Rh4CG149200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
32921649 .. 32921867
219 bp
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UTR
Exon/CDS
Intron
Rh4CG149200.1

Sequence Viewer

Length: 219 bp
ATGGCCCTTGGCGACCTTGTTGAAGAGCTCGCCGCCGCAGACATACTCCATGACGAAGTAGATCTTGGCCTTGGTGGCGATTACTTCGAAGAGCTGGACGATATTGGGGTGGCGGATGCGGTGGAAGATGGAGATCTCGCGTTTGATGTGGGCGATCAAACCGCACTTGAGGATCTTCTCTTTGTCGATGATCTTAATGGCACAGGTCTGAAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.58

Weight (kDa)

4.05

Isoelectric Point (pI)

17.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 140
AciI CCGC 5 cut(s) 33, 36, 113, 119, 162
AclWI GGATC 1 cut(s) 180
AgsI TTSAA 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 3 cut(s) 28, 94, 214
AluI AGCT 3 cut(s) 28, 94, 214
Alw21I GWGCWC 1 cut(s) 30
AlwI GGATC 1 cut(s) 180
AoxI GGCC 2 cut(s) 3, 67
AspS9I GGNCC 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 87
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BccI CCATC 1 cut(s) 122
BglI GCCNNNNNGGC 1 cut(s) 75
BglII AGATCT 2 cut(s) 61, 133
BisI GCNGC 2 cut(s) 33, 36
BlsI GCNGC 2 cut(s) 34, 37
BmgT120I GGNCC 1 cut(s) 4
BmsI GCATC 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 7, 70
Bse8I GATNNNNATC 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 7, 70
BseGI GGATG 1 cut(s) 121
BseJI GATNNNNATC 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 2 cut(s) 5, 69
BsiHKAI GWGCWC 1 cut(s) 30
BsnI GGCC 2 cut(s) 5, 69
Bsp119I TTCGAA 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 5 cut(s) 61, 133, 154, 172, 190
BspACI CCGC 5 cut(s) 33, 36, 113, 119, 162
BspANI GGCC 2 cut(s) 5, 69
BspFNI CGCG 1 cut(s) 140
BspPI GGATC 1 cut(s) 180
BspQI GCTCTTC 2 cut(s) 18, 84
BspT104I TTCGAA 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 7, 70
BssMI GATC 5 cut(s) 61, 133, 154, 172, 190
BssT1I CCWWGG 2 cut(s) 7, 70
Bst6I CTCTTC 2 cut(s) 18, 84
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 5 cut(s) 64, 136, 157, 175, 193
BstMBI GATC 5 cut(s) 61, 133, 154, 172, 190
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstUI CGCG 1 cut(s) 140
BstX2I RGATCY 3 cut(s) 61, 133, 172
BstYI RGATCY 3 cut(s) 61, 133, 172
BsuRI GGCC 2 cut(s) 5, 69
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 50
CviJI RGCY 5 cut(s) 5, 28, 69, 94, 214
CviKI_1 RGCY 5 cut(s) 5, 28, 69, 94, 214
DpnI GATC 5 cut(s) 63, 135, 156, 174, 192
DpnII GATC 5 cut(s) 61, 133, 154, 172, 190
Eam1104I CTCTTC 2 cut(s) 18, 84
EarI CTCTTC 2 cut(s) 18, 84
EciI GGCGGA 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 2 cut(s) 7, 70
Eco24I GRGCYC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 28
EcoT14I CCWWGG 2 cut(s) 7, 70
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 7, 70
FaeI CATG 1 cut(s) 53
FaiI YATR 2 cut(s) 44, 51
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 33, 36
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 33, 36
GluI GCNGC 2 cut(s) 33, 36
HaeIII GGCC 2 cut(s) 5, 69
Hin1II CATG 1 cut(s) 53
Hpy188I TCNGA 2 cut(s) 210, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 53
Kzo9I GATC 5 cut(s) 61, 133, 154, 172, 190
LguI GCTCTTC 2 cut(s) 18, 84
LpnPI CCDG 2 cut(s) 80, 189
LweI GCATC 1 cut(s) 106
MalI GATC 5 cut(s) 63, 135, 156, 174, 192
MboI GATC 5 cut(s) 61, 133, 154, 172, 190
MboII GAAGA 4 cut(s) 35, 101, 137, 167
MflI RGATCY 3 cut(s) 61, 133, 172
MhlI GDGCHC 1 cut(s) 30
MnlI CCTC 1 cut(s) 163
MseI TTAA 1 cut(s) 195
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 5 cut(s) 61, 133, 154, 172, 190
NlaIII CATG 1 cut(s) 53
NspV TTCGAA 1 cut(s) 87
PciSI GCTCTTC 2 cut(s) 18, 84
PkrI GCNGC 2 cut(s) 34, 37
Psp124BI GAGCTC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 3 cut(s) 61, 133, 172
SacI GAGCTC 1 cut(s) 30
SapI GCTCTTC 2 cut(s) 18, 84
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 33, 36
Sau3AI GATC 5 cut(s) 61, 133, 154, 172, 190
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 30
SetI ASST 5 cut(s) 18, 30, 96, 208, 216
SfaNI GCATC 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SsiI CCGC 5 cut(s) 33, 36, 113, 119, 162
SstI GAGCTC 1 cut(s) 30
StyI CCWWGG 2 cut(s) 7, 70
TaqI TCGA 2 cut(s) 87, 186
TauI GCSGC 2 cut(s) 35, 38
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.