FvH4_5g06710

Mitochondrial domain of unknown function (DUF1713)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008619
Physical Location & Seq
Forward (+)
3953730 .. 3954923
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06710.t1

Sequence Viewer

Length: 375 bp
ATGGCTAGCCTAGTCCGGAGACTCGCCAGAAACACAAGCTCTATAAGAACCCATATTTTCCCCAAACCAAAACCCTACCCGGTTACCCATCACAACCATCTGGGCCCTCCCAAATCTGCGTACACAGAGCTTCCCCATTTGGGTCCTGTAAGAGTTGACAAGGTTGAATTGTCGTTGCCGGTTTTCCCTAGCTTTCCGTTCGGGTTTTGCTTGAACCCGATTGCGCAAATCGGGTCGGGGCAGTTGGGCGATGGGGTCGGGTCGGATGATGAGGCGGGGACGATTTGGGCGGACAGTGTGAAGAAGAAGAGGAAGAGGAAGATGAACAAGCATAAGTTGAGGAAGCTGAGGAAGAGCCTTCGTCGCAAGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1713

Protein Analysis

125

Amino Acids

13.94

Weight (kDa)

10.9

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX24_C PF08213 97 - 121 2e-07 Mitochondrial mRNA-processing protein COX24, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 15
AciI CCGC 2 cut(s) 275, 290
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 167, 214
AjiI CACGTC 1 cut(s) 372
AluBI AGCT 4 cut(s) 39, 130, 192, 346
AluI AGCT 4 cut(s) 39, 130, 192, 346
Alw26I GTCTC 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 15
AoxI GGCC 1 cut(s) 103
ApaI GGGCCC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 3 cut(s) 103, 104, 143
AsuC2I CCSGG 1 cut(s) 80
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 107
BbvCI CCTCAGC 1 cut(s) 347
BccI CCATC 3 cut(s) 96, 105, 245
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 3 cut(s) 6, 11, 189
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 143
BmgBI CACGTC 1 cut(s) 372
BmgT120I GGNCC 3 cut(s) 103, 104, 143
BmiI GGNNCC 2 cut(s) 105, 144
BmrFI CCNGG 1 cut(s) 80
BmtI GCTAGC 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 178
BseAI TCCGGA 1 cut(s) 15
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 338
BseSI GKGCMC 1 cut(s) 107
BshFI GGCC 1 cut(s) 105
BsiSI CCGG 3 cut(s) 16, 80, 179
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 1 cut(s) 105
Bsp120I GGGCCC 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 107
Bsp13I TCCGGA 1 cut(s) 15
BspACI CCGC 2 cut(s) 275, 290
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 339
BspEI TCCGGA 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 105, 144
BspOI GCTAGC 1 cut(s) 9
BspQI GCTCTTC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 3 cut(s) 302, 308, 347
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 347
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 107
BsuRI GGCC 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 264
BtrI CACGTC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 3 cut(s) 103, 104, 143
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 8 cut(s) 5, 9, 39, 105, 130, 192, 346, 357
CviKI_1 RGCY 8 cut(s) 5, 9, 39, 105, 130, 192, 346, 357
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 347
Eam1104I CTCTTC 3 cut(s) 302, 308, 347
EarI CTCTTC 3 cut(s) 302, 308, 347
EciI GGCGGA 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 143
Eco91I GGTNACC 1 cut(s) 82
EcoO109I RGGNCCY 2 cut(s) 104, 143
EcoO65I GGTNACC 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 107
FaiI YATR 3 cut(s) 44, 54, 333
FaqI GGGAC 1 cut(s) 292
FauI CCCGC 1 cut(s) 268
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 107
FspBI CTAG 3 cut(s) 6, 11, 189
FspI TGCGCA 1 cut(s) 225
GlaI GCGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 105
HapII CCGG 3 cut(s) 16, 80, 179
HhaI GCGC 1 cut(s) 226
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 1 cut(s) 21
HpaII CCGG 3 cut(s) 16, 80, 179
Hpy166II GTNNAC 2 cut(s) 123, 157
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 2 cut(s) 123, 157
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 1 cut(s) 371
HspAI GCGC 1 cut(s) 224
Kpn2I TCCGGA 1 cut(s) 15
LguI GCTCTTC 1 cut(s) 347
LpnPI CCDG 6 cut(s) 29, 40, 86, 93, 159, 192
MaeI CTAG 3 cut(s) 6, 11, 189
MaeII ACGT 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 6 cut(s) 313, 316, 319, 325, 331, 364
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 1 cut(s) 167
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 6 cut(s) 117, 265, 303, 309, 333, 342
MroI TCCGGA 1 cut(s) 15
MspI CCGG 3 cut(s) 16, 80, 179
MspR9I CCNGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 363
NciI CCSGG 1 cut(s) 80
NheI GCTAGC 1 cut(s) 5
NlaIV GGNNCC 2 cut(s) 105, 144
NsbI TGCGCA 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 347
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PpuMI RGGWCCY 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 143
PspEI GGTNACC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 105, 144
PspOMI GGGCCC 1 cut(s) 103
PspPI GGNCC 3 cut(s) 103, 104, 143
PspPPI RGGWCCY 1 cut(s) 143
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SapI GCTCTTC 1 cut(s) 347
Sau96I GGNCC 3 cut(s) 103, 104, 143
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 107
SetI ASST 6 cut(s) 41, 132, 165, 194, 348, 374
SinI GGWCC 1 cut(s) 143
Sse9I AATT 1 cut(s) 167
SsiI CCGC 2 cut(s) 275, 290
SspMI CTAG 3 cut(s) 6, 11, 189
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 374
TasI AATT 1 cut(s) 167
TscAI CASTG 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 338
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 143
XspI CTAG 3 cut(s) 6, 11, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.