MD14G1167200.v1.1

Mitochondrial domain of unknown function (DUF1713)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0008619
Physical Location & Seq
Reverse (-)
26022294 .. 26023025
732 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1167200.v1.1.491

Sequence Viewer

Length: 375 bp
ATGGCGAGTTTTGTCCACAAACTTGCTAAAAACGCACCGGCTTTAAGAACAGCGGCTTCCCTCAAATCCCATCTCTTCCCCAAACCCACAGCCTCCCTTATTTCTCACCATAGCCATCTAGGCCCACCCAAACCCGAATTCTCAGAAGACCCGGTTGCCCAATTAGGTCCCACAAGCTTCCACAATGCTGAATCTCCCAACCCCTTCCCCATTTTCCCCAATTTCCCATTTGCGTTTTGCTTAAATCCGCTTTACCCAGCTGGGTTCGATCGGTTGGGTGTTTTCGAGGCGGTCGAGGTGGAGTCCGTTGATGTGAGGACGATTTGGGCTGACAGTGTGAAGAAGAAGAGGAAGAAGAAGATGAACAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1713

Protein Analysis

125

Amino Acids

13.72

Weight (kDa)

9.67

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 53, 248, 290
AcsI RAATTY 1 cut(s) 137
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 2 cut(s) 177, 260
AluI AGCT 2 cut(s) 177, 260
AoxI GGCC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 122, 167
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 153
BccI CCATC 2 cut(s) 78, 123
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 119
BglI GCCNNNNNGGC 1 cut(s) 120
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 122, 167
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 37
BseMII CTCAG 1 cut(s) 156
BseYI CCCAGC 2 cut(s) 256, 260
Bsh1285I CGRYCG 2 cut(s) 271, 294
BshFI GGCC 1 cut(s) 123
BsiEI CGRYCG 2 cut(s) 271, 294
BsiSI CCGG 2 cut(s) 38, 152
BslFI GGGAC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 3 cut(s) 53, 248, 290
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BssMI GATC 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 2 cut(s) 80, 341
BstDEI CTNAG 1 cut(s) 142
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMCI CGRYCG 2 cut(s) 271, 294
BstMWI GCNNNNNNNGC 2 cut(s) 32, 120
BstSCI CCNGG 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 340
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 122, 167
CviJI RGCY 9 cut(s) 41, 56, 92, 114, 123, 177, 260, 329, 370
CviKI_1 RGCY 9 cut(s) 41, 56, 92, 114, 123, 177, 260, 329, 370
DdeI CTNAG 1 cut(s) 142
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 80, 341
EarI CTCTTC 2 cut(s) 80, 341
Eco47I GGWCC 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 137
FaiI YATR 1 cut(s) 111
FaqI GGGAC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 54
GsaI CCCAGC 2 cut(s) 260, 264
HaeIII GGCC 1 cut(s) 123
HapII CCGG 2 cut(s) 38, 152
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 2 cut(s) 191, 302
HpaII CCGG 2 cut(s) 38, 152
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 120
HpyF3I CTNAG 1 cut(s) 142
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 4 cut(s) 51, 165, 246, 270
MaeI CTAG 1 cut(s) 119
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 8 cut(s) 67, 158, 352, 355, 358, 364, 367, 370
MluCI AATT 3 cut(s) 137, 161, 220
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 6 cut(s) 71, 103, 280, 289, 309, 342
MseI TTAA 2 cut(s) 44, 242
MspA1I CMGCKG 2 cut(s) 53, 260
MspI CCGG 2 cut(s) 38, 152
MspR9I CCNGG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 32, 120
NciI CCSGG 1 cut(s) 152
NdeII GATC 1 cut(s) 268
NlaIV GGNNCC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 55
Ple19I CGATCG 1 cut(s) 271
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 167
PspFI CCCAGC 2 cut(s) 256, 260
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 2 cut(s) 122, 167
PspPPI RGGWCCY 1 cut(s) 167
PvuI CGATCG 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 260
SaqAI TTAA 2 cut(s) 44, 242
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 2 cut(s) 122, 167
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 152
SetI ASST 4 cut(s) 169, 179, 262, 300
SinI GGWCC 1 cut(s) 167
Sse9I AATT 3 cut(s) 137, 161, 220
SsiI CCGC 3 cut(s) 53, 248, 290
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 335
TaqI TCGA 3 cut(s) 267, 285, 294
TasI AATT 3 cut(s) 137, 161, 220
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 44, 242
Tru9I TTAA 2 cut(s) 44, 242
TscAI CASTG 1 cut(s) 340
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 1 cut(s) 137
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.