AT5G63150

Mitochondrial domain of unknown function (DUF1713)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008619
Physical Location & Seq
Forward (+)
25330125 .. 25330907
783 bp
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UTR
Exon/CDS
Intron
AT5G63150.1

Sequence Viewer

Length: 417 bp
ATGGCGAATCTAATTCCTAGATTCCTCAGGAACAAGTCTTGCTTCAATTCAATCCAAAGGCTTACTACTACTCCTTCTCTCTTCACTTACCAGAAGCCCTACTTCAACAACAACAACAACATCGACTCTGTTATTGAGAAACCCGATCCAGTTTCTTTTACTAATCCTTTGATTACACTCTCCGGGAATGAATCCAATCAACCTATGCGGTTTTACCCTAGTTTCTCCATGGGGTTATGCTTGAATCCCAAAATGATTCAAGGTCTGGATCTAGCTGAAACAGCGTCGTTGGAGGAGGAGGAAGAGGATACGAAGGAGATTGTGATTTACGCTGATAGTGTGAAGAAGAAGAGGAAGAAGAAGATGAACAAGCACAAGTATAGGAAACTCAGGAAACAGCTTGGTCGCAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1713

Protein Analysis

138

Amino Acids

16.04

Weight (kDa)

9.72

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX24_C PF08213 111 - 133 7.1e-09 Mitochondrial mRNA-processing protein COX24, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 208
AclWI GGATC 2 cut(s) 140, 276
AgsI TTSAA 5 cut(s) 46, 51, 106, 244, 260
AluBI AGCT 2 cut(s) 275, 400
AluI AGCT 2 cut(s) 275, 400
AlwI GGATC 2 cut(s) 140, 276
AsuC2I CCSGG 1 cut(s) 184
AxyI CCTNAGG 1 cut(s) 26
BciVI GTATCC 1 cut(s) 301
BcnI CCSGG 1 cut(s) 184
BfaI CTAG 3 cut(s) 18, 219, 272
BfuI GTATCC 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bse1I ACTGG 1 cut(s) 149
Bse21I CCTNAGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 228
BseMII CTCAG 2 cut(s) 40, 403
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 2 cut(s) 308, 311
BsiSI CCGG 1 cut(s) 183
Bsp143I GATC 2 cut(s) 145, 268
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 1 cut(s) 208
BspCNI CTCAG 2 cut(s) 39, 402
BspPI GGATC 2 cut(s) 140, 276
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 145, 268
BssT1I CCWWGG 1 cut(s) 228
Bst6I CTCTTC 3 cut(s) 86, 297, 344
BstDEI CTNAG 2 cut(s) 26, 389
BstDSI CCRYGG 1 cut(s) 228
BstKTI GATC 2 cut(s) 148, 271
BstMBI GATC 2 cut(s) 145, 268
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu36I CCTNAGG 1 cut(s) 26
BsuI GTATCC 1 cut(s) 301
BtgI CCRYGG 1 cut(s) 228
CseI GACGC 1 cut(s) 273
CviAII CATG 1 cut(s) 229
CviJI RGCY 4 cut(s) 61, 97, 275, 400
CviKI_1 RGCY 4 cut(s) 61, 97, 275, 400
DdeI CTNAG 2 cut(s) 26, 389
DpnI GATC 2 cut(s) 147, 270
DpnII GATC 2 cut(s) 145, 268
Eam1104I CTCTTC 3 cut(s) 86, 297, 344
EarI CTCTTC 3 cut(s) 86, 297, 344
Eco130I CCWWGG 1 cut(s) 228
Eco81I CCTNAGG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 232
FaiI YATR 5 cut(s) 206, 230, 238, 381, 415
FalI AAGNNNNNCTT 4 cut(s) 26, 58, 86, 118
FatI CATG 1 cut(s) 228
FspBI CTAG 3 cut(s) 18, 219, 272
HapII CCGG 1 cut(s) 183
HgaI GACGC 1 cut(s) 273
Hin1II CATG 1 cut(s) 232
HinfI GANTC 6 cut(s) 7, 21, 125, 191, 244, 256
HpaII CCGG 1 cut(s) 183
Hpy188III TCNNGA 3 cut(s) 28, 266, 391
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 84, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 26, 389
Hsp92II CATG 1 cut(s) 232
Kzo9I GATC 2 cut(s) 145, 268
LpnPI CCDG 6 cut(s) 13, 104, 162, 196, 251, 376
MaeI CTAG 3 cut(s) 18, 219, 272
MalI GATC 2 cut(s) 147, 270
MboI GATC 2 cut(s) 145, 268
MboII GAAGA 8 cut(s) 73, 314, 355, 358, 361, 367, 370, 373
MflI RGATCY 1 cut(s) 268
MluCI AATT 2 cut(s) 12, 46
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 6 cut(s) 35, 286, 289, 292, 298, 345
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 281
NciI CCSGG 1 cut(s) 184
NcoI CCATGG 1 cut(s) 228
NdeII GATC 2 cut(s) 145, 268
NlaIII CATG 1 cut(s) 232
PfeI GAWTC 5 cut(s) 7, 21, 191, 244, 256
PfoI TCCNGGA 1 cut(s) 182
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsuI RGATCY 1 cut(s) 268
Sau3AI GATC 2 cut(s) 145, 268
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 184
SetI ASST 4 cut(s) 205, 265, 277, 402
Sse9I AATT 2 cut(s) 12, 46
SsiI CCGC 1 cut(s) 208
SspMI CTAG 3 cut(s) 18, 219, 272
StyD4I CCNGG 1 cut(s) 182
StyI CCWWGG 1 cut(s) 228
TaqI TCGA 1 cut(s) 123
TasI AATT 2 cut(s) 12, 46
TfiI GAWTC 5 cut(s) 7, 21, 191, 244, 256
TspDTI ATGAA 2 cut(s) 204, 380
XspI CTAG 3 cut(s) 18, 219, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.