Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007343

Physical Location & Seq

Genomic Coordinates Forward (+)

3650090 .. 3651870

Gene Structure 1781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTGCGCCCACTTCTGGAACAATACTGGAAGATGCTGCAGTAAGAGGGGGAGATAAGCTCATATTGAGGGGTTTGAAGTTCCATGGTTTCCATGGGGTGAAGCCAGAGGAAAGGAAGTTGGGTCAGAAGTTTGTGATAGATGTTGATGCTTGGATGGATCTCCGGGAGGCTGGTAAATCTGATCACTTGTCAGATACCGTTAGTTACACCGAAATCTATCGTATTGTAAAGGAAGTTGTAGAAGGGCCTCCTCATAATCTTCTGGAGTCCGTGGCTCAACAAGTTGCGTCTACCACTCTGAAAAATTATCCCCAGATATCTGCTGTCTCTGTGAAAGTTGCGAAGCCGCATGTCGCTGTTCATGGTCCTCTTGACTACCTGGGTGTCGAGATTTTTAGATACAGAAGTATTGATGCGCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004150 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016829 GO:0016830 GO:0016832 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

FolB

Protein Analysis

143

Amino Acids

15.63

Weight (kDa)

7.02

Isoelectric Point (pI)

24.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11750 AT5G62980 AT5G62980
fragaria_vesca	FvH4_6g20690
malus_domestica	MD12G1043200.v1.1 MD14G1042300.v1.1
prunus_persica	Prupe.7G091600_v2.0.a1 Prupe.7G091600_v2.0.a1 Prupe.7G091600_v2.0.a1
pyrus_communis	pycom12g03730 pycom14g03600
rosa_chinensis	RchiOBHm_Chr3g0476591
rosa_laevigata	RLG00000001983 RLG00000023760
rosa_multiflora	Rmu_sc0035333.1_g000001 Rmu_sc0041981.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405180
rosa_rugosa	Rorug03G0155500
rosa_samantha	Rh3AG206100 Rh3BG238700 Rh3CG232400 Rh3DG232300 Rh7DG310000
rosa_wichuraiana	Rw3G018770 Rw7G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	293
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	5, 38
AspLEI	GCGC	2 cut(s)	10, 421
AspS9I	GGNCC	2 cut(s)	248, 368
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	368
BaeI	ACNNNNGTAYC	2 cut(s)	394, 427
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	383
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	334
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	3 cut(s)	6, 39, 350
BlsI	GCNGC	3 cut(s)	7, 40, 351
Bme1390I	CCNGG	2 cut(s)	167, 383
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	248, 368
BmrFI	CCNGG	2 cut(s)	167, 383
BmsI	GCATC	3 cut(s)	25, 139, 406
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
BpmI	CTGGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	4 cut(s)	85, 94, 273, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	4 cut(s)	85, 94, 273, 382
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	160, 184
Bsp19I	CCATGG	2 cut(s)	85, 94
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	1 cut(s)	250
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	4 cut(s)	85, 94, 273, 382
BssMI	GATC	2 cut(s)	160, 184
BssT1I	CCWWGG	2 cut(s)	85, 94
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	202
BstDSI	CCRYGG	3 cut(s)	85, 94, 273
BstF5I	GGATG	1 cut(s)	162
BstHHI	GCGC	2 cut(s)	10, 421
BstKTI	GATC	2 cut(s)	163, 187
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	160, 184
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	165, 381
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	250
BtgI	CCRYGG	3 cut(s)	85, 94, 273
BtsCI	GGATG	1 cut(s)	162
CfoI	GCGC	2 cut(s)	10, 421
Cfr13I	GGNCC	2 cut(s)	248, 368
CseI	GACGC	1 cut(s)	279
CviAII	CATG	4 cut(s)	86, 95, 353, 365
CviJI	RGCY	7 cut(s)	5, 61, 106, 173, 250, 278, 349
CviKI_1	RGCY	7 cut(s)	5, 61, 106, 173, 250, 278, 349
DpnI	GATC	2 cut(s)	162, 186
DpnII	GATC	2 cut(s)	160, 184
Eco130I	CCWWGG	2 cut(s)	85, 94
Eco32I	GATATC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	2 cut(s)	85, 94
ErhI	CCWWGG	2 cut(s)	85, 94
FaeI	CATG	4 cut(s)	89, 98, 356, 368
FaiI	YATR	6 cut(s)	65, 87, 96, 258, 354, 366
FatI	CATG	4 cut(s)	85, 94, 352, 364
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	3 cut(s)	6, 39, 350
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	3 cut(s)	6, 39, 350
GlaI	GCGC	2 cut(s)	9, 420
GluI	GCNGC	3 cut(s)	6, 39, 350
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	166
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	2 cut(s)	10, 421
Hin1II	CATG	4 cut(s)	89, 98, 356, 368
Hin6I	GCGC	2 cut(s)	8, 419
HinP1I	GCGC	2 cut(s)	8, 419
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	4 cut(s)	129, 184, 196, 303
Hpy188III	TCNNGA	4 cut(s)	18, 266, 374, 391
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	89, 98, 356, 368
HspAI	GCGC	2 cut(s)	8, 419
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	160, 184
LpnPI	CCDG	9 cut(s)	3, 14, 120, 159, 179, 251, 329, 368, 395
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	3 cut(s)	25, 139, 406
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	2 cut(s)	162, 186
MboI	GATC	2 cut(s)	160, 184
MboII	GAAGA	2 cut(s)	44, 254
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	1 cut(s)	307
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	7 cut(s)	41, 63, 103, 163, 261, 264, 381
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	2 cut(s)	167, 383
MvaI	CCWGG	1 cut(s)	383
NciI	CCSGG	1 cut(s)	167
NcoI	CCATGG	2 cut(s)	85, 94
NdeII	GATC	2 cut(s)	160, 184
NlaIII	CATG	4 cut(s)	89, 98, 356, 368
NspI	RCATGY	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	7, 40, 351
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspPI	GGNCC	2 cut(s)	248, 368
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	160
SatI	GCNGC	3 cut(s)	6, 39, 350
Sau3AI	GATC	2 cut(s)	160, 184
Sau96I	GGNCC	2 cut(s)	248, 368
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	167, 383
SetI	ASST	2 cut(s)	63, 384
SfaNI	GCATC	3 cut(s)	25, 139, 406
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	368
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	165, 381
StyI	CCWWGG	2 cut(s)	85, 94
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	390
TasI	AATT	1 cut(s)	307
TauI	GCSGC	1 cut(s)	352
TseI	GCWGC	2 cut(s)	5, 38
TspDTI	ATGAA	1 cut(s)	353
TspGWI	ACGGA	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	368
XceI	RCATGY	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.