RLG00000004417

Mitochondrial domain of unknown function (DUF1713)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008619
Physical Location & Seq
Forward (+)
59190967 .. 59194316
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004417

Sequence Viewer

Length: 612 bp
ATGGCTAGCCTTGTCCGGAGACTCACCAGAAACTCAACCTCTCTAAGAACCCATCTTTTCCCTTTTCCTAAACCCTATCTCATTACCCATCACAATCATCTGGGCCCTCCCAAATCTGATACCCAGCTTCCCCATTTGGGTCCTATAAGCGTCGACAAGGTCGAATTGTCGTTGCCGGTTTTCCCCAGTTTTCCATTCGGGTATTGCTTGAATCCGATTTCCCAAATTGGGTCGGAGCGGTTGGGGCTGTGCGAGGCCGATGGGGTCGGGTCTGATGACGCGGGGACGATTTGGGCTGACAGCGTGAAGAAGAAGAGGAAGAGGAAGATGAACAAGCATAAGTTGAGGAAGCTCAGGAAGAGTCTTCGTCGCAAGACCAACCTCCTCTTTGAGCTGGCCCTTGGCGACATTGTTGAAGAGCTCGCCGCCGCGGACGTACTCCATGACAAAGTAGATCTTGGCCTTGGTGACGATTACTTCGAAGAGCTGGACGATATTGGGGTGGCGGACGCCGCGAAAGATGGAGATCTCGCGTTTGATGTGGGCGATCAAACCGCCCTTGAGGATCTTCTCTTTGTCAATGATCTTAATGGCGCAGGTCGGAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1713

Protein Analysis

204

Amino Acids

22.44

Weight (kDa)

6.38

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX24_C PF08213 99 - 123 4.2e-07 Mitochondrial mRNA-processing protein COX24, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 587
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 153
AccII CGCG 4 cut(s) 281, 431, 515, 533
AccIII TCCGGA 1 cut(s) 15
AciI CCGC 8 cut(s) 238, 281, 426, 429, 431, 506, 513, 555
AclWI GGATC 1 cut(s) 573
AcyI GRCGYC 1 cut(s) 510
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 2 cut(s) 137, 228
AgsI TTSAA 2 cut(s) 211, 416
AluBI AGCT 5 cut(s) 127, 352, 394, 421, 487
AluI AGCT 5 cut(s) 127, 352, 394, 421, 487
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 1 cut(s) 573
Aor13HI TCCGGA 1 cut(s) 15
AoxI GGCC 4 cut(s) 103, 255, 396, 460
ApaI GGGCCC 1 cut(s) 107
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 4 cut(s) 103, 104, 140, 397
AsuHPI GGTGA 2 cut(s) 16, 479
AsuII TTCGAA 1 cut(s) 480
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 107, 423
BbsI GAAGAC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 423
BccI CCATC 4 cut(s) 60, 96, 254, 515
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 587
BglII AGATCT 2 cut(s) 454, 526
BisI GCNGC 3 cut(s) 426, 429, 513
BlsI GCNGC 3 cut(s) 427, 430, 514
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 4 cut(s) 103, 104, 140, 397
BmiI GGNNCC 2 cut(s) 105, 141
BmrI ACTGGG 1 cut(s) 180
BmtI GCTAGC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 356
Bpu10I CCTNAGC 1 cut(s) 353
Bpu14I TTCGAA 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 581
BsaBI GATNNNNATC 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 510
BsaJI CCNNGG 3 cut(s) 400, 429, 463
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 228
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 525
BseAI TCCGGA 1 cut(s) 15
BseDI CCNNGG 3 cut(s) 400, 429, 463
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 2 cut(s) 137, 228
BseMII CTCAG 1 cut(s) 367
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 107
BseYI CCCAGC 1 cut(s) 123
Bsh1236I CGCG 4 cut(s) 281, 431, 515, 533
BshFI GGCC 4 cut(s) 105, 257, 398, 462
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 2 cut(s) 16, 176
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 137, 228
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 4 cut(s) 105, 257, 398, 462
Bsp119I TTCGAA 1 cut(s) 480
Bsp120I GGGCCC 1 cut(s) 103
Bsp1286I GDGCHC 2 cut(s) 107, 423
Bsp13I TCCGGA 1 cut(s) 15
Bsp143I GATC 5 cut(s) 454, 526, 547, 565, 583
BspACI CCGC 8 cut(s) 238, 281, 426, 429, 431, 506, 513, 555
BspANI GGCC 4 cut(s) 105, 257, 398, 462
BspCNI CTCAG 1 cut(s) 366
BspEI TCCGGA 1 cut(s) 15
BspFNI CGCG 4 cut(s) 281, 431, 515, 533
BspLI GGNNCC 2 cut(s) 105, 141
BspMI ACCTGC 1 cut(s) 587
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 573
BspQI GCTCTTC 2 cut(s) 411, 477
BspT104I TTCGAA 1 cut(s) 480
BsrBI CCGCTC 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 3 cut(s) 400, 429, 463
BssMI GATC 5 cut(s) 454, 526, 547, 565, 583
BssNI GRCGYC 1 cut(s) 510
BssT1I CCWWGG 2 cut(s) 400, 463
Bst6I CTCTTC 5 cut(s) 308, 314, 353, 411, 477
BstACI GRCGYC 1 cut(s) 510
BstBI TTCGAA 1 cut(s) 480
BstC8I GCNNGC 3 cut(s) 7, 396, 423
BstDEI CTNAG 2 cut(s) 44, 353
BstDSI CCRYGG 1 cut(s) 429
BstFNI CGCG 4 cut(s) 281, 431, 515, 533
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 5 cut(s) 457, 529, 550, 568, 586
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 5 cut(s) 454, 526, 547, 565, 583
BstMWI GCNNNNNNNGC 2 cut(s) 244, 512
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 4 cut(s) 281, 431, 515, 533
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 3 cut(s) 454, 526, 565
BstYI RGATCY 3 cut(s) 454, 526, 565
BsuRI GGCC 4 cut(s) 105, 257, 398, 462
BtgI CCRYGG 1 cut(s) 429
BveI ACCTGC 1 cut(s) 587
Cac8I GCNNGC 3 cut(s) 7, 396, 423
CfoI GCGC 1 cut(s) 596
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 4 cut(s) 103, 104, 140, 397
Cfr42I CCGCGG 1 cut(s) 432
CseI GACGC 3 cut(s) 139, 287, 518
Csp6I GTAC 1 cut(s) 437
CviAII CATG 1 cut(s) 443
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 2 cut(s) 44, 353
DpnI GATC 5 cut(s) 456, 528, 549, 567, 585
DpnII GATC 5 cut(s) 454, 526, 547, 565, 583
Eam1104I CTCTTC 5 cut(s) 308, 314, 353, 411, 477
EarI CTCTTC 5 cut(s) 308, 314, 353, 411, 477
EciI GGCGGA 1 cut(s) 521
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 2 cut(s) 400, 463
Eco24I GRGCYC 2 cut(s) 107, 423
Eco47I GGWCC 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 421
EcoICRI GAGCTC 1 cut(s) 421
EcoO109I RGGNCCY 2 cut(s) 104, 140
EcoT14I CCWWGG 2 cut(s) 400, 463
EcoT38I GRGCYC 2 cut(s) 107, 423
ErhI CCWWGG 2 cut(s) 400, 463
FaeI CATG 1 cut(s) 446
FaiI YATR 3 cut(s) 146, 339, 444
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FaqI GGGAC 1 cut(s) 298
FatI CATG 1 cut(s) 442
FauI CCCGC 1 cut(s) 274
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 3 cut(s) 426, 429, 513
FriOI GRGCYC 2 cut(s) 107, 423
Fsp4HI GCNGC 3 cut(s) 426, 429, 513
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 595
GluI GCNGC 3 cut(s) 426, 429, 513
GsaI CCCAGC 1 cut(s) 127
HaeIII GGCC 4 cut(s) 105, 257, 398, 462
HapII CCGG 2 cut(s) 16, 176
HgaI GACGC 3 cut(s) 139, 287, 518
HhaI GCGC 1 cut(s) 596
Hin1I GRCGYC 1 cut(s) 510
Hin1II CATG 1 cut(s) 446
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 3 cut(s) 21, 211, 361
HpaII CCGG 2 cut(s) 16, 176
HphI GGTGA 2 cut(s) 16, 479
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 5 cut(s) 118, 216, 235, 274, 603
Hpy188III TCNNGA 2 cut(s) 16, 355
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 2 cut(s) 155, 372
HpyCH4IV ACGT 1 cut(s) 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 512
HpyF3I CTNAG 2 cut(s) 44, 353
HpySE526I ACGT 1 cut(s) 435
Hsp92I GRCGYC 1 cut(s) 510
Hsp92II CATG 1 cut(s) 446
HspAI GCGC 1 cut(s) 594
Kpn2I TCCGGA 1 cut(s) 15
KspI CCGCGG 1 cut(s) 432
Kzo9I GATC 5 cut(s) 454, 526, 547, 565, 583
LguI GCTCTTC 2 cut(s) 411, 477
LmnI GCTCC 1 cut(s) 235
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 1 cut(s) 467
MalI GATC 5 cut(s) 456, 528, 549, 567, 585
MbiI CCGCTC 1 cut(s) 238
MboI GATC 5 cut(s) 454, 526, 547, 565, 583
MflI RGATCY 3 cut(s) 454, 526, 565
MhlI GDGCHC 2 cut(s) 107, 423
MluCI AATT 2 cut(s) 164, 225
MlyI GAGTC 2 cut(s) 15, 370
MmeI TCCRAC 2 cut(s) 213, 581
MnlI CCTC 9 cut(s) 49, 117, 247, 309, 315, 339, 392, 395, 556
MroI TCCGGA 1 cut(s) 15
MseI TTAA 1 cut(s) 588
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 2 cut(s) 16, 176
MvnI CGCG 4 cut(s) 281, 431, 515, 533
MwoI GCNNNNNNNGC 2 cut(s) 244, 512
NdeII GATC 5 cut(s) 454, 526, 547, 565, 583
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 446
NlaIV GGNNCC 2 cut(s) 105, 141
NmuCI GTSAC 1 cut(s) 467
NspV TTCGAA 1 cut(s) 480
PciSI GCTCTTC 2 cut(s) 411, 477
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 477
PfeI GAWTC 1 cut(s) 211
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 3 cut(s) 427, 430, 514
PleI GAGTC 2 cut(s) 15, 369
PpsI GAGTC 2 cut(s) 15, 369
PpuMI RGGWCCY 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 105, 141
PspOMI GGGCCC 1 cut(s) 103
PspPI GGNCC 4 cut(s) 103, 104, 140, 397
PspPPI RGGWCCY 1 cut(s) 140
PsuI RGATCY 3 cut(s) 454, 526, 565
PsyI GACNNNGTC 1 cut(s) 158
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
SacI GAGCTC 1 cut(s) 423
SacII CCGCGG 1 cut(s) 432
SalI GTCGAC 1 cut(s) 152
SapI GCTCTTC 2 cut(s) 411, 477
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 3 cut(s) 426, 429, 513
Sau3AI GATC 5 cut(s) 454, 526, 547, 565, 583
Sau96I GGNCC 4 cut(s) 103, 104, 140, 397
SchI GAGTC 2 cut(s) 15, 370
SduI GDGCHC 2 cut(s) 107, 423
Sfr303I CCGCGG 1 cut(s) 432
SfuI TTCGAA 1 cut(s) 480
SgrBI CCGCGG 1 cut(s) 432
SinI GGWCC 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 2 cut(s) 164, 225
SsiI CCGC 8 cut(s) 238, 281, 426, 429, 431, 506, 513, 555
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 423
StyI CCWWGG 2 cut(s) 400, 463
TaiI ACGT 1 cut(s) 438
TaqI TCGA 3 cut(s) 153, 162, 480
TasI AATT 2 cut(s) 164, 225
TauI GCSGC 3 cut(s) 428, 431, 515
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TseFI GTSAC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 1 cut(s) 344
Tth111I GACNNNGTC 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.