Prupe.3G296000_v2.0.a1

Mitochondrial domain of unknown function (DUF1713)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0008619
Physical Location & Seq
Forward (+)
26322717 .. 26323513
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G296000.1

Sequence Viewer

Length: 399 bp
ATGGCTTCAACGATCCAAAGGGTCCTTAGAAGATCACAACCCACAAGAATAATCGATGCTTTACACAACCCTGCAGCGTCAAATCTTATTCTTCACCAACCTCATATCGACCAAACCAATCCCGACCCACATCAATTCCTAAATCTAAGTCCATTGCTGATTGTACCTAAAACACAGAACTTTGGCTCCTCTGGTTTCTCACATATTTTCCCAAGCTTTCCATTTGGGATTTGTTTGAACCCGATTTCATCATCTGGGTTGGTCTCATCCGAGGCAGTAGAAGTGGAGTTTGATGACTCGCGGAAGGTCTGGGCCGATAGCGTGAAGAAGAAGAGGAAGAGGAAGATGAACAAGCACAAGTACAGGAAGCTGAGGAAGCGTCTCCAGAGACAGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1713

Protein Analysis

133

Amino Acids

15.12

Weight (kDa)

10.8

Isoelectric Point (pI)

68.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 301
AciI CCGC 1 cut(s) 301
AclWI GGATC 1 cut(s) 7
AfaI GTAC 2 cut(s) 165, 362
AgsI TTSAA 2 cut(s) 9, 238
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 2 cut(s) 216, 370
AluI AGCT 2 cut(s) 216, 370
Alw26I GTCTC 3 cut(s) 268, 382, 386
AlwI GGATC 1 cut(s) 7
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 22, 312
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 22
BbvCI CCTCAGC 1 cut(s) 371
BbvI GCAGC 1 cut(s) 86
BcoDI GTCTC 3 cut(s) 268, 382, 386
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 22
BmgT120I GGNCC 2 cut(s) 22, 312
BmiI GGNNCC 2 cut(s) 23, 187
BmsI GCATC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 368
Bpu10I CCTNAGC 1 cut(s) 371
Bsa29I ATCGAT 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bse3DI GCAATG 1 cut(s) 152
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 266
BseMI GCAATG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 362
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 301
BshFI GGCC 1 cut(s) 314
BshVI ATCGAT 1 cut(s) 54
BsmAI GTCTC 3 cut(s) 268, 382, 386
BsmBI CGTCTC 1 cut(s) 386
BsnI GGCC 1 cut(s) 314
Bso31I GGTCTC 1 cut(s) 268
Bsp143I GATC 2 cut(s) 12, 32
BspACI CCGC 1 cut(s) 301
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 1 cut(s) 363
BspDI ATCGAT 1 cut(s) 54
BspFNI CGCG 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 23, 187
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 1 cut(s) 7
BspTNI GGTCTC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 2 cut(s) 12, 32
Bst6I CTCTTC 2 cut(s) 326, 332
BstDEI CTNAG 4 cut(s) 26, 146, 371, 396
BstF5I GGATG 1 cut(s) 266
BstFNI CGCG 1 cut(s) 301
BstKTI GATC 2 cut(s) 15, 35
BstMAI GTCTC 3 cut(s) 268, 382, 386
BstMBI GATC 2 cut(s) 12, 32
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 1 cut(s) 301
BstV1I GCAGC 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 1 cut(s) 314
BsuTUI ATCGAT 1 cut(s) 54
BtsCI GGATG 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 22, 312
ClaI ATCGAT 1 cut(s) 54
CseI GACGC 2 cut(s) 66, 368
Csp6I GTAC 2 cut(s) 164, 361
CviJI RGCY 5 cut(s) 5, 186, 216, 314, 370
CviKI_1 RGCY 5 cut(s) 5, 186, 216, 314, 370
CviQI GTAC 2 cut(s) 164, 361
DdeI CTNAG 4 cut(s) 26, 146, 371, 396
DpnI GATC 2 cut(s) 14, 34
DpnII GATC 2 cut(s) 12, 32
Eam1104I CTCTTC 2 cut(s) 326, 332
EarI CTCTTC 2 cut(s) 326, 332
Eco31I GGTCTC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 386
FaiI YATR 2 cut(s) 105, 204
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 1 cut(s) 314
HgaI GACGC 2 cut(s) 66, 368
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 1 cut(s) 296
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 2 cut(s) 122, 385
HpyAV CCTTC 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 4 cut(s) 26, 146, 371, 396
Kzo9I GATC 2 cut(s) 12, 32
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 5 cut(s) 84, 177, 240, 295, 349
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 46
MalI GATC 2 cut(s) 14, 34
MboI GATC 2 cut(s) 12, 32
MboII GAAGA 7 cut(s) 42, 83, 337, 340, 343, 349, 355
MluCI AATT 1 cut(s) 134
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 6 cut(s) 111, 199, 265, 327, 333, 366
MvnI CGCG 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 376
NdeII GATC 2 cut(s) 12, 32
NlaIV GGNNCC 2 cut(s) 23, 187
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PpuMI RGGWCCY 1 cut(s) 22
Psp5II RGGWCCY 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 23, 187
PspPI GGNCC 2 cut(s) 22, 312
PspPPI RGGWCCY 1 cut(s) 22
PstI CTGCAG 1 cut(s) 76
RsaI GTAC 2 cut(s) 165, 362
RsaNI GTAC 2 cut(s) 164, 361
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 12, 32
Sau96I GGNCC 2 cut(s) 22, 312
SchI GAGTC 1 cut(s) 290
SetI ASST 5 cut(s) 103, 169, 218, 309, 372
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 1 cut(s) 22
Sse9I AATT 1 cut(s) 134
SsiI CCGC 1 cut(s) 301
TaqI TCGA 2 cut(s) 54, 108
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 360
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 237, 362
VpaK11BI GGWCC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.