Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008619

Physical Location & Seq

Genomic Coordinates Reverse (-)

18218789 .. 18234507

Gene Structure 15719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG099700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAGAACTCGAGTTCAGCTGCCAGAGACAGAGATTCAAGTCACTCACCGCTATTTGATGGGTCTAAGGTCGAGTATTAGAAATATGGTTGAGCTACAACCTTGCTGGTCATTAGCAACGGCTGTTCAACTCGCCATGAAGGTGGAAGCCCAGCAACAGTCAGCTAACCATCGATCAAATCAGTTTGGGAAGAGACAAACGCAGTTAGAAGCTGAACCAGTCCAAGGAAATGCAAAGCTAAAACTTGGAGATGCCTCCAACAGTCTCCAGAACAGTAAGGCAGCAACTAATTTTCAAGGGGGGCAAGTTCGTGGACGTGGAATGGGAAGTGATGCAGCTGGAAGCAGCAACATAACCTCTCAATTCGTAGGAGGGAAGGTGATCTGTTACAAGTGTGGGCAAAAGGGGCACAAATCTTCCGAATGTAGGAAGACATCCAGCAACCTACTTGTTAGTGAAGACGGAGGGGTCAACAATGAAGATGGACAATACCATGAAAGCCTTCTGGAATTTACAGAAGACGATGTCACATATGAAGATCAAGATCTTCCTAATCTGGTGATACGTCGTACCATGTTAACCCCAAAGGTTCCTGAAGAGAAAGAGGCCATTGCAGGACTGAAGAATCTTCAACCCAAACCCATTCCGATCGCCTTGGACGAAACTATTAAAGATGTTGAGACTTTTGAAGGGGTTGATAGAGCGTTCATGGTTACCAGGGTGAAGGTCCTGGACGAAATGACGAGCCTTCTCTTTGAGCTGGCCCTTGGTGACCTTGTTGAAGAGCTCGCCGCCGCGGACATACTCCATGATGAAGTAGATCTTGGCATTGGTGGCGATTACTTCAAAGAGTTGGATGATATTGGGGTGGAGGATGCGGCGGAAGATGGAGATCTCGCGTTTGATGTGGGCGATCAAACCGCACTTGAGGATCTTCTCTTTGTCGATGATCTTAATGGCGCAGGTCGGAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

325

Amino Acids

35.64

Weight (kDa)

4.62

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63150
fragaria_vesca	FvH4_5g06710
malus_domestica	MD02G1049300.v1.1 MD06G1161600.v1.1 MD14G1167200.v1.1
prunus_persica	Prupe.3G296000_v2.0.a1 Prupe.5G161500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0191931
rosa_laevigata	RLG00000004417
rosa_multiflora	Rmu_sc0018275.1_g000002 Rmu_ssc0000421.1_g000016
rosa_roxburghii	Rroxscaffold_153G00436790 Rroxscaffold_2G00104870
rosa_rugosa	Rorug06G0511800
rosa_samantha	Rh4CG099700 Rh4CG149200 Rh6DG182200 Rh6DG333700 Rh7AG122000 Rh7CG126200
rosa_wichuraiana	Rw5G016780 Rw5G034310 Rw6G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	953
AccII	CGCG	2 cut(s)	797, 899
AciI	CCGC	7 cut(s)	49, 792, 795, 797, 878, 881, 921
AclWI	GGATC	1 cut(s)	939
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	2 cut(s)	615, 641
AfaI	GTAC	1 cut(s)	571
AfiI	CCNNNNNNNGG	2 cut(s)	224, 426
AgsI	TTSAA	7 cut(s)	38, 128, 296, 632, 689, 782, 847
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	716, 729
AjuI	GAANNNNNNNTTGG	2 cut(s)	807, 839
AluBI	AGCT	8 cut(s)	19, 94, 164, 212, 238, 338, 760, 787
AluI	AGCT	8 cut(s)	19, 94, 164, 212, 238, 338, 760, 787
Alw21I	GWGCWC	1 cut(s)	789
Alw26I	GTCTC	4 cut(s)	20, 187, 269, 674
AlwI	GGATC	1 cut(s)	939
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	2 cut(s)	606, 762
ApeKI	GCWGC	4 cut(s)	19, 281, 335, 345
ApoI	RAATTY	1 cut(s)	509
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	962
AspS9I	GGNCC	2 cut(s)	727, 763
AsuHPI	GGTGA	5 cut(s)	38, 391, 571, 733, 782
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	727
BaeGI	GKGCMC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	789
BbsI	GAAGAC	3 cut(s)	437, 465, 525
Bbv12I	GWGCWC	1 cut(s)	789
BbvI	GCAGC	4 cut(s)	6, 293, 347, 357
BccI	CCATC	4 cut(s)	52, 177, 476, 881
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	718, 731
BcoDI	GTCTC	4 cut(s)	20, 187, 269, 674
BfuAI	ACCTGC	1 cut(s)	953
BglII	AGATCT	3 cut(s)	544, 820, 892
BisI	GCNGC	7 cut(s)	20, 282, 336, 346, 792, 795, 879
BlsI	GCNGC	7 cut(s)	21, 283, 337, 347, 793, 796, 880
Bme1390I	CCNGG	2 cut(s)	718, 731
Bme18I	GGWCC	1 cut(s)	727
BmeT110I	CYCGRG	1 cut(s)	9
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	727, 763
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	2 cut(s)	718, 731
BmsI	GCATC	3 cut(s)	241, 322, 865
BpiI	GAAGAC	3 cut(s)	437, 465, 525
BpmI	CTGGAG	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	947
Bsa29I	ATCGAT	1 cut(s)	172
BsaBI	GATNNNNATC	2 cut(s)	543, 891
BsaJI	CCNNGG	5 cut(s)	223, 654, 717, 766, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 426
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	609
Bse8I	GATNNNNATC	2 cut(s)	543, 891
BseBI	CCWGG	2 cut(s)	718, 731
BseCI	ATCGAT	1 cut(s)	172
BseDI	CCNNGG	5 cut(s)	223, 654, 717, 766, 795
BseGI	GGATG	3 cut(s)	434, 862, 880
BseJI	GATNNNNATC	2 cut(s)	543, 891
BseLI	CCNNNNNNNGG	2 cut(s)	224, 426
BseMI	GCAATG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	4 cut(s)	6, 293, 347, 357
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	2 cut(s)	797, 899
Bsh1285I	CGRYCG	1 cut(s)	651
BshFI	GGCC	2 cut(s)	608, 764
BshVI	ATCGAT	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	651
BsiHKAI	GWGCWC	1 cut(s)	789
BsiHKCI	CYCGRG	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	224, 426
BsmAI	GTCTC	4 cut(s)	20, 187, 269, 674
BsnI	GGCC	2 cut(s)	608, 764
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	411, 789
BspACI	CCGC	7 cut(s)	49, 792, 795, 797, 878, 881, 921
BspANI	GGCC	2 cut(s)	608, 764
BspDI	ATCGAT	1 cut(s)	172
BspFNI	CGCG	2 cut(s)	797, 899
BspLI	GGNNCC	1 cut(s)	591
BspMI	ACCTGC	1 cut(s)	953
BspPI	GGATC	1 cut(s)	939
BspQI	GCTCTTC	1 cut(s)	777
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	5 cut(s)	223, 654, 717, 766, 795
BssT1I	CCWWGG	3 cut(s)	223, 654, 766
Bst2UI	CCWGG	2 cut(s)	718, 731
Bst4CI	ACNGT	3 cut(s)	159, 263, 275
Bst6I	CTCTTC	3 cut(s)	185, 591, 777
BstC8I	GCNNGC	2 cut(s)	762, 789
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	795
BstEII	GGTNACC	2 cut(s)	712, 770
BstF5I	GGATG	3 cut(s)	434, 862, 880
BstFNI	CGCG	2 cut(s)	797, 899
BstHHI	GCGC	1 cut(s)	962
BstMAI	GTCTC	4 cut(s)	20, 187, 269, 674
BstMCI	CGRYCG	1 cut(s)	651
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 834
BstNI	CCWGG	2 cut(s)	718, 731
BstPI	GGTNACC	2 cut(s)	712, 770
BstSCI	CCNGG	2 cut(s)	716, 729
BstSLI	GKGCMC	1 cut(s)	411
BstUI	CGCG	2 cut(s)	797, 899
BstV1I	GCAGC	4 cut(s)	6, 293, 347, 357
BstV2I	GAAGAC	3 cut(s)	437, 465, 525
BstX2I	RGATCY	4 cut(s)	544, 820, 892, 931
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	4 cut(s)	544, 820, 892, 931
Bsu15I	ATCGAT	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	608, 764
BsuTUI	ATCGAT	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	795
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	3 cut(s)	434, 862, 880
BveI	ACCTGC	1 cut(s)	953
Cac8I	GCNNGC	2 cut(s)	762, 789
CfoI	GCGC	1 cut(s)	962
Cfr13I	GGNCC	2 cut(s)	727, 763
Cfr42I	CCGCGG	1 cut(s)	798
ClaI	ATCGAT	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	570
CviAII	CATG	5 cut(s)	136, 494, 574, 709, 809
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	1 cut(s)	65
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
Eam1104I	CTCTTC	3 cut(s)	185, 591, 777
EarI	CTCTTC	3 cut(s)	185, 591, 777
EciI	GGCGGA	1 cut(s)	896
Ecl136II	GAGCTC	1 cut(s)	787
Eco130I	CCWWGG	3 cut(s)	223, 654, 766
Eco24I	GRGCYC	1 cut(s)	789
Eco47I	GGWCC	1 cut(s)	727
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	2 cut(s)	615, 641
Eco88I	CYCGRG	1 cut(s)	9
Eco91I	GGTNACC	2 cut(s)	712, 770
EcoICRI	GAGCTC	1 cut(s)	787
EcoO109I	RGGNCCY	1 cut(s)	727
EcoO65I	GGTNACC	2 cut(s)	712, 770
EcoRII	CCWGG	2 cut(s)	716, 729
EcoT14I	CCWWGG	3 cut(s)	223, 654, 766
EcoT38I	GRGCYC	1 cut(s)	789
ErhI	CCWWGG	3 cut(s)	223, 654, 766
FaeI	CATG	5 cut(s)	139, 497, 577, 712, 812
FalI	AAGNNNNNCTT	2 cut(s)	807, 839
FatI	CATG	5 cut(s)	135, 493, 573, 708, 808
FauNDI	CATATG	1 cut(s)	532
Fnu4HI	GCNGC	7 cut(s)	20, 282, 336, 346, 792, 795, 879
FokI	GGATG	3 cut(s)	421, 869, 887
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	7 cut(s)	20, 282, 336, 346, 792, 795, 879
GlaI	GCGC	1 cut(s)	961
GluI	GCNGC	7 cut(s)	20, 282, 336, 346, 792, 795, 879
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	608, 764
HhaI	GCGC	1 cut(s)	962
Hin1II	CATG	5 cut(s)	139, 497, 577, 712, 812
Hin6I	GCGC	1 cut(s)	960
HinP1I	GCGC	1 cut(s)	960
HincII	GTYRAC	2 cut(s)	472, 579
HindII	GTYRAC	2 cut(s)	472, 579
HinfI	GANTC	2 cut(s)	34, 625
HpaI	GTTAAC	1 cut(s)	579
HphI	GGTGA	5 cut(s)	38, 391, 571, 733, 782
Hpy166II	GTNNAC	3 cut(s)	314, 472, 579
Hpy188I	TCNGA	4 cut(s)	421, 648, 969, 977
Hpy188III	TCNNGA	4 cut(s)	268, 506, 542, 593
Hpy8I	GTNNAC	3 cut(s)	314, 472, 579
Hpy99I	CGWCG	1 cut(s)	570
HpyAV	CCTTC	6 cut(s)	133, 370, 512, 683, 718, 758
HpyCH4III	ACNGT	3 cut(s)	159, 263, 275
HpyCH4IV	ACGT	2 cut(s)	316, 565
HpyCH4V	TGCA	3 cut(s)	233, 335, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 834
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	2 cut(s)	316, 565
Hsp92II	CATG	5 cut(s)	139, 497, 577, 712, 812
HspAI	GCGC	1 cut(s)	960
KspAI	GTTAAC	1 cut(s)	579
KspI	CCGCGG	1 cut(s)	798
LguI	GCTCTTC	1 cut(s)	777
Lsp1109I	GCAGC	4 cut(s)	6, 293, 347, 357
LweI	GCATC	3 cut(s)	241, 322, 865
MaeII	ACGT	2 cut(s)	316, 565
MaeIII	GTNAC	5 cut(s)	40, 386, 526, 712, 770
MflI	RGATCY	4 cut(s)	544, 820, 892, 931
MhlI	GDGCHC	2 cut(s)	411, 789
MluCI	AATT	3 cut(s)	289, 362, 509
MmeI	TCCRAC	3 cut(s)	282, 834, 947
MnlI	CCTC	7 cut(s)	265, 365, 367, 458, 598, 865, 922
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	3 cut(s)	578, 669, 954
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	3 cut(s)	19, 338, 797
MspR9I	CCNGG	2 cut(s)	718, 731
MvaI	CCWGG	2 cut(s)	718, 731
MvnI	CGCG	2 cut(s)	797, 899
MwoI	GCNNNNNNNGC	2 cut(s)	406, 834
NdeI	CATATG	1 cut(s)	532
NlaIII	CATG	5 cut(s)	139, 497, 577, 712, 812
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	3 cut(s)	40, 526, 770
PaeR7I	CTCGAG	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	777
PcsI	WCGNNNNNNNCGW	1 cut(s)	657
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	34, 625
PflFI	GACNNNGTC	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	729
PkrI	GCNGC	7 cut(s)	21, 283, 337, 347, 793, 796, 880
Ple19I	CGATCG	1 cut(s)	651
PpuMI	RGGWCCY	1 cut(s)	727
Psp124BI	GAGCTC	1 cut(s)	789
Psp5II	RGGWCCY	1 cut(s)	727
Psp6I	CCWGG	2 cut(s)	716, 729
PspEI	GGTNACC	2 cut(s)	712, 770
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	716, 729
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	2 cut(s)	727, 763
PspPPI	RGGWCCY	1 cut(s)	727
PspXI	VCTCGAGB	1 cut(s)	9
PsuI	RGATCY	4 cut(s)	544, 820, 892, 931
PsyI	GACNNNGTC	1 cut(s)	524
PvuI	CGATCG	1 cut(s)	651
PvuII	CAGCTG	2 cut(s)	19, 338
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
RseI	CAYNNNNRTG	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	789
SacII	CCGCGG	1 cut(s)	798
SapI	GCTCTTC	1 cut(s)	777
SaqAI	TTAA	3 cut(s)	578, 669, 954
SatI	GCNGC	7 cut(s)	20, 282, 336, 346, 792, 795, 879
Sau96I	GGNCC	2 cut(s)	727, 763
ScrFI	CCNGG	2 cut(s)	718, 731
SduI	GDGCHC	2 cut(s)	411, 789
SfaNI	GCATC	3 cut(s)	241, 322, 865
Sfr274I	CTCGAG	1 cut(s)	9
Sfr303I	CCGCGG	1 cut(s)	798
SgrBI	CCGCGG	1 cut(s)	798
SinI	GGWCC	1 cut(s)	727
SlaI	CTCGAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	9, 926
SmoI	CTYRAG	2 cut(s)	9, 926
Sse9I	AATT	3 cut(s)	289, 362, 509
SsiI	CCGC	7 cut(s)	49, 792, 795, 797, 878, 881, 921
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	2 cut(s)	716, 729
StyI	CCWWGG	3 cut(s)	223, 654, 766
TaaI	ACNGT	3 cut(s)	159, 263, 275
TaiI	ACGT	2 cut(s)	319, 568
TaqI	TCGA	4 cut(s)	10, 71, 172, 945
TasI	AATT	3 cut(s)	289, 362, 509
TauI	GCSGC	3 cut(s)	794, 797, 881
TfiI	GAWTC	2 cut(s)	34, 625
Tru1I	TTAA	3 cut(s)	578, 669, 954
Tru9I	TTAA	3 cut(s)	578, 669, 954
TseFI	GTSAC	3 cut(s)	40, 526, 770
TseI	GCWGC	4 cut(s)	19, 281, 335, 345
Tsp45I	GTSAC	3 cut(s)	40, 526, 770
TspDTI	ATGAA	6 cut(s)	152, 492, 510, 549, 697, 828
TspGWI	ACGGA	1 cut(s)	477
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	727
XapI	RAATTY	1 cut(s)	509
XhoI	CTCGAG	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.