s)	297, 417
SchI	GAGTC	1 cut(s)	327
SetI	ASST	8 cut(s)	11, 35, 112, 258, 289, 305, 374, 406
SfaNI	GCATC	4 cut(s)	74, 188, 348, 455
SinI	GGWCC	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	82
Sse9I	AATT	2 cut(s)	91, 265
StyI	CCWWGG	2 cut(s)	134, 143
TaiI	ACGT	1 cut(s)	406
TasI	AATT	2 cut(s)	91, 265
TatI	WGTACW	1 cut(s)	113
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	3 cut(s)	54, 87, 372
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	94, 402
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	417
XapI	RAATTY	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.