MD06G1161600.v1.1

Mitochondrial domain of unknown function (DUF1713)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0008619
Physical Location & Seq
Reverse (-)
30255333 .. 30256413
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1161600.v1.1.491

Sequence Viewer

Length: 438 bp
ATGGCGAGCTTTGTTCACAAACTCGCCAGAAACGCACCGTCTCTGAGAACAGCGGTGTCCCTAAGAACCCATCTCTTCCCCAATCCCACACCCTCTCGTATTTCCCACCACAGCCATCTAGGCCCGCCCAAATCCGATTGCGCAGAAGACCCAGTTCCTCAATTTGGTCCCACAAGCTTCCACAATGCTGAATCTCCCAACTCCTTTCCCATTTTCCCCAATTTCCCATTTGGGTTTTGCTTAAATCCGATTTCCCCAGCTGGGTTGGAGCGGTTGGGTGTTTTCGAGGCTTTCGAGGTGGAGTCCGAAGATGCAAGGACGATTTGGGCTGACAGTGTGAAGAAGAAGAGGAAGAAGAAGATGAACAAGCATAAATTAAAGAAGCTCAGGAAGAGTCTTCGCCGCAATGTAGTCATCATAAGGTTACATGAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1713

Protein Analysis

146

Amino Acids

16.47

Weight (kDa)

10.47

Isoelectric Point (pI)

60.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX24_C PF08213 110 - 134 4.6e-08 Mitochondrial mRNA-processing protein COX24, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 142
AccBSI CCGCTC 1 cut(s) 271
AciI CCGC 4 cut(s) 53, 125, 271, 403
AfiI CCNNNNNNNGG 2 cut(s) 164, 261
AluBI AGCT 4 cut(s) 9, 177, 260, 385
AluI AGCT 4 cut(s) 9, 177, 260, 385
Alw26I GTCTC 1 cut(s) 45
AoxI GGCC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 122, 167
AvaII GGWCC 1 cut(s) 167
BbsI GAAGAC 2 cut(s) 153, 389
BccI CCATC 2 cut(s) 78, 123
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 119
BglI GCCNNNNNGGC 1 cut(s) 120
BisI GCNGC 1 cut(s) 403
BlsI GCNGC 1 cut(s) 404
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 122, 167
BmiI GGNNCC 1 cut(s) 169
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 146
BpiI GAAGAC 2 cut(s) 153, 389
Bpu10I CCTNAGC 1 cut(s) 386
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 261
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 164, 261
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 2 cut(s) 35, 400
BseNI ACTGG 1 cut(s) 152
BseYI CCCAGC 2 cut(s) 256, 260
BshFI GGCC 1 cut(s) 123
BslFI GGGAC 2 cut(s) 43, 153
BslI CCNNNNNNNGG 2 cut(s) 164, 261
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 2 cut(s) 43, 153
BsnI GGCC 1 cut(s) 123
BspACI CCGC 4 cut(s) 53, 125, 271, 403
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 2 cut(s) 36, 399
BspLI GGNNCC 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 39, 335
Bst6I CTCTTC 3 cut(s) 80, 341, 386
BstC8I GCNNGC 2 cut(s) 7, 125
BstDEI CTNAG 3 cut(s) 44, 62, 386
BstHHI GCGC 1 cut(s) 143
BstMAI GTCTC 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 32, 120
BstV2I GAAGAC 2 cut(s) 153, 389
BsuRI GGCC 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 2 cut(s) 7, 125
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 122, 167
CviAII CATG 1 cut(s) 428
CviJI RGCY 8 cut(s) 9, 114, 123, 177, 260, 290, 329, 385
CviKI_1 RGCY 8 cut(s) 9, 114, 123, 177, 260, 290, 329, 385
DdeI CTNAG 3 cut(s) 44, 62, 386
Eam1104I CTCTTC 3 cut(s) 80, 341, 386
EarI CTCTTC 3 cut(s) 80, 341, 386
Eco47I GGWCC 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 1 cut(s) 431
FaiI YATR 3 cut(s) 372, 419, 429
FaqI GGGAC 2 cut(s) 43, 153
FatI CATG 1 cut(s) 427
FauI CCCGC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 403
Fsp4HI GCNGC 1 cut(s) 403
FspBI CTAG 1 cut(s) 119
FspI TGCGCA 1 cut(s) 142
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 403
GsaI CCCAGC 2 cut(s) 260, 264
HaeIII GGCC 1 cut(s) 123
HhaI GCGC 1 cut(s) 143
Hin1II CATG 1 cut(s) 431
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 3 cut(s) 191, 302, 394
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 4 cut(s) 45, 136, 249, 307
Hpy188III TCNNGA 1 cut(s) 388
Hpy8I GTNNAC 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 39, 335
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 120
HpyF3I CTNAG 3 cut(s) 44, 62, 386
Hsp92II CATG 1 cut(s) 431
HspAI GCGC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 5 cut(s) 40, 165, 246, 270, 373
LweI GCATC 1 cut(s) 301
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 423
MbiI CCGCTC 1 cut(s) 271
MluCI AATT 3 cut(s) 161, 220, 374
MlyI GAGTC 2 cut(s) 311, 403
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 5 cut(s) 103, 168, 280, 289, 342
MseI TTAA 2 cut(s) 242, 377
MspA1I CMGCKG 2 cut(s) 53, 260
MwoI GCNNNNNNNGC 2 cut(s) 32, 120
NlaIII CATG 1 cut(s) 431
NlaIV GGNNCC 1 cut(s) 169
NsbI TGCGCA 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 404
PleI GAGTC 2 cut(s) 310, 402
PpsI GAGTC 2 cut(s) 310, 402
PspFI CCCAGC 2 cut(s) 256, 260
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 2 cut(s) 122, 167
PvuII CAGCTG 1 cut(s) 260
SaqAI TTAA 2 cut(s) 242, 377
SatI GCNGC 1 cut(s) 403
Sau96I GGNCC 2 cut(s) 122, 167
SchI GAGTC 2 cut(s) 311, 403
SetI ASST 6 cut(s) 11, 179, 262, 300, 387, 425
SfaNI GCATC 1 cut(s) 301
SinI GGWCC 1 cut(s) 167
Sse9I AATT 3 cut(s) 161, 220, 374
SsiI CCGC 4 cut(s) 53, 125, 271, 403
SspMI CTAG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 39, 335
TaqI TCGA 2 cut(s) 285, 294
TasI AATT 3 cut(s) 161, 220, 374
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 242, 377
Tru9I TTAA 2 cut(s) 242, 377
TscAI CASTG 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 377
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 167
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.